Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
17:41:30 (7256): wrapper (7.7.26015): starting
17:41:30 (7256): wrapper: running run_atlas (--nthreads 12)
[2025-05-08 17:41:30] Arguments: --nthreads 12
[2025-05-08 17:41:30] Threads: 12
[2025-05-08 17:41:30] Checking for CVMFS
[2025-05-08 17:41:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-08 17:41:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-08 17:41:30] Running cvmfs_config stat atlas.cern.ch
[2025-05-08 17:41:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-08 17:41:30] 2.10.0.0 7912 5242 102928 145773 0 180 13081363 16777217 94 130560 0 17340581 99.997 1492101 5613 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-05-08 17:41:30] CVMFS is ok
[2025-05-08 17:41:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-08 17:41:30] Checking for apptainer binary...
[2025-05-08 17:41:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-08 17:41:30] Running /usr/bin/apptainer --version
[2025-05-08 17:41:30] apptainer version 1.3.6-150600.4.9.1
[2025-05-08 17:41:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-08 17:41:30] boinc-runner
[2025-05-08 17:41:30] apptainer works
[2025-05-08 17:41:30] Set ATHENA_PROC_NUMBER=12
[2025-05-08 17:41:30] Set ATHENA_CORE_NUMBER=12
[2025-05-08 17:41:30] Starting ATLAS job with PandaID=6638758707
[2025-05-08 17:41:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-08 18:20:20]  *** The last 200 lines of the pilot log: ***
[2025-05-08 18:20:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/70/ad/log.44506063._056506.job.log.tgz.1
[2025-05-08 18:20:20]  workdir=None
[2025-05-08 18:20:20] ]
[2025-05-08 18:20:20] 2025-05-08 23:19:52,231 | INFO     | transferring file log.44506063._056506.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6638758707/log.44506063._056506.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-05-08 18:20:20] 2025-05-08 23:19:52,231 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6638758707/log.44506063._056506.job.log.tgz.1 /var/lib/boinc/slots/1/log.44506063._056506.job
[2025-05-08 18:20:20] 2025-05-08 23:19:52,244 | INFO     | adding to output.list: log.44506063._056506.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/70/ad/log.44506063._056506.job.log.tg
[2025-05-08 18:20:20] 2025-05-08 23:19:52,245 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-08 18:20:20] 2025-05-08 23:19:52,245 | INFO     | summary of transferred files:
[2025-05-08 18:20:20] 2025-05-08 23:19:52,245 | INFO     |  -- lfn=log.44506063._056506.job.log.tgz.1, status_code=0, status=transferred
[2025-05-08 18:20:20] 2025-05-08 23:19:52,245 | INFO     | stage-out finished correctly
[2025-05-08 18:20:20] 2025-05-08 23:19:52,279 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-08 18:20:20] 2025-05-08 23:19:52,908 | WARNING  | process 29521 can no longer be monitored (due to stat problems) - aborting
[2025-05-08 18:20:20] 2025-05-08 23:19:52,908 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6638758707/memory_monitor_summary.json (trf name=prmon)
[2025-05-08 18:20:20] 2025-05-08 23:19:52,908 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6638758707/memory_monitor_summary.json (trf name=prmon)
[2025-05-08 18:20:20] 2025-05-08 23:19:52,909 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4357864 B
[2025-05-08 18:20:20] 2025-05-08 23:19:52,909 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15631 B
[2025-05-08 18:20:20] 2025-05-08 23:19:52,909 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-05-08 18:20:20] 2025-05-08 23:19:52,920 | INFO     | sufficient remaining disk space (3882863296512 B)
[2025-05-08 18:20:20] 2025-05-08 23:19:52,921 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-05-08 18:20:20] 2025-05-08 23:19:52,921 | INFO     | size of work directory /var/lib/boinc/slots/1/PanDA_Pilot-6638758707: 4639867 B (within 2537553920 B limit)
[2025-05-08 18:20:20] 2025-05-08 23:19:52,921 | INFO     | pfn file=/var/lib/boinc/slots/1/PanDA_Pilot-6638758707/HITS.44506063._056506.pool.root.1 does not exist (skip from workdir size calculation)
[2025-05-08 18:20:20] 2025-05-08 23:19:52,921 | INFO     | total size of present files: 0 B (workdir size: 4639867 B)
