Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-13 14:06:12 (16540): Detected: vboxwrapper 26206
2025-05-13 14:06:12 (16540): Detected: BOINC client v8.0.2
2025-05-13 14:06:12 (16540): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2025-05-13 14:06:12 (16540): Successfully copied 'init_data.xml' to the shared directory.
2025-05-13 14:06:13 (16540): Create VM. (boinc_5d4890dec406b8e2, slot#9)
2025-05-13 14:06:13 (16540): Setting Memory Size for VM. (4200MB)
2025-05-13 14:06:14 (16540): Setting CPU Count for VM. (2)
2025-05-13 14:06:14 (16540): Setting Chipset Options for VM.
2025-05-13 14:06:14 (16540): Setting Graphics Controller Options for VM.
2025-05-13 14:06:14 (16540): Setting Boot Options for VM.
2025-05-13 14:06:15 (16540): Setting Network Configuration for NAT.
2025-05-13 14:06:15 (16540): Enabling VM Network Access.
2025-05-13 14:06:15 (16540): Disabling USB Support for VM.
2025-05-13 14:06:15 (16540): Disabling COM Port Support for VM.
2025-05-13 14:06:16 (16540): Disabling LPT Port Support for VM.
2025-05-13 14:06:16 (16540): Disabling Audio Support for VM.
2025-05-13 14:06:16 (16540): Disabling Clipboard Support for VM.
2025-05-13 14:06:16 (16540): Disabling Drag and Drop Support for VM.
2025-05-13 14:06:17 (16540): Adding storage controller(s) to VM.
2025-05-13 14:06:17 (16540): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-13 14:06:17 (16540): Adding VirtualBox Guest Additions to VM.
2025-05-13 14:06:18 (16540): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-13 14:06:18 (16540): forwarding host port 56465 to guest port 80
2025-05-13 14:06:18 (16540): Enabling remote desktop for VM.
2025-05-13 14:06:18 (16540): Required extension pack not installed, remote desktop not enabled.
2025-05-13 14:06:18 (16540): Enabling shared directory for VM.
2025-05-13 14:06:19 (16540): Starting VM using VBoxManage interface. (boinc_5d4890dec406b8e2, slot#9)
2025-05-13 14:06:23 (16540): Successfully started VM. (PID = '18104')
2025-05-13 14:06:23 (16540): Reporting VM Process ID to BOINC.
2025-05-13 14:06:23 (16540): Guest Log: BIOS: VirtualBox 6.1.12
2025-05-13 14:06:23 (16540): Guest Log: CPUID EDX: 0x178bfbff
2025-05-13 14:06:23 (16540): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-13 14:06:23 (16540): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-13 14:06:23 (16540): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-13 14:06:23 (16540): Detected: Web Application Enabled (http://localhost:56465)
2025-05-13 14:06:23 (16540): Preference change detected
2025-05-13 14:06:23 (16540): Setting CPU throttle for VM. (60%)
2025-05-13 14:06:23 (16540): Setting checkpoint interval to 18000 seconds. (Higher value of (Preference: 18000 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-13 14:06:25 (16540): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-13 14:06:25 (16540): Guest Log: BIOS: Booting from Hard Disk...
2025-05-13 14:06:28 (16540): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-13 14:06:28 (16540): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-13 14:06:28 (16540): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-13 14:06:34 (16540): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-13 14:06:34 (16540): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-13 14:06:42 (16540): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-13 14:06:42 (16540): Guest Log: 00:00:00.000098 main     Log opened 2025-05-13T14:06:40.977558000Z
2025-05-13 14:06:42 (16540): Guest Log: 00:00:00.000160 main     OS Product: Linux
2025-05-13 14:06:42 (16540): Guest Log: 00:00:00.000204 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-13 14:06:42 (16540): Guest Log: 00:00:00.000234 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-13 14:06:42 (16540): Guest Log: 00:00:00.000260 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-13 14:06:42 (16540): Guest Log: 00:00:00.000261 main     Process ID: 1258
2025-05-13 14:06:42 (16540): Guest Log: 00:00:00.000261 main     Package type: LINUX_64BITS_GENERIC
2025-05-13 14:06:42 (16540): Guest Log: 00:00:00.000908 main     5.2.32 r132073 started. Verbose level = 0
2025-05-13 14:06:42 (16540): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-13 14:06:42 (16540): Guest Log: [INFO] Mounting shared directory
2025-05-13 14:06:42 (16540): Guest Log: [INFO] Checking for init_data.xml
2025-05-13 14:06:51 (16540): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-13 14:06:51 (16540): Guest Log: [INFO] Detected branch: prod
2025-05-13 14:06:52 (16540): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-13 14:06:52 (16540): Guest Log: Copying input files
2025-05-13 14:06:52 (16540): Guest Log: 00:00:10.003165 timesync vgsvcTimeSyncWorker: Radical guest time change: -43 189 115 689 000ns (GuestNow=1 747 102 011 863 951 000 ns GuestLast=1 747 145 200 979 640 000 ns fSetTimeLastLoop=true )
2025-05-13 14:06:54 (16540): Guest Log: Copied input files into RunAtlas.
