Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:13:25 (3465888): wrapper (7.7.26015): starting
16:13:25 (3465888): wrapper: running run_atlas (--nthreads 12)
[2025-05-08 16:13:25] Arguments: --nthreads 12
[2025-05-08 16:13:25] Threads: 12
[2025-05-08 16:13:25] Checking for CVMFS
[2025-05-08 16:13:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-08 16:13:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-08 16:13:25] Running cvmfs_config stat atlas.cern.ch
[2025-05-08 16:13:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-08 16:13:25] 2.12.7.0 3220126 13164 260316 145757 2 187 31408519 46080001 6454 130560 0 206516730 99.902 55009702 19812 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-05-08 16:13:25] CVMFS is ok
[2025-05-08 16:13:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-08 16:13:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-08 16:13:25] Further information can be found at the LHC@home message board.
[2025-05-08 16:13:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-08 16:13:25] Checking for apptainer binary...
[2025-05-08 16:13:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-08 16:13:25] Running /usr/bin/apptainer --version
[2025-05-08 16:13:25] apptainer version 1.4.0-1.el9
[2025-05-08 16:13:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-08 16:13:25] mff2104.farm.particle.cz
[2025-05-08 16:13:25] apptainer works
[2025-05-08 16:13:25] Set ATHENA_PROC_NUMBER=12
[2025-05-08 16:13:25] Set ATHENA_CORE_NUMBER=12
[2025-05-08 16:13:25] Starting ATLAS job with PandaID=6636700753
[2025-05-08 16:13:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-08 17:14:16]  *** The last 200 lines of the pilot log: ***
[2025-05-08 17:14:16]  is_altstaged=None
[2025-05-08 17:14:16]  is_tar=False
[2025-05-08 17:14:16]  lfn=log.44506063._035452.job.log.tgz.1
[2025-05-08 17:14:16]  mtime=0
[2025-05-08 17:14:16]  protocol_id=None
[2025-05-08 17:14:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-05-08 17:14:16]  replicas=None
[2025-05-08 17:14:16]  scope=mc23_13p6TeV
[2025-05-08 17:14:16]  status=None
[2025-05-08 17:14:16]  status_code=0
[2025-05-08 17:14:16]  storage_token=
[2025-05-08 17:14:16]  surl=/scratch/.boinc/slots/4/PanDA_Pilot-6636700753/log.44506063._035452.job.log.tgz.1
[2025-05-08 17:14:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fc/0c/log.44506063._035452.job.log.tgz.1
[2025-05-08 17:14:16]  workdir=None
[2025-05-08 17:14:16] ]
[2025-05-08 17:14:16] 2025-05-08 15:13:46,773 | INFO     | transferring file log.44506063._035452.job.log.tgz.1 from /scratch/.boinc/slots/4/PanDA_Pilot-6636700753/log.44506063._035452.job.log.tgz.1 to /scratch/.boinc/slot
[2025-05-08 17:14:16] 2025-05-08 15:13:46,773 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/4/PanDA_Pilot-6636700753/log.44506063._035452.job.log.tgz.1 /scratch/.boinc/slots/4/log.44506063._035452.j
[2025-05-08 17:14:16] 2025-05-08 15:13:46,800 | INFO     | adding to output.list: log.44506063._035452.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fc/0c/log.44506063._035452.job.log.tg
[2025-05-08 17:14:16] 2025-05-08 15:13:46,802 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-08 17:14:16] 2025-05-08 15:13:46,802 | INFO     | summary of transferred files:
[2025-05-08 17:14:16] 2025-05-08 15:13:46,802 | INFO     |  -- lfn=log.44506063._035452.job.log.tgz.1, status_code=0, status=transferred
[2025-05-08 17:14:16] 2025-05-08 15:13:46,802 | INFO     | stage-out finished correctly
[2025-05-08 17:14:16] 2025-05-08 15:13:47,479 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-08 17:14:16] 2025-05-08 15:13:47,963 | INFO     | monitor loop #268: job 0:6636700753 is in state 'finished'
[2025-05-08 17:14:16] 2025-05-08 15:13:48,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-08 17:14:16] 2025-05-08 15:13:49,987 | INFO     | job 6636700753 has state=finished