[2025-05-08 18:20:20] 2025-05-08 23:19:52,921 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/1/PanDA_Pilot-6638758707/HITS.44506063._056506.pool.root.1 since it does not exist
[2025-05-08 18:20:20] 2025-05-08 23:19:52,956 | INFO     | number of running child processes to parent process 29521: 1
[2025-05-08 18:20:20] 2025-05-08 23:19:52,957 | INFO     | maximum number of monitored processes: 6
[2025-05-08 18:20:20] 2025-05-08 23:19:55,163 | INFO     | job 6638758707 has state=finished
[2025-05-08 18:20:20] 2025-05-08 23:19:55,163 | INFO     | preparing for final server update for job 6638758707 in state='finished'
[2025-05-08 18:20:20] 2025-05-08 23:19:55,164 | INFO     | this job has now completed (state=finished)
[2025-05-08 18:20:20] 2025-05-08 23:19:55,164 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-08 18:20:20] 2025-05-08 23:19:55,164 | INFO     | log transfer has been attempted: DONE
[2025-05-08 18:20:20] 2025-05-08 23:19:55,164 | INFO     | job 6638758707 has finished - writing final server update
[2025-05-08 18:20:20] 2025-05-08 23:19:55,164 | INFO     | total number of processed events: 400 (read)
[2025-05-08 18:20:20] 2025-05-08 23:19:55,166 | INFO     | executing command: lscpu
[2025-05-08 18:20:20] 2025-05-08 23:19:55,186 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-08 18:20:20] 2025-05-08 23:19:55,459 | INFO     | monitor loop #179: job 0:6638758707 is in state 'finished'
[2025-05-08 18:20:20] 2025-05-08 23:19:55,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-08 18:20:20] 2025-05-08 23:19:57,961 | INFO     | monitor loop #180: job 0:6638758707 is in state 'finished'
[2025-05-08 18:20:20] 2025-05-08 23:19:57,962 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-08 18:20:20] 2025-05-08 23:19:58,718 | INFO     | PID=11252 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-05-08 18:20:20] 2025-05-08 23:19:58,719 | INFO     | .. there are 2 such processes running
[2025-05-08 18:20:20] 2025-05-08 23:20:00,377 | INFO     | CPU arch script returned: x86-64-v4
[2025-05-08 18:20:20] 2025-05-08 23:20:00,377 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6638758707/memory_monitor_summary.json (trf name=prmon)
[2025-05-08 18:20:20] 2025-05-08 23:20:00,377 | INFO     | extracted standard info from prmon json
[2025-05-08 18:20:20] 2025-05-08 23:20:00,377 | INFO     | extracted standard memory fields from prmon json
[2025-05-08 18:20:20] 2025-05-08 23:20:00,377 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | INFO     | fitting pss+swap vs Time
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | INFO     | sum of square deviations: 9228080.0
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | INFO     | sum of deviations: 3762902486.0
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | INFO     | mean x: 1746745336.0
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | INFO     | mean y: 2797236.5483870967
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | INFO     | -- intersect: -712261548894.3159
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | INFO     | intersect: -712261548894.3159
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | INFO     | chi2: 0.6432585727804431
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | INFO     | -- intersect: -712261548894.3159
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | INFO     | current memory leak: 407.77 B/s (using 31 data points, chi2=0.64)
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | INFO     | ..............................
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | INFO     | . Timing measurements:
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | INFO     | . get job = 0 s
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | INFO     | . initial setup = 2 s
[2025-05-08 18:20:20] 2025-05-08 23:20:00,378 | INFO     | . payload setup = 2 s
[2025-05-08 18:20:20] 2025-05-08 23:20:00,379 | INFO     | . stage-in = 0 s
[2025-05-08 18:20:20] 2025-05-08 23:20:00,379 | INFO     | . payload execution = 2275 s
[2025-05-08 18:20:20] 2025-05-08 23:20:00,379 | INFO     | . stage-out = 0 s
[2025-05-08 18:20:20] 2025-05-08 23:20:00,379 | INFO     | . log creation = 0 s
[2025-05-08 18:20:20] 2025-05-08 23:20:00,379 | INFO     | ..............................
