Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-09 22:00:43 (15008): Detected: vboxwrapper 26206
2025-05-09 22:00:43 (15008): Detected: BOINC client v7.16.5
2025-05-09 22:00:43 (15008): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2025-05-09 22:00:44 (15008): Successfully copied 'init_data.xml' to the shared directory.
2025-05-09 22:00:44 (15008): Create VM. (boinc_fec727ebe5dfeb7c, slot#3)
2025-05-09 22:00:45 (15008): Setting Memory Size for VM. (4400MB)
2025-05-09 22:00:45 (15008): Setting CPU Count for VM. (4)
2025-05-09 22:00:45 (15008): Setting Chipset Options for VM.
2025-05-09 22:00:45 (15008): Setting Graphics Controller Options for VM.
2025-05-09 22:00:46 (15008): Setting Boot Options for VM.
2025-05-09 22:00:46 (15008): Setting Network Configuration for NAT.
2025-05-09 22:00:46 (15008): Enabling VM Network Access.
2025-05-09 22:00:46 (15008): Disabling USB Support for VM.
2025-05-09 22:00:47 (15008): Disabling COM Port Support for VM.
2025-05-09 22:00:47 (15008): Disabling LPT Port Support for VM.
2025-05-09 22:00:47 (15008): Disabling Audio Support for VM.
2025-05-09 22:00:47 (15008): Disabling Clipboard Support for VM.
2025-05-09 22:00:48 (15008): Disabling Drag and Drop Support for VM.
2025-05-09 22:00:48 (15008): Adding storage controller(s) to VM.
2025-05-09 22:00:48 (15008): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-09 22:00:49 (15008): Adding VirtualBox Guest Additions to VM.
2025-05-09 22:00:49 (15008): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-09 22:00:49 (15008): forwarding host port 63684 to guest port 80
2025-05-09 22:00:49 (15008): Enabling remote desktop for VM.
2025-05-09 22:00:50 (15008): Enabling shared directory for VM.
2025-05-09 22:00:50 (15008): Starting VM using VBoxManage interface. (boinc_fec727ebe5dfeb7c, slot#3)
2025-05-09 22:00:55 (15008): Successfully started VM. (PID = '13128')
2025-05-09 22:00:55 (15008): Reporting VM Process ID to BOINC.
2025-05-09 22:00:55 (15008): Guest Log: BIOS: VirtualBox 5.2.44
2025-05-09 22:00:55 (15008): Guest Log: CPUID EDX: 0x178bfbff
2025-05-09 22:00:55 (15008): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-09 22:00:55 (15008): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-09 22:00:55 (15008): Detected: Web Application Enabled (http://localhost:63684)
2025-05-09 22:00:55 (15008): Detected: Remote Desktop Enabled (localhost:63685)
2025-05-09 22:00:55 (15008): Preference change detected
2025-05-09 22:00:55 (15008): Setting CPU throttle for VM. (100%)
2025-05-09 22:00:55 (15008): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-09 22:00:57 (15008): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-09 22:00:57 (15008): Guest Log: BIOS: Booting from Hard Disk...
2025-05-09 22:01:00 (15008): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-09 22:01:00 (15008): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-09 22:01:00 (15008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-09 22:01:04 (15008): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-09 22:01:04 (15008): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-09 22:01:10 (15008): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-09 22:01:10 (15008): Guest Log: 00:00:00.000168 main     Log opened 2025-05-09T22:01:08.636860000Z
2025-05-09 22:01:10 (15008): Guest Log: 00:00:00.000273 main     OS Product: Linux
2025-05-09 22:01:10 (15008): Guest Log: 00:00:00.000307 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-09 22:01:10 (15008): Guest Log: 00:00:00.000337 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-09 22:01:10 (15008): Guest Log: 00:00:00.000364 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-09 22:01:10 (15008): Guest Log: 00:00:00.000365 main     Process ID: 1299
2025-05-09 22:01:10 (15008): Guest Log: 00:00:00.000365 main     Package type: LINUX_64BITS_GENERIC
2025-05-09 22:01:10 (15008): Guest Log: 00:00:00.001322 main     5.2.32 r132073 started. Verbose level = 0
2025-05-09 22:01:10 (15008): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-09 22:01:10 (15008): Guest Log: [INFO] Mounting shared directory
2025-05-09 22:01:10 (15008): Guest Log: [INFO] Checking for init_data.xml
2025-05-09 22:01:13 (15008): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-09 22:01:13 (15008): Guest Log: [INFO] Detected branch: prod
2025-05-09 22:01:13 (15008): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-09 22:01:13 (15008): Guest Log: Copying input files
2025-05-09 22:01:15 (15008): Guest Log: Copied input files into RunAtlas.