2025-05-13 14:06:54 (16540): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-13 14:06:54 (16540): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-13 14:06:54 (16540): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-13 14:06:54 (16540): Guest Log: Further information can be found at the LHC@home message board.
2025-05-13 14:07:30 (16540): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-13 14:07:30 (16540): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-13 14:07:30 (16540): Guest Log: 2.6.3.0 1534 0 30008 145929 4 1 3117515 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-13 14:07:32 (16540): Guest Log: copied the webapp to /var/www
2025-05-13 14:07:32 (16540): Guest Log: ATHENA_PROC_NUMBER=2
2025-05-13 14:07:32 (16540): Guest Log: ATHENA_CORE_NUMBER=2
2025-05-13 14:07:32 (16540): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-13 14:07:32 (16540): Guest Log:  *** Starting ATLAS job. (PandaID=6634104120 taskID=44506063) ***
2025-05-13 15:46:24 (16540): Status Report: Elapsed Time: '6000.000000'
2025-05-13 15:46:24 (16540): Status Report: CPU Time: '5811.437500'
2025-05-13 17:26:26 (16540): Status Report: Elapsed Time: '12000.000000'
2025-05-13 17:26:26 (16540): Status Report: CPU Time: '13065.656250'
2025-05-13 19:06:27 (16540): Status Report: Elapsed Time: '18000.000000'
2025-05-13 19:06:27 (16540): Status Report: CPU Time: '20318.421875'
2025-05-13 20:33:31 (16540): Guest Log:  *** Job finished ***
2025-05-13 20:33:31 (16540): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:23,103 | INFO     | [data] copytool_out thread has finished
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:24,085 | INFO     | [job] control thread has finished
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:25,285 | INFO     | [data] queue_monitor thread has finished
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:25,386 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139957595146048)>', '<ExcThread(monitor, started 139956903192320)>']
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:25,589 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:25,589 | INFO     | [monitor] control thread has ended
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:30,391 | INFO     | all workflow threads have been joined
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:30,391 | INFO     | end of generic workflow (traces error code: 0)
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:30,391 | INFO     | traces error code: 0
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:30,391 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:30,484 [wrapper] ==== pilot stdout END ====
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:30,487 [wrapper] ==== wrapper stdout RESUME ====
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:30,490 [wrapper] pilotpid: 5852
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:30,493 [wrapper] Pilot exit status: 0
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:30,546 [wrapper] pandaids: 6634104120
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:30,573 [wrapper] cleanup supervisor_pilot 23267 5853
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:30,576 [wrapper] Test setup, not cleaning
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:30,581 [wrapper] apfmon messages muted
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:30,584 [wrapper] ==== wrapper stdout END ====
2025-05-13 20:33:31 (16540): Guest Log: 2025-05-13 08:33:30,587 [wrapper] ==== wrapper stderr END ====
2025-05-13 20:33:31 (16540): Guest Log:  *** Error codes and diagnostics ***
2025-05-13 20:33:31 (16540): Guest Log:     "exeErrorCode": 0,
2025-05-13 20:33:31 (16540): Guest Log:     "exeErrorDiag": "",
2025-05-13 20:33:31 (16540): Guest Log:     "pilotErrorCode": 0,
2025-05-13 20:33:31 (16540): Guest Log:     "pilotErrorDiag": "",
2025-05-13 20:33:31 (16540): Guest Log:  *** Listing of results directory ***
2025-05-13 20:33:31 (16540): Guest Log: total 202396
2025-05-13 20:33:31 (16540): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May  5 05:49 pilot3.tar.gz
2025-05-13 20:33:31 (16540): Guest Log: -rwx------. 1 atlas atlas     37140 May  5 06:23 runpilot2-wrapper.sh