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | 
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | job summary report
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | --------------------------------------------------
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | PanDA job id: 6638758707
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | task id: 44506063
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | errors: (none)
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | pilot state: finished 
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | transexitcode: 0
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | exeerrorcode: 0
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | exeerrordiag: 
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | exitcode: 0
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | exitmsg: OK
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | cpuconsumptiontime: 20907 s
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | nevents: 400
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | neventsw: 0
[2025-05-08 18:20:20] 2025-05-08 23:20:00,402 | INFO     | pid: 29521
[2025-05-08 18:20:20] 2025-05-08 23:20:00,403 | INFO     | pgrp: 29521
[2025-05-08 18:20:20] 2025-05-08 23:20:00,403 | INFO     | corecount: 12
[2025-05-08 18:20:20] 2025-05-08 23:20:00,403 | INFO     | event service: False
[2025-05-08 18:20:20] 2025-05-08 23:20:00,403 | INFO     | sizes: {0: 2393738, 3: 2393944, 11: 2393972, 2281: 2419054, 2282: 2428050, 2290: 2428192}
[2025-05-08 18:20:20] 2025-05-08 23:20:00,403 | INFO     | --------------------------------------------------
[2025-05-08 18:20:20] 2025-05-08 23:20:00,403 | INFO     | 
[2025-05-08 18:20:20] 2025-05-08 23:20:00,403 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-05-08 18:20:20] 2025-05-08 23:20:00,412 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,412 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,412 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,412 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,412 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,412 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,412 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,412 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,412 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,412 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,412 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,412 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,412 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,412 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,413 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,413 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,413 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,413 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-08 18:20:20] 2025-05-08 23:20:00,413 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,413 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-08 18:20:20] 2025-05-08 23:20:00,413 | INFO     | job 6638758707 has completed (purged errors)
[2025-05-08 18:20:20] 2025-05-08 23:20:00,413 | INFO     | overall cleanup function is called
[2025-05-08 18:20:20] 2025-05-08 23:20:01,421 | INFO     | --- collectZombieJob: --- 10, [29521]
[2025-05-08 18:20:20] 2025-05-08 23:20:01,421 | INFO     | zombie collector waiting for pid 29521
[2025-05-08 18:20:20] 2025-05-08 23:20:01,421 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-08 18:20:20] 2025-05-08 23:20:01,422 | INFO     | collected zombie processes
[2025-05-08 18:20:20] 2025-05-08 23:20:01,422 | INFO     | will attempt to kill all subprocesses of pid=29521
