Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:58:54 (7025): wrapper (7.7.26015): starting
10:58:54 (7025): wrapper: running run_atlas (--nthreads 8)
[2025-05-09 10:58:54] Arguments: --nthreads 8
[2025-05-09 10:58:54] Threads: 8
[2025-05-09 10:58:54] Checking for CVMFS
[2025-05-09 10:58:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-09 10:58:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-09 10:58:54] Running cvmfs_config stat atlas.cern.ch
[2025-05-09 10:58:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-09 10:58:54] 2.11.2.0 29279 5879 86300 145787 3 58 24255850 25165825 897 130560 0 2114650 99.618 1789615 1748 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-09 10:58:54] CVMFS is ok
[2025-05-09 10:58:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-09 10:58:54] Checking for apptainer binary...
[2025-05-09 10:58:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-09 10:58:54] Running /usr/bin/apptainer --version
[2025-05-09 10:58:54] apptainer version 1.3.2-1.el7
[2025-05-09 10:58:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-09 10:58:56] cg-vwn382.simple-grid.lan
[2025-05-09 10:58:56] apptainer works
[2025-05-09 10:58:56] Set ATHENA_PROC_NUMBER=8
[2025-05-09 10:58:56] Set ATHENA_CORE_NUMBER=8
[2025-05-09 10:58:56] Starting ATLAS job with PandaID=6640030458
[2025-05-09 10:58:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-09 17:05:34]  *** The last 200 lines of the pilot log: ***
[2025-05-09 17:05:34] 2025-05-09 13:28:59,055 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6640030458/memory_monitor_summary.json (trf name=prmon)
[2025-05-09 17:05:34] 2025-05-09 13:28:59,056 | INFO     | extracted standard info from prmon json
[2025-05-09 17:05:34] 2025-05-09 13:28:59,056 | INFO     | extracted standard memory fields from prmon json
[2025-05-09 17:05:34] 2025-05-09 13:28:59,056 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-09 17:05:34] 2025-05-09 13:28:59,056 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-09 17:05:34] 2025-05-09 13:28:59,056 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-09 17:05:34] 2025-05-09 13:28:59,068 | INFO     | fitting pss+swap vs Time
[2025-05-09 17:05:34] 2025-05-09 13:28:59,069 | INFO     | sum of square deviations: 5640782972.0
[2025-05-09 17:05:34] 2025-05-09 13:28:59,072 | INFO     | sum of deviations: 123604097663.0
[2025-05-09 17:05:34] 2025-05-09 13:28:59,072 | INFO     | mean x: 1746789173.0
[2025-05-09 17:05:34] 2025-05-09 13:28:59,072 | INFO     | mean y: 2424177.513307985
[2025-05-09 17:05:34] 2025-05-09 13:28:59,072 | INFO     | -- intersect: -38274230075.61243
[2025-05-09 17:05:34] 2025-05-09 13:28:59,072 | INFO     | intersect: -38274230075.61243
[2025-05-09 17:05:34] 2025-05-09 13:28:59,073 | INFO     | chi2: 4.711046904677053
[2025-05-09 17:05:34] 2025-05-09 13:28:59,073 | INFO     | sum of square deviations: 5325139844.5
[2025-05-09 17:05:34] 2025-05-09 13:28:59,076 | INFO     | sum of deviations: 138856553187.5
[2025-05-09 17:05:34] 2025-05-09 13:28:59,076 | INFO     | mean x: 1746789020.5
[2025-05-09 17:05:34] 2025-05-09 13:28:59,076 | INFO     | mean y: 2431412.5542635657
[2025-05-09 17:05:34] 2025-05-09 13:28:59,076 | INFO     | -- intersect: -45546250803.35356
[2025-05-09 17:05:34] 2025-05-09 13:28:59,076 | INFO     | intersect: -45546250803.35356
[2025-05-09 17:05:34] 2025-05-09 13:28:59,077 | INFO     | chi2: 3.8958128226094386