2025-05-09 22:01:15 (15008): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-09 22:01:15 (15008): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-09 22:01:15 (15008): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-09 22:01:15 (15008): Guest Log: Further information can be found at the LHC@home message board.
2025-05-09 22:01:20 (15008): Guest Log: 00:00:10.003542 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 789 131 424 000ns (GuestNow=1 746 817 279 508 373 000 ns GuestLast=1 746 828 068 639 797 000 ns fSetTimeLastLoop=true )
2025-05-09 22:01:24 (15008): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-09 22:01:24 (15008): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-09 22:01:24 (15008): Guest Log: 2.6.3.0 1575 0 30168 145805 4 1 3117346 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-09 22:01:25 (15008): Guest Log: copied the webapp to /var/www
2025-05-09 22:01:25 (15008): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-09 22:01:25 (15008): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-09 22:01:26 (15008): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-09 22:01:26 (15008): Guest Log:  *** Starting ATLAS job. (PandaID=6638757920 taskID=44506063) ***
2025-05-09 23:40:58 (15008): Status Report: Elapsed Time: '6000.000000'
2025-05-09 23:40:58 (15008): Status Report: CPU Time: '19969.171875'
2025-05-10 01:21:01 (15008): Status Report: Elapsed Time: '12000.000000'
2025-05-10 01:21:01 (15008): Status Report: CPU Time: '43378.718750'
2025-05-10 02:02:18 (15008): Guest Log:  *** Job finished ***
2025-05-10 02:02:18 (15008): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:06,073 | INFO     | [job] create_data_payload thread has finished
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:06,725 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:10,733 | INFO     | [data] queue_monitor thread has finished
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:11,896 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140126241908544)>', '<ExcThread(monitor, started 140125581338368)>']
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:12,103 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:12,103 | INFO     | [monitor] control thread has ended
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:16,901 | INFO     | all workflow threads have been joined
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:16,901 | INFO     | end of generic workflow (traces error code: 0)
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:16,902 | INFO     | traces error code: 0
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:16,902 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:17,017 [wrapper] ==== pilot stdout END ====
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:17,022 [wrapper] ==== wrapper stdout RESUME ====
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:17,029 [wrapper] pilotpid: 5898
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:17,033 [wrapper] Pilot exit status: 0
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:17,230 [wrapper] pandaids: 6638757920
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:17,260 [wrapper] cleanup supervisor_pilot 11687 5899
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:17,269 [wrapper] Test setup, not cleaning
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:17,274 [wrapper] apfmon messages muted
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:17,279 [wrapper] ==== wrapper stdout END ====
2025-05-10 02:02:18 (15008): Guest Log: 2025-05-09 23:02:17,284 [wrapper] ==== wrapper stderr END ====
2025-05-10 02:02:18 (15008): Guest Log:  *** Error codes and diagnostics ***
2025-05-10 02:02:18 (15008): Guest Log:     "exeErrorCode": 0,
2025-05-10 02:02:18 (15008): Guest Log:     "exeErrorDiag": "",
2025-05-10 02:02:18 (15008): Guest Log:     "pilotErrorCode": 0,
2025-05-10 02:02:18 (15008): Guest Log:     "pilotErrorDiag": "",
2025-05-10 02:02:18 (15008): Guest Log:  *** Listing of results directory ***
2025-05-10 02:02:18 (15008): Guest Log: total 204104
2025-05-10 02:02:18 (15008): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May  8 15:16 pilot3.tar.gz
2025-05-10 02:02:18 (15008): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May  8 15:18 queuedata.json