[2025-05-08 18:20:20] 2025-05-08 23:20:01,457 | INFO     | process IDs to be killed: [29521] (in reverse order)
[2025-05-08 18:20:20] 2025-05-08 23:20:01,480 | WARNING  | found no corresponding commands to process id(s)
[2025-05-08 18:20:20] 2025-05-08 23:20:01,480 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-08 18:20:20] 2025-05-08 23:20:01,483 | INFO     | did not find any defunct processes belonging to 29521
[2025-05-08 18:20:20] 2025-05-08 23:20:01,485 | INFO     | did not find any defunct processes belonging to 29521
[2025-05-08 18:20:20] 2025-05-08 23:20:01,485 | INFO     | ready for new job
[2025-05-08 18:20:20] 2025-05-08 23:20:01,485 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-08 18:20:20] 2025-05-08 23:20:01,486 | INFO     | **************************************
[2025-05-08 18:20:20] 2025-05-08 23:20:01,486 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-08 18:20:20] 2025-05-08 23:20:01,486 | INFO     | **************************************
[2025-05-08 18:20:20] 2025-05-08 23:20:01,486 | INFO     | 
[2025-05-08 18:20:20] 2025-05-08 23:20:01,487 | INFO     | architecture information:
[2025-05-08 18:20:20] 2025-05-08 23:20:01,487 | INFO     | executing command: cat /etc/os-release
[2025-05-08 18:20:20] 2025-05-08 23:20:01,496 | INFO     | cat /etc/os-release:
[2025-05-08 18:20:20] NAME="CentOS Linux"
[2025-05-08 18:20:20] VERSION="7 (Core)"
[2025-05-08 18:20:20] ID="centos"
[2025-05-08 18:20:20] ID_LIKE="rhel fedora"
[2025-05-08 18:20:20] VERSION_ID="7"
[2025-05-08 18:20:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-08 18:20:20] ANSI_COLOR="0;31"
[2025-05-08 18:20:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-08 18:20:20] HOME_URL="https://www.centos.org/"
[2025-05-08 18:20:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-08 18:20:20] 
[2025-05-08 18:20:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-08 18:20:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-08 18:20:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-08 18:20:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-08 18:20:20] 
[2025-05-08 18:20:20] 2025-05-08 23:20:01,496 | INFO     | **************************************
[2025-05-08 18:20:20] 2025-05-08 23:20:01,997 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-05-08 18:20:20] 2025-05-08 23:20:02,008 | INFO     | sufficient remaining disk space (3882863296512 B)
[2025-05-08 18:20:20] 2025-05-08 23:20:02,009 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-08 18:20:20] 2025-05-08 23:20:02,009 | INFO     | current server update state: UPDATING_FINAL
[2025-05-08 18:20:20] 2025-05-08 23:20:02,009 | INFO     | update_server=False
[2025-05-08 18:20:20] 2025-05-08 23:20:02,009 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-08 18:20:20] 2025-05-08 23:20:02,009 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-08 18:20:20] 2025-05-08 23:20:02,009 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-08 18:20:20] 2025-05-08 23:20:02,010 | INFO     | aborting loop
[2025-05-08 18:20:20] 2025-05-08 23:20:02,725 | INFO     | found 0 job(s) in 20 queues
[2025-05-08 18:20:20] 2025-05-08 23:20:02,726 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-08 18:20:20] 2025-05-08 23:20:02,726 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-08 18:20:20] 2025-05-08 23:20:02,780 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-08 18:20:20] 2025-05-08 23:20:02,782 | INFO     | all data control threads have been joined
[2025-05-08 18:20:20] 2025-05-08 23:20:02,798 | INFO     | all payload control threads have been joined
[2025-05-08 18:20:20] 2025-05-08 23:20:02,819 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-08 18:20:20] 2025-05-08 23:20:03,013 | INFO     | [job] retrieve thread has finished