[2025-05-09 17:05:34] 2025-05-09 13:28:59,077 | INFO     | current chi2=3.8958128226094386 (change=17.304732866451886 %)
[2025-05-09 17:05:34] 2025-05-09 13:28:59,077 | INFO     | right removable region: 257
[2025-05-09 17:05:34] 2025-05-09 13:28:59,078 | INFO     | sum of square deviations: 5325139844.5
[2025-05-09 17:05:34] 2025-05-09 13:28:59,080 | INFO     | sum of deviations: 58769334645.4999
[2025-05-09 17:05:34] 2025-05-09 13:28:59,081 | INFO     | mean x: 1746789325.5
[2025-05-09 17:05:34] 2025-05-09 13:28:59,081 | INFO     | mean y: 2455421.1434108526
[2025-05-09 17:05:34] 2025-05-09 13:28:59,081 | INFO     | -- intersect: -19275469557.95834
[2025-05-09 17:05:34] 2025-05-09 13:28:59,081 | INFO     | intersect: -19275469557.95834
[2025-05-09 17:05:34] 2025-05-09 13:28:59,081 | INFO     | chi2: 2.2501274166363463
[2025-05-09 17:05:34] 2025-05-09 13:28:59,082 | INFO     | current chi2=2.2501274166363463 (change=52.237210493437125 %)
[2025-05-09 17:05:34] 2025-05-09 13:28:59,082 | INFO     | sum of square deviations: 5021496942.0
[2025-05-09 17:05:34] 2025-05-09 13:28:59,094 | INFO     | sum of deviations: 12142977260.999989
[2025-05-09 17:05:34] 2025-05-09 13:28:59,094 | INFO     | mean x: 1746789478.0
[2025-05-09 17:05:34] 2025-05-09 13:28:59,094 | INFO     | mean y: 2478838.790513834
[2025-05-09 17:05:34] 2025-05-09 13:28:59,094 | INFO     | -- intersect: -4221605165.661726
[2025-05-09 17:05:34] 2025-05-09 13:28:59,094 | INFO     | intersect: -4221605165.661726
[2025-05-09 17:05:34] 2025-05-09 13:28:59,095 | INFO     | chi2: 1.1034414467321294
[2025-05-09 17:05:34] 2025-05-09 13:28:59,095 | INFO     | current chi2=1.1034414467321294 (change=50.96093498644474 %)
[2025-05-09 17:05:34] 2025-05-09 13:28:59,095 | INFO     | sum of square deviations: 4729621702.0
[2025-05-09 17:05:34] 2025-05-09 13:28:59,098 | INFO     | sum of deviations: -3659473783.5000057
[2025-05-09 17:05:34] 2025-05-09 13:28:59,098 | INFO     | mean x: 1746789630.5
[2025-05-09 17:05:34] 2025-05-09 13:28:59,098 | INFO     | mean y: 2487014.004032258
[2025-05-09 17:05:34] 2025-05-09 13:28:59,098 | INFO     | -- intersect: 1354039265.086039
[2025-05-09 17:05:34] 2025-05-09 13:28:59,098 | INFO     | intersect: 1354039265.086039
[2025-05-09 17:05:34] 2025-05-09 13:28:59,099 | INFO     | chi2: 0.848805195372952
[2025-05-09 17:05:34] 2025-05-09 13:28:59,099 | INFO     | current chi2=0.848805195372952 (change=23.076553097882023 %)
[2025-05-09 17:05:34] 2025-05-09 13:28:59,099 | INFO     | left removable region: 30
[2025-05-09 17:05:34] 2025-05-09 13:28:59,099 | INFO     | sum of square deviations: 3627000098.0
[2025-05-09 17:05:34] 2025-05-09 13:28:59,101 | INFO     | sum of deviations: 7799446946.000001
[2025-05-09 17:05:34] 2025-05-09 13:28:59,102 | INFO     | mean x: 1746789905.0
[2025-05-09 17:05:34] 2025-05-09 13:28:59,102 | INFO     | mean y: 2499023.9691629955
[2025-05-09 17:05:34] 2025-05-09 13:28:59,102 | INFO     | -- intersect: -3753771949.7670727
[2025-05-09 17:05:34] 2025-05-09 13:28:59,102 | INFO     | intersect: -3753771949.7670727
[2025-05-09 17:05:34] 2025-05-09 13:28:59,102 | INFO     | chi2: 0.0007359625538645313
[2025-05-09 17:05:34] 2025-05-09 13:28:59,103 | INFO     | -- intersect: -3753771949.7670727
[2025-05-09 17:05:34] 2025-05-09 13:28:59,103 | INFO     | current memory leak: 2.15 B/s (using 227 data points, chi2=0.00)
[2025-05-09 17:05:34] 2025-05-09 13:28:59,103 | INFO     | ..............................