2025-05-13 20:33:31 (16540): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May  5 06:23 queuedata.json
2025-05-13 20:33:31 (16540): Guest Log: -rwxr-xr-x. 1 atlas atlas      9473 May 13 02:06 init_data.xml
2025-05-13 20:33:31 (16540): Guest Log: -rwxr-xr-x. 1 atlas atlas    508880 May 13 02:06 input.tar.gz
2025-05-13 20:33:31 (16540): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May 13 02:06 start_atlas.sh
2025-05-13 20:33:31 (16540): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 13 02:06 EVNT.44506061._000166.pool.root.1 -> /data/./ATLAS.root_0
2025-05-13 20:33:31 (16540): Guest Log: -rw-r--r--. 1 atlas atlas      2555 May 13 02:07 pandaJob.out
2025-05-13 20:33:31 (16540): Guest Log: -rw-------. 1 atlas atlas       424 May 13 02:07 setup.sh.local
2025-05-13 20:33:31 (16540): Guest Log: -rw-------. 1 atlas atlas    999198 May 13 02:09 agis_schedconf.cvmfs.json
2025-05-13 20:33:31 (16540): Guest Log: drwx------. 4 atlas atlas      4096 May 13 02:09 pilot3
2025-05-13 20:33:31 (16540): Guest Log: -rw-------. 1 atlas atlas 198945540 May 13 08:31 HITS.44506063._003833.pool.root.1
2025-05-13 20:33:31 (16540): Guest Log: -rw-------. 1 atlas atlas      1027 May 13 08:32 memory_monitor_summary.json
2025-05-13 20:33:31 (16540): Guest Log: -rw-------. 1 atlas atlas   1596741 May 13 08:32 agis_ddmendpoints.agis.ALL.json
2025-05-13 20:33:31 (16540): Guest Log: -rw-------. 1 atlas atlas    358884 May 13 08:32 log.44506063._003833.job.log.tgz.1
2025-05-13 20:33:31 (16540): Guest Log: -rw-------. 1 atlas atlas        95 May 13 08:32 pilot_heartbeat.json
2025-05-13 20:33:31 (16540): Guest Log: -rw-------. 1 atlas atlas      7722 May 13 08:33 heartbeat.json
2025-05-13 20:33:31 (16540): Guest Log: -rw-------. 1 atlas atlas      4413 May 13 08:33 pilotlog.txt
2025-05-13 20:33:31 (16540): Guest Log: -rw-------. 1 atlas atlas   1901261 May 13 08:33 log.44506063._003833.job.log.1
2025-05-13 20:33:31 (16540): Guest Log: -rw-------. 1 atlas atlas       357 May 13 08:33 output.list
2025-05-13 20:33:31 (16540): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 13 08:33 runtime_log
2025-05-13 20:33:31 (16540): Guest Log: -rw-------. 1 atlas atlas   2283520 May 13 08:33 result.tar.gz
2025-05-13 20:33:31 (16540): Guest Log: -rw-------. 1 atlas atlas       656 May 13 08:33 s7yMDmZP4V7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmQbFLDmlXEQwn.diag
2025-05-13 20:33:31 (16540): Guest Log: -rw-r--r--. 1 atlas atlas     10936 May 13 08:33 runtime_log.err
2025-05-13 20:33:31 (16540): Guest Log: Looking for outputfile HITS.44506063._003833.pool.root.1
2025-05-13 20:33:31 (16540): Guest Log: HITS file was successfully produced
2025-05-13 20:33:31 (16540): Guest Log: -rw-------. 1 atlas atlas 198945540 May 13 08:31 /home/atlas/RunAtlas/HITS.44506063._003833.pool.root.1
2025-05-13 20:33:33 (16540): Guest Log: Successfully finished the ATLAS job!
2025-05-13 20:33:33 (16540): Guest Log: Copying the results back to the shared directory!
2025-05-13 20:33:33 (16540): Guest Log:  *** Contents of shared directory: ***
2025-05-13 20:33:33 (16540): Guest Log: total 413156
2025-05-13 20:33:33 (16540): Guest Log: -rwxrwxrwx. 1 root root 221291496 May 13 02:06 ATLAS.root_0
2025-05-13 20:33:33 (16540): Guest Log: -rwxrwxrwx. 1 root root 198945540 May 13 08:33 HITS.pool.root.1
2025-05-13 20:33:33 (16540): Guest Log: -rwxrwxrwx. 1 root root      9473 May 13 02:06 init_data.xml
2025-05-13 20:33:33 (16540): Guest Log: -rwxrwxrwx. 1 root root    508880 May 13 02:05 input.tar.gz
2025-05-13 20:33:33 (16540): Guest Log: -rwxrwxrwx. 1 root root   2283520 May 13 08:33 result.tar.gz
2025-05-13 20:33:33 (16540): Guest Log: -rwxrwxrwx. 1 root root     17569 May 13 02:05 start_atlas.sh
2025-05-13 20:33:33 (16540): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-13 20:33:33 (16540): VM Completion File Detected.
2025-05-13 20:33:33 (16540): Powering off VM.
2025-05-13 20:33:33 (16540): Successfully stopped VM.
2025-05-13 20:33:33 (16540): Deregistering VM. (boinc_5d4890dec406b8e2, slot#9)
2025-05-13 20:33:33 (16540): Removing network bandwidth throttle group from VM.
2025-05-13 20:33:33 (16540): Removing VM from VirtualBox.
20:33:39 (16540): called boinc_finish(0)

</stderr_txt>
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