[2025-05-08 18:20:20] 2025-05-08 23:20:03,015 | INFO     | [job] queue monitor thread has finished
[2025-05-08 18:20:20] 2025-05-08 23:20:03,015 | INFO     | [job] job monitor thread has finished
[2025-05-08 18:20:20] 2025-05-08 23:20:03,225 | INFO     | all job control threads have been joined
[2025-05-08 18:20:20] 2025-05-08 23:20:03,341 | INFO     | [data] copytool_in thread has finished
[2025-05-08 18:20:20] 2025-05-08 23:20:03,650 | INFO     | [payload] failed_post thread has finished
[2025-05-08 18:20:20] 2025-05-08 23:20:03,787 | INFO     | [data] control thread has finished
[2025-05-08 18:20:20] 2025-05-08 23:20:03,803 | INFO     | [payload] control thread has finished
[2025-05-08 18:20:20] 2025-05-08 23:20:03,837 | INFO     | [job] validate thread has finished
[2025-05-08 18:20:20] 2025-05-08 23:20:04,025 | INFO     | [payload] validate_pre thread has finished
[2025-05-08 18:20:20] 2025-05-08 23:20:04,113 | INFO     | [job] create_data_payload thread has finished
[2025-05-08 18:20:20] 2025-05-08 23:20:04,193 | INFO     | [payload] validate_post thread has finished
[2025-05-08 18:20:20] 2025-05-08 23:20:04,229 | INFO     | [job] control thread has finished
[2025-05-08 18:20:20] 2025-05-08 23:20:04,427 | INFO     | [payload] execute_payloads thread has finished
[2025-05-08 18:20:20] 2025-05-08 23:20:04,785 | INFO     | [data] copytool_out thread has finished
[2025-05-08 18:20:20] 2025-05-08 23:20:06,821 | INFO     | [data] queue_monitor thread has finished
[2025-05-08 18:20:20] 2025-05-08 23:20:12,335 | INFO     | job.realtimelogging is not enabled
[2025-05-08 18:20:20] 2025-05-08 23:20:13,340 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-08 18:20:20] 2025-05-08 23:20:15,417 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140120817821504)>', '<ExcThread(monitor, started 140119885477632)>']
[2025-05-08 18:20:20] 2025-05-08 23:20:15,777 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-08 18:20:20] 2025-05-08 23:20:15,778 | INFO     | [monitor] control thread has ended
[2025-05-08 18:20:20] 2025-05-08 23:20:20,441 | INFO     | all workflow threads have been joined
[2025-05-08 18:20:20] 2025-05-08 23:20:20,441 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-08 18:20:20] 2025-05-08 23:20:20,442 | INFO     | traces error code: 0
[2025-05-08 18:20:20] 2025-05-08 23:20:20,442 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-08 18:20:20] 2025-05-08 23:20:20,482 [wrapper] ==== pilot stdout END ====
[2025-05-08 18:20:20] 2025-05-08 23:20:20,484 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-08 18:20:20] 2025-05-08 23:20:20,486 [wrapper] pilotpid: 11252
[2025-05-08 18:20:20] 2025-05-08 23:20:20,488 [wrapper] Pilot exit status: 0
[2025-05-08 18:20:20] 2025-05-08 23:20:20,495 [wrapper] pandaids: 6638758707
[2025-05-08 18:20:20] 2025-05-08 23:20:20,512 [wrapper] cleanup supervisor_pilot 22436 11253
[2025-05-08 18:20:20] 2025-05-08 23:20:20,514 [wrapper] Test setup, not cleaning
[2025-05-08 18:20:20] 2025-05-08 23:20:20,516 [wrapper] apfmon messages muted
[2025-05-08 18:20:20] 2025-05-08 23:20:20,518 [wrapper] ==== wrapper stdout END ====
[2025-05-08 18:20:20] 2025-05-08 23:20:20,520 [wrapper] ==== wrapper stderr END ====
[2025-05-08 18:20:20]  *** Error codes and diagnostics ***
[2025-05-08 18:20:20]     "exeErrorCode": 0,
[2025-05-08 18:20:20]     "exeErrorDiag": "",
[2025-05-08 18:20:20]     "pilotErrorCode": 0,
[2025-05-08 18:20:20]     "pilotErrorDiag": "",
[2025-05-08 18:20:20]  *** Listing of results directory ***
[2025-05-08 18:20:20] total 418156
[2025-05-08 18:20:20] -rw-r--r-- 1 boinc boinc    495897 May  8 10:40 pilot3.tar.gz
