Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-08 19:51:47 (18372): Detected: vboxwrapper 26206
2025-05-08 19:51:47 (18372): Detected: BOINC client v8.0.2
2025-05-08 19:51:48 (18372): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-05-08 19:51:48 (18372): Successfully copied 'init_data.xml' to the shared directory.
2025-05-08 19:51:49 (18372): Create VM. (boinc_36f157a7d6bc7249, slot#5)
2025-05-08 19:51:49 (18372): Setting Memory Size for VM. (4200MB)
2025-05-08 19:51:50 (18372): Setting CPU Count for VM. (2)
2025-05-08 19:51:50 (18372): Setting Chipset Options for VM.
2025-05-08 19:51:50 (18372): Setting Graphics Controller Options for VM.
2025-05-08 19:51:50 (18372): Setting Boot Options for VM.
2025-05-08 19:51:51 (18372): Setting Network Configuration for NAT.
2025-05-08 19:51:51 (18372): Enabling VM Network Access.
2025-05-08 19:51:51 (18372): Disabling USB Support for VM.
2025-05-08 19:51:52 (18372): Disabling COM Port Support for VM.
2025-05-08 19:51:52 (18372): Disabling LPT Port Support for VM.
2025-05-08 19:51:52 (18372): Disabling Audio Support for VM.
2025-05-08 19:51:53 (18372): Disabling Clipboard Support for VM.
2025-05-08 19:51:53 (18372): Disabling Drag and Drop Support for VM.
2025-05-08 19:51:53 (18372): Adding storage controller(s) to VM.
2025-05-08 19:51:54 (18372): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-08 19:51:57 (18372): Adding VirtualBox Guest Additions to VM.
2025-05-08 19:51:57 (18372): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-08 19:51:57 (18372): forwarding host port 63898 to guest port 80
2025-05-08 19:51:58 (18372): Enabling remote desktop for VM.
2025-05-08 19:51:59 (18372): Enabling shared directory for VM.
2025-05-08 19:51:59 (18372): Starting VM using VBoxManage interface. (boinc_36f157a7d6bc7249, slot#5)
2025-05-08 19:52:10 (18372): Successfully started VM. (PID = '14116')
2025-05-08 19:52:10 (18372): Reporting VM Process ID to BOINC.
2025-05-08 19:52:10 (18372): Guest Log: BIOS: VirtualBox 7.1.8
2025-05-08 19:52:10 (18372): Guest Log: CPUID EDX: 0x178bfbff
2025-05-08 19:52:10 (18372): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-08 19:52:10 (18372): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-08 19:52:10 (18372): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-08 19:52:10 (18372): Detected: Web Application Enabled (http://localhost:63898)
2025-05-08 19:52:10 (18372): Detected: Remote Desktop Enabled (localhost:63899)
2025-05-08 19:52:10 (18372): Preference change detected
2025-05-08 19:52:10 (18372): Setting CPU throttle for VM. (100%)
2025-05-08 19:52:10 (18372): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 30 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-08 19:52:12 (18372): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-08 19:52:12 (18372): Guest Log: BIOS: Booting from Hard Disk...
2025-05-08 19:52:15 (18372): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-08 19:52:15 (18372): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-08 19:52:15 (18372): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-08 19:52:22 (18372): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-08 19:52:22 (18372): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-08 19:52:33 (18372): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-08 19:52:33 (18372): Guest Log: 00:00:00.000319 main     Log opened 2025-05-08T19:52:31.770363000Z
2025-05-08 19:52:33 (18372): Guest Log: 00:00:00.000494 main     OS Product: Linux
2025-05-08 19:52:33 (18372): Guest Log: 00:00:00.000564 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-08 19:52:33 (18372): Guest Log: 00:00:00.000609 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-08 19:52:33 (18372): Guest Log: 00:00:00.000650 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-08 19:52:33 (18372): Guest Log: 00:00:00.000651 main     Process ID: 1273
2025-05-08 19:52:33 (18372): Guest Log: 00:00:00.000652 main     Package type: LINUX_64BITS_GENERIC
2025-05-08 19:52:33 (18372): Guest Log: 00:00:00.002550 main     5.2.32 r132073 started. Verbose level = 0
2025-05-08 19:52:33 (18372): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-08 19:52:33 (18372): Guest Log: [INFO] Mounting shared directory
2025-05-08 19:52:33 (18372): Guest Log: [INFO] Checking for init_data.xml
2025-05-08 19:52:41 (18372): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-08 19:52:41 (18372): Guest Log: [INFO] Detected branch: prod
2025-05-08 19:52:41 (18372): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-08 19:52:41 (18372): Guest Log: Copying input files
2025-05-08 19:52:43 (18372): Guest Log: 00:00:10.009161 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 809 179 000ns (GuestNow=1 746 730 362 969 493 000 ns GuestLast=1 746 733 951 778 672 000 ns fSetTimeLastLoop=true )
2025-05-08 19:52:43 (18372): Guest Log: Copied input files into RunAtlas.