[2025-05-09 17:05:34] 2025-05-09 13:28:59,104 | INFO     | . Timing measurements:
[2025-05-09 17:05:34] 2025-05-09 13:28:59,104 | INFO     | . get job = 0 s
[2025-05-09 17:05:34] 2025-05-09 13:28:59,104 | INFO     | . initial setup = 1 s
[2025-05-09 17:05:34] 2025-05-09 13:28:59,104 | INFO     | . payload setup = 8 s
[2025-05-09 17:05:34] 2025-05-09 13:28:59,104 | INFO     | . stage-in = 0 s
[2025-05-09 17:05:34] 2025-05-09 13:28:59,104 | INFO     | . payload execution = 16043 s
[2025-05-09 17:05:34] 2025-05-09 13:28:59,104 | INFO     | . stage-out = 3 s
[2025-05-09 17:05:34] 2025-05-09 13:28:59,104 | INFO     | . log creation = 1 s
[2025-05-09 17:05:34] 2025-05-09 13:28:59,104 | INFO     | ..............................
[2025-05-09 17:05:34] 2025-05-09 13:28:59,320 | INFO     | 
[2025-05-09 17:05:34] 2025-05-09 13:28:59,320 | INFO     | job summary report
[2025-05-09 17:05:34] 2025-05-09 13:28:59,320 | INFO     | --------------------------------------------------
[2025-05-09 17:05:34] 2025-05-09 13:28:59,320 | INFO     | PanDA job id: 6640030458
[2025-05-09 17:05:34] 2025-05-09 13:28:59,320 | INFO     | task id: 44506063
[2025-05-09 17:05:34] 2025-05-09 13:28:59,320 | INFO     | errors: (none)
[2025-05-09 17:05:34] 2025-05-09 13:28:59,321 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-09 17:05:34] 2025-05-09 13:28:59,321 | INFO     | pilot state: finished 
[2025-05-09 17:05:34] 2025-05-09 13:28:59,321 | INFO     | transexitcode: 0
[2025-05-09 17:05:34] 2025-05-09 13:28:59,321 | INFO     | exeerrorcode: 0
[2025-05-09 17:05:34] 2025-05-09 13:28:59,321 | INFO     | exeerrordiag: 
[2025-05-09 17:05:34] 2025-05-09 13:28:59,321 | INFO     | exitcode: 0
[2025-05-09 17:05:34] 2025-05-09 13:28:59,321 | INFO     | exitmsg: OK
[2025-05-09 17:05:34] 2025-05-09 13:28:59,321 | INFO     | cpuconsumptiontime: 58971 s
[2025-05-09 17:05:34] 2025-05-09 13:28:59,321 | INFO     | nevents: 400
[2025-05-09 17:05:34] 2025-05-09 13:28:59,322 | INFO     | neventsw: 0
[2025-05-09 17:05:34] 2025-05-09 13:28:59,322 | INFO     | pid: 17392
[2025-05-09 17:05:34] 2025-05-09 13:28:59,322 | INFO     | pgrp: 17392
[2025-05-09 17:05:34] 2025-05-09 13:28:59,322 | INFO     | corecount: 8
[2025-05-09 17:05:34] 2025-05-09 13:28:59,322 | INFO     | event service: False
[2025-05-09 17:05:34] 2025-05-09 13:28:59,322 | INFO     | sizes: {0: 2393692, 1: 2393692, 6: 2393926, 12: 2393954, 16055: 2424513, 16061: 2433456, 16062: 2433640, 16172: 2433810}
[2025-05-09 17:05:34] 2025-05-09 13:28:59,322 | INFO     | --------------------------------------------------
[2025-05-09 17:05:34] 2025-05-09 13:28:59,322 | INFO     | 
[2025-05-09 17:05:34] 2025-05-09 13:28:59,322 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-05-09 17:05:34] 2025-05-09 13:29:00,011 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,012 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,012 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,012 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,012 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,012 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,012 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,012 