[2025-05-08 18:20:20] -rw-r--r-- 1 boinc boinc      5111 May  8 10:55 queuedata.json
[2025-05-08 18:20:20] -rwx------ 1 boinc boinc     37140 May  8 10:56 runpilot2-wrapper.sh
[2025-05-08 18:20:20] -rw-r--r-- 1 boinc boinc       100 May  8 17:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-08 18:20:20] -rwxr-xr-x 1 boinc boinc      7986 May  8 17:41 run_atlas
[2025-05-08 18:20:20] -rw-r--r-- 1 boinc boinc       105 May  8 17:41 job.xml
[2025-05-08 18:20:20] -rw-r--r-- 2 boinc boinc 227271523 May  8 17:41 EVNT.44506061._002181.pool.root.1
[2025-05-08 18:20:20] -rw-r--r-- 2 boinc boinc     17569 May  8 17:41 start_atlas.sh
[2025-05-08 18:20:20] drwxrwx--x 1 boinc boinc        76 May  8 17:41 shared
[2025-05-08 18:20:20] -rw-r--r-- 2 boinc boinc    508885 May  8 17:41 input.tar.gz
[2025-05-08 18:20:20] -rw-r--r-- 1 boinc boinc     10044 May  8 17:41 init_data.xml
[2025-05-08 18:20:20] -rw-r--r-- 1 boinc boinc         0 May  8 17:41 boinc_lockfile
[2025-05-08 18:20:20] -rw-r--r-- 1 boinc boinc      2557 May  8 17:41 pandaJob.out
[2025-05-08 18:20:20] -rw------- 1 boinc boinc       473 May  8 17:41 setup.sh.local
[2025-05-08 18:20:20] -rw------- 1 boinc boinc    997887 May  8 17:41 agis_schedconf.cvmfs.json
[2025-05-08 18:20:20] -rw------- 1 boinc boinc   1596741 May  8 17:41 agis_ddmendpoints.agis.ALL.json
[2025-05-08 18:20:20] drwx------ 1 boinc boinc       368 May  8 17:41 pilot3
[2025-05-08 18:20:20] -rw------- 1 boinc boinc 195872184 May  8 18:19 HITS.44506063._056506.pool.root.1
[2025-05-08 18:20:20] -rw-r--r-- 1 boinc boinc       529 May  8 18:19 boinc_task_state.xml
[2025-05-08 18:20:20] -rw------- 1 boinc boinc      1022 May  8 18:19 memory_monitor_summary.json
[2025-05-08 18:20:20] -rw------- 1 boinc boinc        95 May  8 18:19 pilot_heartbeat.json
[2025-05-08 18:20:20] -rw------- 1 boinc boinc    344372 May  8 18:19 log.44506063._056506.job.log.tgz.1
[2025-05-08 18:20:20] -rw------- 1 boinc boinc      7684 May  8 18:20 heartbeat.json
[2025-05-08 18:20:20] -rw-r--r-- 1 boinc boinc      8192 May  8 18:20 boinc_mmap_file
[2025-05-08 18:20:20] -rw-r--r-- 1 boinc boinc        27 May  8 18:20 wrapper_checkpoint.txt
[2025-05-08 18:20:20] -rw------- 1 boinc boinc      4427 May  8 18:20 pilotlog.txt
[2025-05-08 18:20:20] -rw------- 1 boinc boinc    260423 May  8 18:20 log.44506063._056506.job.log.1
[2025-05-08 18:20:20] -rw------- 1 boinc boinc       357 May  8 18:20 output.list
[2025-05-08 18:20:20] -rw-r--r-- 1 boinc boinc       620 May  8 18:20 runtime_log
[2025-05-08 18:20:20] -rw------- 1 boinc boinc    624640 May  8 18:20 result.tar.gz
[2025-05-08 18:20:20] -rw-r--r-- 1 boinc boinc     11478 May  8 18:20 runtime_log.err
[2025-05-08 18:20:20] -rw------- 1 boinc boinc       652 May  8 18:20 a2BODm4mIX7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmrh9LDmKYAhCn.diag
[2025-05-08 18:20:20] -rw-r--r-- 1 boinc boinc     22208 May  8 18:20 stderr.txt
[2025-05-08 18:20:20] HITS file was successfully produced:
[2025-05-08 18:20:20] -rw------- 1 boinc boinc 195872184 May  8 18:19 shared/HITS.pool.root.1
[2025-05-08 18:20:20]  *** Contents of shared directory: ***
[2025-05-08 18:20:20] total 414364
[2025-05-08 18:20:20] -rw-r--r-- 2 boinc boinc 227271523 May  8 17:41 ATLAS.root_0
[2025-05-08 18:20:20] -rw-r--r-- 2 boinc boinc     17569 May  8 17:41 start_atlas.sh
[2025-05-08 18:20:20] -rw-r--r-- 2 boinc boinc    508885 May  8 17:41 input.tar.gz
[2025-05-08 18:20:20] -rw------- 1 boinc boinc 195872184 May  8 18:19 HITS.pool.root.1
[2025-05-08 18:20:20] -rw------- 1 boinc boinc    624640 May  8 18:20 result.tar.gz
18:20:21 (7256): run_atlas exited; CPU time 20915.300533
18:20:21 (7256): called boinc_finish(0)

</stderr_txt>
]]>

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