[2025-05-08 17:14:16] 2025-05-08 15:13:49,988 | INFO     | preparing for final server update for job 6636700753 in state='finished'
[2025-05-08 17:14:16] 2025-05-08 15:13:49,988 | INFO     | this job has now completed (state=finished)
[2025-05-08 17:14:16] 2025-05-08 15:13:49,989 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-08 17:14:16] 2025-05-08 15:13:49,989 | INFO     | log transfer has been attempted: DONE
[2025-05-08 17:14:16] 2025-05-08 15:13:49,989 | INFO     | job 6636700753 has finished - writing final server update
[2025-05-08 17:14:16] 2025-05-08 15:13:49,989 | INFO     | total number of processed events: 400 (read)
[2025-05-08 17:14:16] 2025-05-08 15:13:49,996 | INFO     | executing command: lscpu
[2025-05-08 17:14:16] 2025-05-08 15:13:50,093 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-08 17:14:16] 2025-05-08 15:13:50,539 | INFO     | monitor loop #269: job 0:6636700753 is in state 'finished'
[2025-05-08 17:14:16] 2025-05-08 15:13:50,540 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-08 17:14:16] 2025-05-08 15:13:53,045 | INFO     | monitor loop #270: job 0:6636700753 is in state 'finished'
[2025-05-08 17:14:16] 2025-05-08 15:13:53,078 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-08 17:14:16] 2025-05-08 15:13:55,581 | INFO     | monitor loop #271: job 0:6636700753 is in state 'finished'
[2025-05-08 17:14:16] 2025-05-08 15:13:55,581 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-08 17:14:16] 2025-05-08 15:13:56,397 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-08 17:14:16] 2025-05-08 15:13:56,398 | INFO     | using path: /scratch/.boinc/slots/4/PanDA_Pilot-6636700753/memory_monitor_summary.json (trf name=prmon)
[2025-05-08 17:14:16] 2025-05-08 15:13:56,399 | INFO     | extracted standard info from prmon json
[2025-05-08 17:14:16] 2025-05-08 15:13:56,399 | INFO     | extracted standard memory fields from prmon json
[2025-05-08 17:14:16] 2025-05-08 15:13:56,399 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-08 17:14:16] 2025-05-08 15:13:56,400 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-08 17:14:16] 2025-05-08 15:13:56,400 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-08 17:14:16] 2025-05-08 15:13:56,402 | INFO     | fitting pss+swap vs Time
[2025-05-08 17:14:16] 2025-05-08 15:13:56,402 | INFO     | sum of square deviations: 43584073.0
[2025-05-08 17:14:16] 2025-05-08 15:13:56,402 | INFO     | sum of deviations: 13250716551.500002
[2025-05-08 17:14:16] 2025-05-08 15:13:56,402 | INFO     | mean x: 1746715508.5
[2025-05-08 17:14:16] 2025-05-08 15:13:56,403 | INFO     | mean y: 2514698.826923077
[2025-05-08 17:14:16] 2025-05-08 15:13:56,403 | INFO     | -- intersect: -531045423368.88635
[2025-05-08 17:14:16] 2025-05-08 15:13:56,403 | INFO     | intersect: -531045423368.88635
[2025-05-08 17:14:16] 2025-05-08 15:13:56,403 | INFO     | chi2: 1.7372433980025492
[2025-05-08 17:14:16] 2025-05-08 15:13:56,403 | INFO     | -- intersect: -531045423368.88635
[2025-05-08 17:14:16] 2025-05-08 15:13:56,403 | INFO     | current memory leak: 304.03 B/s (using 52 data points, chi2=1.74)
[2025-05-08 17:14:16] 2025-05-08 15:13:56,404 | INFO     | ..............................
[2025-05-08 17:14:16] 2025-05-08 15:13:56,404 | INFO     | . Timing measurements:
[2025-05-08 17:14:16] 2025-05-08 15:13:56,404 | INFO     | . get job = 0 s
[2025-05-08 17:14:16] 2025-05-08 15:13:56,404 | INFO     | . initial setup = 1 s
[2025-05-08 17:14:16] 2025-05-08 15:13:56,404 | INFO     | . payload setup = 7 s
[2025-05-08 17:14:16] 2025-05-08 15:13:56,404 | INFO     | . stage-in = 0 s
[2025-05-08 17:14:16] 2025-05-08 15:13:56,404 | INFO     | . payload execution = 3580 s
[2025-05-08 17:14:16] 2025-05-08 15:13:56,404 | INFO     | . stage-out = 0 s
[2025-05-08 17:14:16] 2025-05-08 15:13:56,404 | INFO     | . log creation = 0 s
[2025-05-08 17:14:16] 2025-05-08 15:13:56,404 | INFO     | ..............................