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,012 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,012 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,013 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,013 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,013 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,013 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,013 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,013 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,013 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,013 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-09 17:05:34] 2025-05-09 13:29:00,013 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,014 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-09 17:05:34] 2025-05-09 13:29:00,014 | INFO     | job 6640030458 has completed (purged errors)
[2025-05-09 17:05:34] 2025-05-09 13:29:00,014 | INFO     | overall cleanup function is called
[2025-05-09 17:05:34] 2025-05-09 13:29:01,023 | INFO     | --- collectZombieJob: --- 10, [17392]
[2025-05-09 17:05:34] 2025-05-09 13:29:01,023 | INFO     | zombie collector waiting for pid 17392
[2025-05-09 17:05:34] 2025-05-09 13:29:01,023 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-09 17:05:34] 2025-05-09 13:29:01,023 | INFO     | collected zombie processes
[2025-05-09 17:05:34] 2025-05-09 13:29:01,023 | INFO     | will attempt to kill all subprocesses of pid=17392
[2025-05-09 17:05:34] 2025-05-09 13:29:01,106 | INFO     | process IDs to be killed: [17392] (in reverse order)
[2025-05-09 17:05:34] 2025-05-09 13:29:01,801 | WARNING  | found no corresponding commands to process id(s)
[2025-05-09 17:05:34] 2025-05-09 13:29:01,801 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-09 17:05:34] 2025-05-09 13:29:01,804 | INFO     | did not find any defunct processes belonging to 17392
[2025-05-09 17:05:34] 2025-05-09 13:29:01,805 | INFO     | did not find any defunct processes belonging to 17392
[2025-05-09 17:05:34] 2025-05-09 13:29:01,806 | INFO     | ready for new job
[2025-05-09 17:05:34] 2025-05-09 13:29:01,806 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-09 17:05:34] 2025-05-09 13:29:01,808 | INFO     | **************************************
[2025-05-09 17:05:34] 2025-05-09 13:29:01,808 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-09 17:05:34] 2025-05-09 13:29:01,808 | INFO     | **************************************
[2025-05-09 17:05:34] 2025-05-09 13:29:01,808 | INFO     | 
[2025-05-09 17:05:34] 2025-05-09 13:29:01,809 | INFO     | pilot is running in a VM
[2025-05-09 17:05:34] 2025-05-09 13:29:01,809 | INFO     | architecture information:
[2025-05-09 17:05:34] 2025-05-09 13:29:01,827 | INFO     | executing command: cat /etc/os-release
[2025-05-09 17:05:34] 2025-05-09 13:29:02,159 | INFO     | cat /etc/os-release:
[2025-05-09 17:05:34] NAME="CentOS Linux"
[2025-05-09 17:05:34] VERSION="7 (Core)"
[2025-05-09 17:05:34] ID="centos"
[2025-05-09 17:05:34] ID_LIKE="rhel fedora"
[2025-05-09 17:05:34] VERSION_ID="7"
[2025-05-09 17:05:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-09 17:05:34] ANSI_COLOR="0;31"