2025-05-08 19:52:43 (18372): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-08 19:52:43 (18372): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-08 19:52:43 (18372): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-08 19:52:43 (18372): Guest Log: Further information can be found at the LHC@home message board.
2025-05-08 19:52:53 (18372): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-08 19:52:54 (18372): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-08 19:52:54 (18372): Guest Log: 2.6.3.0 1548 0 30088 145767 4 1 3117346 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-08 19:52:54 (18372): Guest Log: copied the webapp to /var/www
2025-05-08 19:52:54 (18372): Guest Log: ATHENA_PROC_NUMBER=2
2025-05-08 19:52:54 (18372): Guest Log: ATHENA_CORE_NUMBER=2
2025-05-08 19:52:55 (18372): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-08 19:52:55 (18372): Guest Log:  *** Starting ATLAS job. (PandaID=6638758558 taskID=44506063) ***
2025-05-08 21:34:42 (18372): Status Report: Elapsed Time: '6000.000000'
2025-05-08 21:34:42 (18372): Status Report: CPU Time: '9991.250000'
2025-05-08 23:16:47 (18372): Status Report: Elapsed Time: '12000.000000'
2025-05-08 23:16:47 (18372): Status Report: CPU Time: '21784.421875'
2025-05-09 00:58:33 (18372): Status Report: Elapsed Time: '18000.000000'
2025-05-09 00:58:33 (18372): Status Report: CPU Time: '33560.984375'
2025-05-09 02:40:01 (18372): Status Report: Elapsed Time: '24000.000000'
2025-05-09 02:40:01 (18372): Status Report: CPU Time: '45304.000000'
2025-05-09 04:21:54 (18372): Status Report: Elapsed Time: '30000.000000'
2025-05-09 04:21:54 (18372): Status Report: CPU Time: '57086.625000'
2025-05-09 05:28:16 (18372): Guest Log:  *** Job finished ***
2025-05-09 05:28:16 (18372): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:05,530 | INFO     | [payload] run_realtimelog thread has finished
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:05,531 | INFO     | [job] validate thread has finished
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:07,206 | INFO     | [data] queue_monitor thread has finished
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:08,036 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140634696275776)>', '<ExcThread(monitor, started 140634098738944)>']
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:08,207 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:08,207 | INFO     | [monitor] control thread has ended
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:13,039 | INFO     | all workflow threads have been joined
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:13,040 | INFO     | end of generic workflow (traces error code: 0)
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:13,040 | INFO     | traces error code: 0
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:13,040 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:13,181 [wrapper] ==== pilot stdout END ====
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:13,187 [wrapper] ==== wrapper stdout RESUME ====
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:13,193 [wrapper] pilotpid: 5868
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:13,199 [wrapper] Pilot exit status: 0
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:13,320 [wrapper] pandaids: 6638758558
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:13,354 [wrapper] cleanup supervisor_pilot 15540 5869
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:13,376 [wrapper] Test setup, not cleaning
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:13,393 [wrapper] apfmon messages muted
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:13,398 [wrapper] ==== wrapper stdout END ====
2025-05-09 05:28:16 (18372): Guest Log: 2025-05-09 04:28:13,404 [wrapper] ==== wrapper stderr END ====
2025-05-09 05:28:16 (18372): Guest Log:  *** Error codes and diagnostics ***
2025-05-09 05:28:16 (18372): Guest Log:     "exeErrorCode": 0,
2025-05-09 05:28:16 (18372): Guest Log:     "exeErrorDiag": "",
2025-05-09 05:28:16 (18372): Guest Log:     "pilotErrorCode": 0,
2025-05-09 05:28:16 (18372): Guest Log:     "pilotErrorDiag": "",
2025-05-09 05:28:16 (18372): Guest Log:  *** Listing of results directory ***
2025-05-09 05:28:16 (18372): Guest Log: total 204356
2025-05-09 05:28:16 (18372): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May  8 15:40 pilot3.tar.gz
2025-05-09 05:28:16 (18372): Guest Log: -rwx------. 1 atlas atlas     37140 May  8 15:48 runpilot2-wrapper.sh
2025-05-09 05:28:16 (18372): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May  8 15:48 queuedata.json
2025-05-09 05:28:16 (18372): Guest Log: -rwxr-xr-x. 1 atlas atlas      8868 May  8 18:52 init_data.xml
2025-05-09 05:28:16 (18372): Guest Log: -rwxr-xr-x. 1 atlas atlas    508887 May  8 18:52 input.tar.gz
2025-05-09 05:28:16 (18372): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May  8 18:52 start_atlas.sh
2025-05-09 05:28:16 (18372): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May  8 18:52 EVNT.44506061._001370.pool.root.1 -> /data/./ATLAS.root_0
2025-05-09 05:28:16 (18372): Guest Log: -rw-r--r--. 1 atlas atlas      2557 May  8 18:52 pandaJob.out
2025-05-09 05:28:17 (18372): Guest Log: -rw-------. 1 atlas atlas       424 May  8 18:53 setup.sh.local
2025-05-09 05:28:17 (18372): Guest Log: -rw-------. 1 atlas atlas    997871 May  8 18:54 agis_schedconf.cvmfs.json
2025-05-09 05:28:17 (18372): Guest Log: drwx------. 4 atlas atlas      4096 May  8 18:54 pilot3
2025-05-09 05:28:17 (18372): Guest Log: -rw-------. 1 atlas atlas 198529320 May  9 04:27 HITS.44506063._056357.pool.root.1
2025-05-09 05:28:17 (18372): Guest Log: -rw-------. 1 atlas atlas        95 May  9 04:27 pilot_heartbeat.json
2025-05-09 05:28:17 (18372): Guest Log: -rw-------. 1 atlas atlas      1029 May  9 04:27 memory_monitor_summary.json
2025-05-09 05:28:17 (18372): Guest Log: -rw-------. 1 atlas atlas   1596741 May  9 04:27 agis_ddmendpoints.agis.ALL.json
2025-05-09 05:28:17 (18372): Guest Log: -rw-------. 1 atlas atlas    489860 May  9 04:27 log.44506063._056357.job.log.tgz.1
2025-05-09 05:28:17 (18372): Guest Log: -rw-------. 1 atlas atlas      7686 May  9 04:28 heartbeat.json
2025-05-09 05:28:17 (18372): Guest Log: -rw-------. 1 atlas atlas      4536 May  9 04:28 pilotlog.txt
2025-05-09 05:28:17 (18372): Guest Log: -rw-------. 1 atlas atlas   2984101 May  9 04:28 log.44506063._056357.job.log.1
2025-05-09 05:28:17 (18372): Guest Log: -rw-------. 1 atlas atlas       357 May  9 04:28 output.list
2025-05-09 05:28:17 (18372): Guest Log: -rw-r--r--. 1 atlas atlas       620 May  9 04:28 runtime_log
2025-05-09 05:28:17 (18372): Guest Log: -rw-------. 1 atlas atlas   3491840 May  9 04:28 result.tar.gz
2025-05-09 05:28:17 (18372): Guest Log: -rw-------. 1 atlas atlas       658 May  9 04:28 aDtNDmYfIX7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmfh9LDmrMvsFo.diag
2025-05-09 05:28:17 (18372): Guest Log: -rw-r--r--. 1 atlas atlas     10929 May  9 04:28 runtime_log.err
2025-05-09 05:28:17 (18372): Guest Log: Looking for outputfile HITS.44506063._056357.pool.root.1
2025-05-09 05:28:17 (18372): Guest Log: HITS file was successfully produced
2025-05-09 05:28:17 (18372): Guest Log: -rw-------. 1 atlas atlas 198529320 May  9 04:27 /home/atlas/RunAtlas/HITS.44506063._056357.pool.root.1
2025-05-09 05:28:17 (18372): Guest Log: Successfully finished the ATLAS job!
2025-05-09 05:28:17 (18372): Guest Log: Copying the results back to the shared directory!
2025-05-09 05:28:17 (18372): Guest Log:  *** Contents of shared directory: ***
2025-05-09 05:28:17 (18372): Guest Log: total 418348
2025-05-09 05:28:17 (18372): Guest Log: -rwxrwxrwx. 1 root root 225814986 May  8 18:51 ATLAS.root_0
2025-05-09 05:28:17 (18372): Guest Log: -rwxrwxrwx. 1 root root 198529320 May  9 04:28 HITS.pool.root.1
2025-05-09 05:28:17 (18372): Guest Log: -rwxrwxrwx. 1 root root      8868 May  8 18:51 init_data.xml
2025-05-09 05:28:17 (18372): Guest Log: -rwxrwxrwx. 1 root root    508887 May  8 18:47 input.tar.gz
2025-05-09 05:28:17 (18372): Guest Log: -rwxrwxrwx. 1 root root   3491840 May  9 04:28 result.tar.gz
2025-05-09 05:28:17 (18372): Guest Log: -rwxrwxrwx. 1 root root     17569 May  8 18:47 start_atlas.sh
2025-05-09 05:28:17 (18372): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-09 05:28:17 (18372): VM Completion File Detected.
2025-05-09 05:28:17 (18372): Powering off VM.
2025-05-09 05:28:18 (18372): Successfully stopped VM.
2025-05-09 05:28:18 (18372): Deregistering VM. (boinc_36f157a7d6bc7249, slot#5)
2025-05-09 05:28:18 (18372): Removing network bandwidth throttle group from VM.
2025-05-09 05:28:18 (18372): Removing VM from VirtualBox.
05:28:23 (18372): called boinc_finish(0)

</stderr_txt>
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