[2025-05-08 17:14:16] 2025-05-08 15:13:56,505 | INFO     | 
[2025-05-08 17:14:16] 2025-05-08 15:13:56,505 | INFO     | job summary report
[2025-05-08 17:14:16] 2025-05-08 15:13:56,505 | INFO     | --------------------------------------------------
[2025-05-08 17:14:16] 2025-05-08 15:13:56,505 | INFO     | PanDA job id: 6636700753
[2025-05-08 17:14:16] 2025-05-08 15:13:56,505 | INFO     | task id: 44506063
[2025-05-08 17:14:16] 2025-05-08 15:13:56,506 | INFO     | errors: (none)
[2025-05-08 17:14:16] 2025-05-08 15:13:56,506 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-08 17:14:16] 2025-05-08 15:13:56,506 | INFO     | pilot state: finished 
[2025-05-08 17:14:16] 2025-05-08 15:13:56,506 | INFO     | transexitcode: 0
[2025-05-08 17:14:16] 2025-05-08 15:13:56,506 | INFO     | exeerrorcode: 0
[2025-05-08 17:14:16] 2025-05-08 15:13:56,506 | INFO     | exeerrordiag: 
[2025-05-08 17:14:16] 2025-05-08 15:13:56,506 | INFO     | exitcode: 0
[2025-05-08 17:14:16] 2025-05-08 15:13:56,506 | INFO     | exitmsg: OK
[2025-05-08 17:14:16] 2025-05-08 15:13:56,506 | INFO     | cpuconsumptiontime: 33290 s
[2025-05-08 17:14:16] 2025-05-08 15:13:56,506 | INFO     | nevents: 400
[2025-05-08 17:14:16] 2025-05-08 15:13:56,506 | INFO     | neventsw: 0
[2025-05-08 17:14:16] 2025-05-08 15:13:56,506 | INFO     | pid: 3481411
[2025-05-08 17:14:16] 2025-05-08 15:13:56,507 | INFO     | pgrp: 3481411
[2025-05-08 17:14:16] 2025-05-08 15:13:56,507 | INFO     | corecount: 12
[2025-05-08 17:14:16] 2025-05-08 15:13:56,507 | INFO     | event service: False
[2025-05-08 17:14:16] 2025-05-08 15:13:56,507 | INFO     | sizes: {0: 2393740, 6: 2393946, 11: 2393974, 3590: 2419645, 3591: 2419644, 3592: 2428643, 3593: 2428827, 3602: 2428997}
[2025-05-08 17:14:16] 2025-05-08 15:13:56,507 | INFO     | --------------------------------------------------
[2025-05-08 17:14:16] 2025-05-08 15:13:56,507 | INFO     | 
[2025-05-08 17:14:16] 2025-05-08 15:13:56,507 | INFO     | executing command: ls -lF /scratch/.boinc/slots/4
[2025-05-08 17:14:16] 2025-05-08 15:13:56,534 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,534 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,534 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,534 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,534 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,535 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,535 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,535 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,535 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,535 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,535 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,535 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,535 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,535 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,535 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,535 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,535 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,536 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-08 17:14:16] 2025-05-08 15:13:56,536 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,536 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-08 17:14:16] 2025-05-08 15:13:56,536 | INFO     | job 6636700753 has completed (purged errors)
[2025-05-08 17:14:16] 2025-05-08 15:13:56,536 | INFO     | overall cleanup function is called
[2025-05-08 17:14:16] 2025-05-08 15:13:57,545 | INFO     | --- collectZombieJob: --- 10, [3481411]
[2025-05-08 17:14:16] 2025-05-08 15:13:57,545 | INFO     | zombie collector waiting for pid 3481411
[2025-05-08 17:14:16] 2025-05-08 15:13:57,545 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-08 17:14:16] 2025-05-08 15:13:57,546 | INFO     | collected zombie processes