[2025-05-09 17:05:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-09 17:05:34] HOME_URL="https://www.centos.org/"
[2025-05-09 17:05:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-09 17:05:34] 
[2025-05-09 17:05:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-09 17:05:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-09 17:05:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-09 17:05:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-09 17:05:34] 
[2025-05-09 17:05:34] 2025-05-09 13:29:02,159 | INFO     | **************************************
[2025-05-09 17:05:34] 2025-05-09 13:29:02,663 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-05-09 17:05:34] 2025-05-09 13:29:02,874 | INFO     | sufficient remaining disk space (495313747968 B)
[2025-05-09 17:05:34] 2025-05-09 13:29:02,875 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-09 17:05:34] 2025-05-09 13:29:02,875 | INFO     | current server update state: UPDATING_FINAL
[2025-05-09 17:05:34] 2025-05-09 13:29:02,875 | INFO     | update_server=False
[2025-05-09 17:05:34] 2025-05-09 13:29:02,875 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-09 17:05:34] 2025-05-09 13:29:03,108 | INFO     | all job control threads have been joined
[2025-05-09 17:05:34] 2025-05-09 13:29:03,158 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-09 17:05:34] 2025-05-09 13:29:03,158 | INFO     | aborting loop
[2025-05-09 17:05:34] 2025-05-09 13:29:03,216 | INFO     | all data control threads have been joined
[2025-05-09 17:05:34] 2025-05-09 13:29:03,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-09 17:05:34] 2025-05-09 13:29:03,506 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-09 17:05:34] 2025-05-09 13:29:03,662 | INFO     | found 0 job(s) in 20 queues
[2025-05-09 17:05:34] 2025-05-09 13:29:03,662 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-09 17:05:34] 2025-05-09 13:29:03,662 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-09 17:05:34] 2025-05-09 13:29:03,881 | INFO     | [job] retrieve thread has finished
[2025-05-09 17:05:34] 2025-05-09 13:29:03,937 | INFO     | [payload] failed_post thread has finished
[2025-05-09 17:05:34] 2025-05-09 13:29:04,062 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-09 17:05:34] 2025-05-09 13:29:04,114 | INFO     | [job] control thread has finished
[2025-05-09 17:05:34] 2025-05-09 13:29:04,164 | INFO     | [job] job monitor thread has finished
[2025-05-09 17:05:34] 2025-05-09 13:29:04,222 | INFO     | [data] control thread has finished
[2025-05-09 17:05:34] 2025-05-09 13:29:04,339 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-09 17:05:34] 2025-05-09 13:29:04,340 | INFO     | all payload control threads have been joined
[2025-05-09 17:05:34] 2025-05-09 13:29:04,812 | INFO     | [job] validate thread has finished
[2025-05-09 17:05:34] 2025-05-09 13:29:04,954 | INFO     | [payload] execute_payloads thread has finished
[2025-05-09 17:05:34] 2025-05-09 13:29:04,997 | INFO     | [payload] validate_pre thread has finished
[2025-05-09 17:05:34] 2025-05-09 13:29:05,244 | INFO     | [data] copytool_in thread has finished
[2025-05-09 17:05:34] 2025-05-09 13:29:05,294 | INFO     | [job] create_data_payload thread has finished
[2025-05-09 17:05:34] 2025-05-09 13:29:05,345 | INFO     | [job] queue monitor thread has finished
[2025-05-09 17:05:34] 2025-05-09 13:29:05,346 | INFO     | [payload] control thread has finished
[2025-05-09 17:05:34] 2025-05-09 13:29:05,381 | INFO     | [payload] validate_post thread has finished
[2025-05-09 17:05:34] 2025-05-09 13:29:05,513 | INFO     | [data] copytool_out thread has finished
[2025-05-09 17:05:34] 2025-05-09 13:29:07,471 | INFO     | [data] queue_monitor thread has finished
[2025-05-09 17:05:34] 2025-05-09 13:29:08,136 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140081146566464)>', '<ExcThread(monitor, started 140080844871424)>']
[2025-05-09 17:05:34] 2025-05-09 13:29:08,691 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-09 17:05:34] 2025-05-09 13:29:08,691 | INFO     | [monitor] control thread has ended
[2025-05-09 17:05:34] 2025-05-09 13:29:13,162 | INFO     | all workflow threads have been joined
[2025-05-09 17:05:34] 2025-05-09 13:29:13,162 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-09 17:05:34] 2025-05-09 13:29:13,162 | INFO     | traces error code: 0
[2025-05-09 17:05:34] 2025-05-09 13:29:13,163 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-09 17:05:34] 2025-05-09 13:29:13,547 [wrapper] ==== pilot stdout END ====
[2025-05-09 17:05:34] 2025-05-09 13:29:13,658 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-09 17:05:34] 2025-05-09 13:29:13,753 [wrapper] pilotpid: 10905
[2025-05-09 17:05:34] 2025-05-09 13:29:13,865 [wrapper] Pilot exit status: 0
[2025-05-09 17:05:34] 2025-05-09 13:29:14,426 [wrapper] pandaids: 6640030458
[2025-05-09 17:05:34] 2025-05-09 13:29:15,142 [wrapper] cleanup supervisor_pilot 15037 10906
[2025-05-09 17:05:34] 2025-05-09 13:29:15,216 [wrapper] Test setup, not cleaning
[2025-05-09 17:05:34] 2025-05-09 13:29:15,343 [wrapper] apfmon messages muted
[2025-05-09 17:05:34] 2025-05-09 13:29:15,464 [wrapper] ==== wrapper stdout END ====
[2025-05-09 17:05:34] 2025-05-09 13:29:15,559 [wrapper] ==== wrapper stderr END ====
[2025-05-09 17:05:34]  *** Error codes and diagnostics ***
[2025-05-09 17:05:34]     "exeErrorCode": 0,
[2025-05-09 17:05:34]     "exeErrorDiag": "",
[2025-05-09 17:05:34]     "pilotErrorCode": 0,
[2025-05-09 17:05:34]     "pilotErrorDiag": "",
[2025-05-09 17:05:34]  *** Listing of results directory ***
[2025-05-09 17:05:34] total 417244
[2025-05-09 17:05:34] -rwx------. 1 boinc boinc     37140 May  8 19:19 runpilot2-wrapper.sh
[2025-05-09 17:05:34] -rw-r--r--. 1 boinc boinc      5111 May  8 19:19 queuedata.json
[2025-05-09 17:05:34] -rw-r--r--. 1 boinc boinc    495897 May  8 19:19 pilot3.tar.gz
[2025-05-09 17:05:34] -rw-r--r--. 1 boinc boinc       100 May  9 10:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-09 17:05:34] -rwxr-xr-x. 1 boinc boinc      7986 May  9 10:58 run_atlas
[2025-05-09 17:05:34] -rw-r--r--. 1 boinc boinc       105 May  9 10:58 job.xml
[2025-05-09 17:05:34] -rw-r--r--. 1 boinc boinc      6371 May  9 10:58 init_data.xml
[2025-05-09 17:05:34] -rw-r--r--. 2 boinc boinc 223059529 May  9 10:58 EVNT.44506061._001750.pool.root.1
[2025-05-09 17:05:34] -rw-r--r--. 2 boinc boinc     17569 May  9 10:58 start_atlas.sh
[2025-05-09 17:05:34] drwxrwx--x. 2 boinc boinc        68 May  9 10:58 shared
[2025-05-09 17:05:34] -rw-r--r--. 2 boinc boinc    508877 May  9 10:58 input.tar.gz
[2025-05-09 17:05:34] -rw-r--r--. 1 boinc boinc         0 May  9 10:58 boinc_lockfile
[2025-05-09 17:05:34] -rw-r--r--. 1 boinc boinc      2560 May  9 10:58 pandaJob.out
[2025-05-09 17:05:34] -rw-------. 1 boinc boinc       424 May  9 10:58 setup.sh.local
[2025-05-09 17:05:34] -rw-------. 1 boinc boinc    997945 May  9 10:59 agis_schedconf.cvmfs.json
[2025-05-09 17:05:34] drwx------. 4 boinc boinc      4096 May  9 10:59 pilot3
[2025-05-09 17:05:34] -rw-------. 1 boinc boinc 196735812 May  9 15:25 HITS.44506063._057312.pool.root.1
[2025-05-09 17:05:34] -rw-r--r--. 1 boinc boinc       531 May  9 15:26 boinc_task_state.xml
[2025-05-09 17:05:34] -rw-------. 1 boinc boinc      1020 May  9 15:26 memory_monitor_summary.json
[2025-05-09 17:05:34] -rw-------. 1 boinc boinc   1596741 May  9 15:27 agis_ddmendpoints.agis.ALL.json
[2025-05-09 17:05:34] -rw-------. 1 boinc boinc    405209 May  9 15:27 log.44506063._057312.job.log.tgz.1
[2025-05-09 17:05:34] -rw-------. 1 boinc boinc        95 May  9 15:28 pilot_heartbeat.json
[2025-05-09 17:05:34] -rw-------. 1 boinc boinc      7692 May  9 15:28 heartbeat.json
[2025-05-09 17:05:34] -rw-------. 1 boinc boinc      4417 May  9 15:29 pilotlog.txt
[2025-05-09 17:05:34] -rw-------. 1 boinc boinc   1411413 May  9 15:29 log.44506063._057312.job.log.1
[2025-05-09 17:05:34] -rw-------. 1 boinc boinc       357 May  9 15:29 output.list
[2025-05-09 17:05:34] -rw-r--r--. 1 boinc boinc       620 May  9 15:29 runtime_log
[2025-05-09 17:05:34] -rw-------. 1 boinc boinc   1832960 May  9 15:29 result.tar.gz
[2025-05-09 17:05:34] -rw-r--r--. 1 boinc boinc     11031 May  9 15:29 runtime_log.err
[2025-05-09 17:05:34] -rw-------. 1 boinc boinc       657 May  9 15:29 MX9MDmU5JX7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmMq9LDm6nCNUm.diag
[2025-05-09 17:05:34] -rw-r--r--. 1 boinc boinc      8192 May  9 17:05 boinc_mmap_file
[2025-05-09 17:05:34] -rw-r--r--. 1 boinc boinc        28 May  9 17:05 wrapper_checkpoint.txt
[2025-05-09 17:05:34] -rw-r--r--. 1 boinc boinc     20488 May  9 17:05 stderr.txt
[2025-05-09 17:05:34] HITS file was successfully produced:
[2025-05-09 17:05:34] -rw-------. 1 boinc boinc 196735812 May  9 15:25 shared/HITS.pool.root.1
[2025-05-09 17:05:34]  *** Contents of shared directory: ***
[2025-05-09 17:05:34] total 412272
[2025-05-09 17:05:34] -rw-r--r--. 2 boinc boinc 223059529 May  9 10:58 ATLAS.root_0
[2025-05-09 17:05:34] -rw-r--r--. 2 boinc boinc     17569 May  9 10:58 start_atlas.sh
[2025-05-09 17:05:34] -rw-r--r--. 2 boinc boinc    508877 May  9 10:58 input.tar.gz
[2025-05-09 17:05:34] -rw-------. 1 boinc boinc 196735812 May  9 15:25 HITS.pool.root.1
[2025-05-09 17:05:34] -rw-------. 1 boinc boinc   1832960 May  9 15:29 result.tar.gz
17:05:36 (7025): run_atlas exited; CPU time 59103.120127
17:05:36 (7025): called boinc_finish(0)

</stderr_txt>
]]>

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