2025-05-10 02:02:18 (15008): Guest Log: -rwx------. 1 atlas atlas     37140 May  8 15:23 runpilot2-wrapper.sh
2025-05-10 02:02:18 (15008): Guest Log: -rwxr-xr-x. 1 atlas atlas      8857 May  9 19:01 init_data.xml
2025-05-10 02:02:18 (15008): Guest Log: -rwxr-xr-x. 1 atlas atlas    508890 May  9 19:01 input.tar.gz
2025-05-10 02:02:18 (15008): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May  9 19:01 start_atlas.sh
2025-05-10 02:02:18 (15008): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May  9 19:01 EVNT.44506061._000607.pool.root.1 -> /data/./ATLAS.root_0
2025-05-10 02:02:18 (15008): Guest Log: -rw-r--r--. 1 atlas atlas      2556 May  9 19:01 pandaJob.out
2025-05-10 02:02:18 (15008): Guest Log: -rw-------. 1 atlas atlas       424 May  9 19:01 setup.sh.local
2025-05-10 02:02:18 (15008): Guest Log: -rw-------. 1 atlas atlas    996336 May  9 19:02 agis_schedconf.cvmfs.json
2025-05-10 02:02:18 (15008): Guest Log: drwx------. 4 atlas atlas      4096 May  9 19:02 pilot3
2025-05-10 02:02:18 (15008): Guest Log: -rw-------. 1 atlas atlas 202126447 May  9 23:01 HITS.44506063._056105.pool.root.1
2025-05-10 02:02:18 (15008): Guest Log: -rw-------. 1 atlas atlas        95 May  9 23:01 pilot_heartbeat.json
2025-05-10 02:02:18 (15008): Guest Log: -rw-------. 1 atlas atlas      1032 May  9 23:01 memory_monitor_summary.json
2025-05-10 02:02:18 (15008): Guest Log: -rw-------. 1 atlas atlas   1596741 May  9 23:01 agis_ddmendpoints.agis.ALL.json
2025-05-10 02:02:18 (15008): Guest Log: -rw-------. 1 atlas atlas    328618 May  9 23:01 log.44506063._056105.job.log.tgz.1
2025-05-10 02:02:18 (15008): Guest Log: -rw-------. 1 atlas atlas      7725 May  9 23:02 heartbeat.json
2025-05-10 02:02:18 (15008): Guest Log: -rw-------. 1 atlas atlas      4413 May  9 23:02 pilotlog.txt
2025-05-10 02:02:18 (15008): Guest Log: -rw-------. 1 atlas atlas   1217778 May  9 23:02 log.44506063._056105.job.log.1
2025-05-10 02:02:18 (15008): Guest Log: -rw-------. 1 atlas atlas       357 May  9 23:02 output.list
2025-05-10 02:02:18 (15008): Guest Log: -rw-r--r--. 1 atlas atlas       620 May  9 23:02 runtime_log
2025-05-10 02:02:18 (15008): Guest Log: -rw-------. 1 atlas atlas   1566720 May  9 23:02 result.tar.gz
2025-05-10 02:02:18 (15008): Guest Log: -rw-r--r--. 1 atlas atlas     10981 May  9 23:02 runtime_log.err
2025-05-10 02:02:18 (15008): Guest Log: -rw-------. 1 atlas atlas       671 May  9 23:02 7K3MDmqGIX7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmWe9LDmJ2NYln.diag
2025-05-10 02:02:18 (15008): Guest Log: Looking for outputfile HITS.44506063._056105.pool.root.1
2025-05-10 02:02:18 (15008): Guest Log: HITS file was successfully produced
2025-05-10 02:02:18 (15008): Guest Log: -rw-------. 1 atlas atlas 202126447 May  9 23:01 /home/atlas/RunAtlas/HITS.44506063._056105.pool.root.1
2025-05-10 02:02:19 (15008): Guest Log: Successfully finished the ATLAS job!
2025-05-10 02:02:19 (15008): Guest Log: Copying the results back to the shared directory!
2025-05-10 02:02:19 (15008): Guest Log:  *** Contents of shared directory: ***
2025-05-10 02:02:19 (15008): Guest Log: total 415696
2025-05-10 02:02:19 (15008): Guest Log: -rwxrwxrwx. 1 root root 221425702 May  9 19:00 ATLAS.root_0
2025-05-10 02:02:19 (15008): Guest Log: -rwxrwxrwx. 1 root root 202126447 May  9 23:02 HITS.pool.root.1
2025-05-10 02:02:19 (15008): Guest Log: -rwxrwxrwx. 1 root root      8857 May  9 19:00 init_data.xml
2025-05-10 02:02:19 (15008): Guest Log: -rwxrwxrwx. 1 root root    508890 May  9 05:16 input.tar.gz
2025-05-10 02:02:19 (15008): Guest Log: -rwxrwxrwx. 1 root root   1566720 May  9 23:02 result.tar.gz
2025-05-10 02:02:19 (15008): Guest Log: -rwxrwxrwx. 1 root root     17569 May  9 05:16 start_atlas.sh
2025-05-10 02:02:19 (15008): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-10 02:02:19 (15008): VM Completion File Detected.
2025-05-10 02:02:19 (15008): Powering off VM.
2025-05-10 02:02:19 (15008): Successfully stopped VM.
2025-05-10 02:02:19 (15008): Deregistering VM. (boinc_fec727ebe5dfeb7c, slot#3)
2025-05-10 02:02:19 (15008): Removing network bandwidth throttle group from VM.
2025-05-10 02:02:20 (15008): Removing VM from VirtualBox.
02:02:25 (15008): called boinc_finish(0)

</stderr_txt>
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