[2025-05-08 17:14:16] 2025-05-08 15:13:57,546 | INFO     | will attempt to kill all subprocesses of pid=3481411
[2025-05-08 17:14:16] 2025-05-08 15:13:57,892 | INFO     | process IDs to be killed: [3481411] (in reverse order)
[2025-05-08 17:14:16] 2025-05-08 15:13:58,007 | WARNING  | found no corresponding commands to process id(s)
[2025-05-08 17:14:16] 2025-05-08 15:13:58,007 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-08 17:14:16] 2025-05-08 15:13:58,092 | INFO     | did not find any defunct processes belonging to 3481411
[2025-05-08 17:14:16] 2025-05-08 15:13:58,104 | INFO     | did not find any defunct processes belonging to 3481411
[2025-05-08 17:14:16] 2025-05-08 15:13:58,104 | INFO     | ready for new job
[2025-05-08 17:14:16] 2025-05-08 15:13:58,104 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-08 17:14:16] 2025-05-08 15:13:58,106 | INFO     | **************************************
[2025-05-08 17:14:16] 2025-05-08 15:13:58,106 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-08 17:14:16] 2025-05-08 15:13:58,106 | INFO     | **************************************
[2025-05-08 17:14:16] 2025-05-08 15:13:58,106 | INFO     | 
[2025-05-08 17:14:16] 2025-05-08 15:13:58,113 | INFO     | architecture information:
[2025-05-08 17:14:16] 2025-05-08 15:13:58,113 | INFO     | executing command: cat /etc/os-release
[2025-05-08 17:14:16] 2025-05-08 15:13:58,137 | INFO     | cat /etc/os-release:
[2025-05-08 17:14:16] NAME="CentOS Linux"
[2025-05-08 17:14:16] VERSION="7 (Core)"
[2025-05-08 17:14:16] ID="centos"
[2025-05-08 17:14:16] ID_LIKE="rhel fedora"
[2025-05-08 17:14:16] VERSION_ID="7"
[2025-05-08 17:14:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-08 17:14:16] ANSI_COLOR="0;31"
[2025-05-08 17:14:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-08 17:14:16] HOME_URL="https://www.centos.org/"
[2025-05-08 17:14:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-08 17:14:16] 
[2025-05-08 17:14:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-08 17:14:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-08 17:14:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-08 17:14:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-08 17:14:16] 
[2025-05-08 17:14:16] 2025-05-08 15:13:58,137 | INFO     | **************************************
[2025-05-08 17:14:16] 2025-05-08 15:13:58,640 | INFO     | executing command: df -mP /scratch/.boinc/slots/4
[2025-05-08 17:14:16] 2025-05-08 15:13:58,664 | INFO     | sufficient remaining disk space (1680987914240 B)
[2025-05-08 17:14:16] 2025-05-08 15:13:58,664 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-08 17:14:16] 2025-05-08 15:13:58,665 | INFO     | current server update state: UPDATING_FINAL
[2025-05-08 17:14:16] 2025-05-08 15:13:58,665 | INFO     | update_server=False
[2025-05-08 17:14:16] 2025-05-08 15:13:58,665 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-08 17:14:16] 2025-05-08 15:13:58,665 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-08 17:14:16] 2025-05-08 15:13:58,937 | INFO     | all data control threads have been joined
[2025-05-08 17:14:16] 2025-05-08 15:13:59,089 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-08 17:14:16] 2025-05-08 15:13:59,090 | INFO     | aborting loop
[2025-05-08 17:14:16] 2025-05-08 15:13:59,639 | INFO     | found 0 job(s) in 20 queues
[2025-05-08 17:14:16] 2025-05-08 15:13:59,639 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-08 17:14:16] 2025-05-08 15:13:59,639 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-08 17:14:16] 2025-05-08 15:13:59,670 | INFO     | [job] retrieve thread has finished
[2025-05-08 17:14:16] 2025-05-08 15:13:59,879 | INFO     | [payload] execute_payloads thread has finished
[2025-05-08 17:14:16] 2025-05-08 15:13:59,913 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-08 17:14:16] 2025-05-08 15:13:59,942 | INFO     | [data] control thread has finished
[2025-05-08 17:14:16] 2025-05-08 15:13:59,954 | INFO     | all payload control threads have been joined
[2025-05-08 17:14:16] 2025-05-08 15:13:59,965 | INFO     | [data] copytool_in thread has finished
[2025-05-08 17:14:16] 2025-05-08 15:14:00,059 | INFO     | [job] create_data_payload thread has finished
[2025-05-08 17:14:16] 2025-05-08 15:14:00,095 | INFO     | [job] job monitor thread has finished
[2025-05-08 17:14:16] 2025-05-08 15:14:00,111 | INFO     | all job control threads have been joined
[2025-05-08 17:14:16] 2025-05-08 15:14:00,125 | INFO     | [payload] validate_pre thread has finished
[2025-05-08 17:14:16] 2025-05-08 15:14:00,881 | INFO     | [payload] validate_post thread has finished
[2025-05-08 17:14:16] 2025-05-08 15:14:00,924 | INFO     | [payload] failed_post thread has finished
[2025-05-08 17:14:16] 2025-05-08 15:14:00,959 | INFO     | [payload] control thread has finished
[2025-05-08 17:14:16] 2025-05-08 15:14:01,115 | INFO     | [job] control thread has finished
[2025-05-08 17:14:16] 2025-05-08 15:14:01,165 | INFO     | [job] validate thread has finished
[2025-05-08 17:14:16] 2025-05-08 15:14:01,515 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-08 17:14:16] 2025-05-08 15:14:01,918 | INFO     | [data] copytool_out thread has finished
[2025-05-08 17:14:16] 2025-05-08 15:14:02,520 | INFO     | [job] queue monitor thread has finished
[2025-05-08 17:14:16] 2025-05-08 15:14:02,671 | INFO     | [data] queue_monitor thread has finished
[2025-05-08 17:14:16] 2025-05-08 15:14:09,481 | INFO     | job.realtimelogging is not enabled
[2025-05-08 17:14:16] 2025-05-08 15:14:10,486 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-08 17:14:16] 2025-05-08 15:14:11,284 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139903246550848)>', '<ExcThread(monitor, started 139902880556800)>']
[2025-05-08 17:14:16] 2025-05-08 15:14:11,700 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-08 17:14:16] 2025-05-08 15:14:11,701 | INFO     | [monitor] control thread has ended
[2025-05-08 17:14:16] 2025-05-08 15:14:16,294 | INFO     | all workflow threads have been joined
[2025-05-08 17:14:16] 2025-05-08 15:14:16,294 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-08 17:14:16] 2025-05-08 15:14:16,295 | INFO     | traces error code: 0
[2025-05-08 17:14:16] 2025-05-08 15:14:16,295 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-08 17:14:16] 2025-05-08 15:14:16,485 [wrapper] ==== pilot stdout END ====
[2025-05-08 17:14:16] 2025-05-08 15:14:16,488 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-08 17:14:16] 2025-05-08 15:14:16,492 [wrapper] pilotpid: 3469898
[2025-05-08 17:14:16] 2025-05-08 15:14:16,495 [wrapper] Pilot exit status: 0
[2025-05-08 17:14:16] 2025-05-08 15:14:16,511 [wrapper] pandaids: 6636700753
[2025-05-08 17:14:16] 2025-05-08 15:14:16,591 [wrapper] cleanup supervisor_pilot 3674360 3469899
[2025-05-08 17:14:16] 2025-05-08 15:14:16,596 [wrapper] Test setup, not cleaning
[2025-05-08 17:14:16] 2025-05-08 15:14:16,599 [wrapper] apfmon messages muted
[2025-05-08 17:14:16] 2025-05-08 15:14:16,603 [wrapper] ==== wrapper stdout END ====
[2025-05-08 17:14:16] 2025-05-08 15:14:16,607 [wrapper] ==== wrapper stderr END ====
[2025-05-08 17:14:16]  *** Error codes and diagnostics ***
[2025-05-08 17:14:16]     "exeErrorCode": 0,
[2025-05-08 17:14:16]     "exeErrorDiag": "",
[2025-05-08 17:14:16]     "pilotErrorCode": 0,
[2025-05-08 17:14:16]     "pilotErrorDiag": "",
[2025-05-08 17:14:16]  *** Listing of results directory ***
[2025-05-08 17:14:16] total 411928
[2025-05-08 17:14:16] -rw-r--r-- 1 boinc boinc      5111 May  7 09:07 queuedata.json
[2025-05-08 17:14:16] -rwx------ 1 boinc boinc     37140 May  7 09:08 runpilot2-wrapper.sh
[2025-05-08 17:14:16] -rw-r--r-- 1 boinc boinc    495897 May  7 09:08 pilot3.tar.gz
[2025-05-08 17:14:16] -rw-r--r-- 1 boinc boinc       100 May  8 16:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-08 17:14:16] -rwxr-xr-x 1 boinc boinc      7986 May  8 16:13 run_atlas
[2025-05-08 17:14:16] -rw-r--r-- 1 boinc boinc       105 May  8 16:13 job.xml
[2025-05-08 17:14:16] -rw-r--r-- 1 boinc boinc      6654 May  8 16:13 init_data.xml
[2025-05-08 17:14:16] -rw-r--r-- 2 boinc boinc 222945120 May  8 16:13 EVNT.44506061._001390.pool.root.1
[2025-05-08 17:14:16] -rw-r--r-- 2 boinc boinc     17569 May  8 16:13 start_atlas.sh
[2025-05-08 17:14:16] drwxrwx--x 2 boinc boinc      4096 May  8 16:13 shared
[2025-05-08 17:14:16] -rw-r--r-- 2 boinc boinc    508871 May  8 16:13 input.tar.gz
[2025-05-08 17:14:16] -rw-r--r-- 1 boinc boinc         0 May  8 16:13 boinc_lockfile
[2025-05-08 17:14:16] -rw-r--r-- 1 boinc boinc      2558 May  8 16:13 pandaJob.out
[2025-05-08 17:14:16] -rw------- 1 boinc boinc       424 May  8 16:13 setup.sh.local
[2025-05-08 17:14:16] -rw------- 1 boinc boinc    997893 May  8 16:13 agis_schedconf.cvmfs.json
[2025-05-08 17:14:16] -rw------- 1 boinc boinc   1596741 May  8 16:13 agis_ddmendpoints.agis.ALL.json
[2025-05-08 17:14:16] drwx------ 4 boinc boinc      4096 May  8 16:13 pilot3
[2025-05-08 17:14:16] -rw------- 1 boinc boinc 193589722 May  8 17:13 HITS.44506063._035452.pool.root.1
[2025-05-08 17:14:16] -rw-r--r-- 1 boinc boinc       529 May  8 17:13 boinc_task_state.xml
[2025-05-08 17:14:16] -rw------- 1 boinc boinc      1022 May  8 17:13 memory_monitor_summary.json
[2025-05-08 17:14:16] -rw------- 1 boinc boinc    347945 May  8 17:13 log.44506063._035452.job.log.tgz.1
[2025-05-08 17:14:16] -rw------- 1 boinc boinc        95 May  8 17:13 pilot_heartbeat.json
[2025-05-08 17:14:16] -rw------- 1 boinc boinc      7690 May  8 17:13 heartbeat.json
[2025-05-08 17:14:16] -rw-r--r-- 1 boinc boinc      8192 May  8 17:14 boinc_mmap_file
[2025-05-08 17:14:16] -rw-r--r-- 1 boinc boinc        27 May  8 17:14 wrapper_checkpoint.txt
[2025-05-08 17:14:16] -rw------- 1 boinc boinc      4428 May  8 17:14 pilotlog.txt
[2025-05-08 17:14:16] -rw------- 1 boinc boinc    365940 May  8 17:14 log.44506063._035452.job.log.1
[2025-05-08 17:14:16] -rw------- 1 boinc boinc       357 May  8 17:14 output.list
[2025-05-08 17:14:16] -rw-r--r-- 1 boinc boinc       620 May  8 17:14 runtime_log
[2025-05-08 17:14:16] -rw------- 1 boinc boinc    737280 May  8 17:14 result.tar.gz
[2025-05-08 17:14:16] -rw-r--r-- 1 boinc boinc     11078 May  8 17:14 runtime_log.err
[2025-05-08 17:14:16] -rw------- 1 boinc boinc       662 May  8 17:14 h8tLDmb4nW7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmGC6LDmaBr74m.diag
[2025-05-08 17:14:16] -rw-r--r-- 1 boinc boinc     21443 May  8 17:14 stderr.txt
[2025-05-08 17:14:16] HITS file was successfully produced:
[2025-05-08 17:14:16] -rw------- 1 boinc boinc 193589722 May  8 17:13 shared/HITS.pool.root.1
[2025-05-08 17:14:16]  *** Contents of shared directory: ***
[2025-05-08 17:14:16] total 408024
[2025-05-08 17:14:16] -rw-r--r-- 2 boinc boinc 222945120 May  8 16:13 ATLAS.root_0
[2025-05-08 17:14:16] -rw-r--r-- 2 boinc boinc     17569 May  8 16:13 start_atlas.sh
[2025-05-08 17:14:16] -rw-r--r-- 2 boinc boinc    508871 May  8 16:13 input.tar.gz
[2025-05-08 17:14:16] -rw------- 1 boinc boinc 193589722 May  8 17:13 HITS.pool.root.1
[2025-05-08 17:14:16] -rw------- 1 boinc boinc    737280 May  8 17:14 result.tar.gz
17:14:18 (3465888): run_atlas exited; CPU time 33360.658788
17:14:18 (3465888): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN