Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
17:08:24 (1478932): wrapper (7.7.26015): starting
17:08:24 (1478932): wrapper: running run_atlas (--nthreads 4)
[2025-05-08 17:08:24] Arguments: --nthreads 4
[2025-05-08 17:08:24] Threads: 4
[2025-05-08 17:08:24] Checking for CVMFS
[2025-05-08 17:08:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-08 17:08:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-08 17:08:25] Running cvmfs_config stat atlas.cern.ch
[2025-05-08 17:08:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-08 17:08:25] 2.9.2.0 13847 4897 94916 145761 0 55 36640072 36864000 0 130560 0 3723553 99.990 1190274 7953 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-05-08 17:08:25] CVMFS is ok
[2025-05-08 17:08:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-08 17:08:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-08 17:08:25] Further information can be found at the LHC@home message board.
[2025-05-08 17:08:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-08 17:08:25] Checking for apptainer binary...
[2025-05-08 17:08:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-08 17:08:25] Running /usr/bin/apptainer --version
[2025-05-08 17:08:25] apptainer version 1.3.6-6.1
[2025-05-08 17:08:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-08 17:08:25] cosA131b
[2025-05-08 17:08:25] apptainer works
[2025-05-08 17:08:25] Set ATHENA_PROC_NUMBER=4
[2025-05-08 17:08:25] Set ATHENA_CORE_NUMBER=4
[2025-05-08 17:08:25] Starting ATLAS job with PandaID=6637936533
[2025-05-08 17:08:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-08 18:34:26]  *** The last 200 lines of the pilot log: ***
[2025-05-08 18:34:26]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-05-08 18:34:26]  is_altstaged=None
[2025-05-08 18:34:26]  is_tar=False
[2025-05-08 18:34:26]  lfn=log.44506063._047846.job.log.tgz.1
[2025-05-08 18:34:26]  mtime=0
[2025-05-08 18:34:26]  protocol_id=None
[2025-05-08 18:34:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-05-08 18:34:26]  replicas=None
[2025-05-08 18:34:26]  scope=mc23_13p6TeV
[2025-05-08 18:34:26]  status=None
[2025-05-08 18:34:26]  status_code=0
[2025-05-08 18:34:26]  storage_token=
[2025-05-08 18:34:26]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6637936533/log.44506063._047846.job.log.tgz.1
[2025-05-08 18:34:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/6c/log.44506063._047846.job.log.tgz.1
[2025-05-08 18:34:26]  workdir=None
[2025-05-08 18:34:26] ]
[2025-05-08 18:34:26] 2025-05-08 16:34:00,368 | INFO     | transferring file log.44506063._047846.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6637936533/log.44506063._047846.job.log.tgz.1 to /local/data/boinc/
[2025-05-08 18:34:26] 2025-05-08 16:34:00,368 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6637936533/log.44506063._047846.job.log.tgz.1 /local/data/boinc/slots/0/log.44506063._0478
[2025-05-08 18:34:26] 2025-05-08 16:34:00,375 | INFO     | number of running child processes to parent process 1489249: 1
[2025-05-08 18:34:26] 2025-05-08 16:34:00,375 | INFO     | maximum number of monitored processes: 6
[2025-05-08 18:34:26] 2025-05-08 16:34:00,388 | INFO     | adding to output.list: log.44506063._047846.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/6c/log.44506063._047846.job.log.tg
[2025-05-08 18:34:26] 2025-05-08 16:34:00,389 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-08 18:34:26] 2025-05-08 16:34:00,389 | INFO     | summary of transferred files:
[2025-05-08 18:34:26] 2025-05-08 16:34:00,389 | INFO     |  -- lfn=log.44506063._047846.job.log.tgz.1, status_code=0, status=transferred
[2025-05-08 18:34:26] 2025-05-08 16:34:00,389 | INFO     | stage-out finished correctly
[2025-05-08 18:34:26] 2025-05-08 16:34:00,428 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-08 18:34:26] 2025-05-08 16:34:02,406 | INFO     | job 6637936533 has state=finished
[2025-05-08 18:34:26] 2025-05-08 16:34:02,406 | INFO     | preparing for final server update for job 6637936533 in state='finished'
[2025-05-08 18:34:26] 2025-05-08 16:34:02,407 | INFO     | this job has now completed (state=finished)
[2025-05-08 18:34:26] 2025-05-08 16:34:02,407 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-08 18:34:26] 2025-05-08 16:34:02,407 | INFO     | log transfer has been attempted: DONE
[2025-05-08 18:34:26] 2025-05-08 16:34:02,407 | INFO     | job 6637936533 has finished - writing final server update
[2025-05-08 18:34:26] 2025-05-08 16:34:02,407 | INFO     | total number of processed events: 400 (read)
[2025-05-08 18:34:26] 2025-05-08 16:34:02,409 | INFO     | executing command: lscpu
[2025-05-08 18:34:26] 2025-05-08 16:34:02,432 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-08 18:34:26] 2025-05-08 16:34:02,879 | INFO     | monitor loop #394: job 0:6637936533 is in state 'finished'
[2025-05-08 18:34:26] 2025-05-08 16:34:02,879 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-08 18:34:26] 2025-05-08 16:34:04,265 | INFO     | PID=1482654 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-08 18:34:26] 2025-05-08 16:34:05,382 | INFO     | monitor loop #395: job 0:6637936533 is in state 'finished'
[2025-05-08 18:34:26] 2025-05-08 16:34:05,382 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-08 18:34:26] 2025-05-08 16:34:07,499 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-08 18:34:26] 2025-05-08 16:34:07,500 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6637936533/memory_monitor_summary.json (trf name=prmon)
[2025-05-08 18:34:26] 2025-05-08 16:34:07,500 | INFO     | extracted standard info from prmon json
[2025-05-08 18:34:26] 2025-05-08 16:34:07,500 | INFO     | extracted standard memory fields from prmon json
[2025-05-08 18:34:26] 2025-05-08 16:34:07,500 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-08 18:34:26] 2025-05-08 16:34:07,500 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-08 18:34:26] 2025-05-08 16:34:07,500 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-08 18:34:26] 2025-05-08 16:34:07,501 | INFO     | fitting pss+swap vs Time
[2025-05-08 18:34:26] 2025-05-08 16:34:07,501 | INFO     | sum of square deviations: 141539398.0
[2025-05-08 18:34:26] 2025-05-08 16:34:07,501 | INFO     | sum of deviations: 12560845073.0
[2025-05-08 18:34:26] 2025-05-08 16:34:07,501 | INFO     | mean x: 1746719559.0
[2025-05-08 18:34:26] 2025-05-08 16:34:07,501 | INFO     | mean y: 2336789.6363636362
[2025-05-08 18:34:26] 2025-05-08 16:34:07,501 | INFO     | -- intersect: -155009441390.86633
[2025-05-08 18:34:26] 2025-05-08 16:34:07,501 | INFO     | intersect: -155009441390.86633
[2025-05-08 18:34:26] 2025-05-08 16:34:07,501 | INFO     | chi2: 0.9865754871575598
[2025-05-08 18:34:26] 2025-05-08 16:34:07,501 | INFO     | -- intersect: -155009441390.86633
[2025-05-08 18:34:26] 2025-05-08 16:34:07,502 | INFO     | current memory leak: 88.74 B/s (using 77 data points, chi2=0.99)
[2025-05-08 18:34:26] 2025-05-08 16:34:07,502 | INFO     | ..............................
[2025-05-08 18:34:26] 2025-05-08 16:34:07,502 | INFO     | . Timing measurements:
[2025-05-08 18:34:26] 2025-05-08 16:34:07,502 | INFO     | . get job = 0 s
[2025-05-08 18:34:26] 2025-05-08 16:34:07,502 | INFO     | . initial setup = 1 s
[2025-05-08 18:34:26] 2025-05-08 16:34:07,502 | INFO     | . payload setup = 4 s
[2025-05-08 18:34:26] 2025-05-08 16:34:07,502 | INFO     | . stage-in = 0 s
[2025-05-08 18:34:26] 2025-05-08 16:34:07,502 | INFO     | . payload execution = 5103 s
[2025-05-08 18:34:26] 2025-05-08 16:34:07,502 | INFO     | . stage-out = 0 s
[2025-05-08 18:34:26] 2025-05-08 16:34:07,502 | INFO     | . log creation = 0 s
[2025-05-08 18:34:26] 2025-05-08 16:34:07,502 | INFO     | ..............................
[2025-05-08 18:34:26] 2025-05-08 16:34:08,012 | INFO     | 
[2025-05-08 18:34:26] 2025-05-08 16:34:08,012 | INFO     | job summary report
[2025-05-08 18:34:26] 2025-05-08 16:34:08,012 | INFO     | --------------------------------------------------
[2025-05-08 18:34:26] 2025-05-08 16:34:08,012 | INFO     | PanDA job id: 6637936533
[2025-05-08 18:34:26] 2025-05-08 16:34:08,012 | INFO     | task id: 44506063
[2025-05-08 18:34:26] 2025-05-08 16:34:08,012 | INFO     | errors: (none)
[2025-05-08 18:34:26] 2025-05-08 16:34:08,012 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-08 18:34:26] 2025-05-08 16:34:08,012 | INFO     | pilot state: finished 
[2025-05-08 18:34:26] 2025-05-08 16:34:08,012 | INFO     | transexitcode: 0
[2025-05-08 18:34:26] 2025-05-08 16:34:08,012 | INFO     | exeerrorcode: 0
[2025-05-08 18:34:26] 2025-05-08 16:34:08,012 | INFO     | exeerrordiag: 
[2025-05-08 18:34:26] 2025-05-08 16:34:08,012 | INFO     | exitcode: 0
[2025-05-08 18:34:26] 2025-05-08 16:34:08,012 | INFO     | exitmsg: OK
[2025-05-08 18:34:26] 2025-05-08 16:34:08,013 | INFO     | cpuconsumptiontime: 17797 s
[2025-05-08 18:34:26] 2025-05-08 16:34:08,013 | INFO     | nevents: 400
[2025-05-08 18:34:26] 2025-05-08 16:34:08,013 | INFO     | neventsw: 0
[2025-05-08 18:34:26] 2025-05-08 16:34:08,013 | INFO     | pid: 1489249
[2025-05-08 18:34:26] 2025-05-08 16:34:08,013 | INFO     | pgrp: 1489249
[2025-05-08 18:34:26] 2025-05-08 16:34:08,013 | INFO     | corecount: 4
[2025-05-08 18:34:26] 2025-05-08 16:34:08,013 | INFO     | event service: False
[2025-05-08 18:34:26] 2025-05-08 16:34:08,013 | INFO     | sizes: {0: 2393691, 4: 2393897, 11: 2393925, 5112: 2420297, 5113: 2429300, 5120: 2429414}
[2025-05-08 18:34:26] 2025-05-08 16:34:08,013 | INFO     | --------------------------------------------------
[2025-05-08 18:34:26] 2025-05-08 16:34:08,013 | INFO     | 
[2025-05-08 18:34:26] 2025-05-08 16:34:08,013 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,035 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-08 18:34:26] 2025-05-08 16:34:08,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,036 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-08 18:34:26] 2025-05-08 16:34:08,036 | INFO     | job 6637936533 has completed (purged errors)
[2025-05-08 18:34:26] 2025-05-08 16:34:08,036 | INFO     | overall cleanup function is called
[2025-05-08 18:34:26] 2025-05-08 16:34:09,042 | INFO     | --- collectZombieJob: --- 10, [1489249]
[2025-05-08 18:34:26] 2025-05-08 16:34:09,043 | INFO     | zombie collector waiting for pid 1489249
[2025-05-08 18:34:26] 2025-05-08 16:34:09,043 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-08 18:34:26] 2025-05-08 16:34:09,043 | INFO     | collected zombie processes
[2025-05-08 18:34:26] 2025-05-08 16:34:09,043 | INFO     | will attempt to kill all subprocesses of pid=1489249
[2025-05-08 18:34:26] 2025-05-08 16:34:09,089 | INFO     | process IDs to be killed: [1489249] (in reverse order)
[2025-05-08 18:34:26] 2025-05-08 16:34:09,124 | WARNING  | found no corresponding commands to process id(s)
[2025-05-08 18:34:26] 2025-05-08 16:34:09,124 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-08 18:34:26] 2025-05-08 16:34:09,126 | INFO     | did not find any defunct processes belonging to 1489249
[2025-05-08 18:34:26] 2025-05-08 16:34:09,127 | INFO     | did not find any defunct processes belonging to 1489249
[2025-05-08 18:34:26] 2025-05-08 16:34:09,127 | INFO     | ready for new job
[2025-05-08 18:34:26] 2025-05-08 16:34:09,127 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-08 18:34:26] 2025-05-08 16:34:09,128 | INFO     | **************************************
[2025-05-08 18:34:26] 2025-05-08 16:34:09,128 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-08 18:34:26] 2025-05-08 16:34:09,128 | INFO     | **************************************
[2025-05-08 18:34:26] 2025-05-08 16:34:09,128 | INFO     | 
[2025-05-08 18:34:26] 2025-05-08 16:34:09,129 | INFO     | architecture information:
[2025-05-08 18:34:26] 2025-05-08 16:34:09,129 | INFO     | executing command: cat /etc/os-release
[2025-05-08 18:34:26] 2025-05-08 16:34:09,143 | INFO     | cat /etc/os-release:
[2025-05-08 18:34:26] NAME="CentOS Linux"
[2025-05-08 18:34:26] VERSION="7 (Core)"
[2025-05-08 18:34:26] ID="centos"
[2025-05-08 18:34:26] ID_LIKE="rhel fedora"
[2025-05-08 18:34:26] VERSION_ID="7"
[2025-05-08 18:34:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-08 18:34:26] ANSI_COLOR="0;31"
[2025-05-08 18:34:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-08 18:34:26] HOME_URL="https://www.centos.org/"
[2025-05-08 18:34:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-08 18:34:26] 
[2025-05-08 18:34:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-08 18:34:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-08 18:34:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-08 18:34:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-08 18:34:26] 
[2025-05-08 18:34:26] 2025-05-08 16:34:09,143 | INFO     | **************************************
[2025-05-08 18:34:26] 2025-05-08 16:34:09,647 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-05-08 18:34:26] 2025-05-08 16:34:09,665 | INFO     | sufficient remaining disk space (318406393856 B)
[2025-05-08 18:34:26] 2025-05-08 16:34:09,665 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-08 18:34:26] 2025-05-08 16:34:09,665 | INFO     | current server update state: UPDATING_FINAL
[2025-05-08 18:34:26] 2025-05-08 16:34:09,666 | INFO     | update_server=False
[2025-05-08 18:34:26] 2025-05-08 16:34:09,666 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-08 18:34:26] 2025-05-08 16:34:09,666 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-08 18:34:26] 2025-05-08 16:34:09,666 | INFO     | aborting loop
[2025-05-08 18:34:26] 2025-05-08 16:34:10,284 | INFO     | found 0 job(s) in 20 queues
[2025-05-08 18:34:26] 2025-05-08 16:34:10,285 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-08 18:34:26] 2025-05-08 16:34:10,285 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-08 18:34:26] 2025-05-08 16:34:10,408 | INFO     | all data control threads have been joined
[2025-05-08 18:34:26] 2025-05-08 16:34:10,671 | INFO     | [job] job monitor thread has finished
[2025-05-08 18:34:26] 2025-05-08 16:34:10,672 | INFO     | [job] retrieve thread has finished
[2025-05-08 18:34:26] 2025-05-08 16:34:10,740 | INFO     | [payload] validate_pre thread has finished
[2025-05-08 18:34:26] 2025-05-08 16:34:10,944 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-08 18:34:26] 2025-05-08 16:34:10,979 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-08 18:34:26] 2025-05-08 16:34:10,989 | INFO     | all job control threads have been joined
[2025-05-08 18:34:26] 2025-05-08 16:34:11,038 | INFO     | all payload control threads have been joined
[2025-05-08 18:34:26] 2025-05-08 16:34:11,200 | INFO     | [payload] validate_post thread has finished
[2025-05-08 18:34:26] 2025-05-08 16:34:11,414 | INFO     | [data] control thread has finished
[2025-05-08 18:34:26] 2025-05-08 16:34:11,434 | INFO     | [data] copytool_in thread has finished
[2025-05-08 18:34:26] 2025-05-08 16:34:11,963 | INFO     | [payload] execute_payloads thread has finished
[2025-05-08 18:34:26] 2025-05-08 16:34:11,995 | INFO     | [job] control thread has finished
[2025-05-08 18:34:26] 2025-05-08 16:34:12,038 | INFO     | [job] validate thread has finished
[2025-05-08 18:34:26] 2025-05-08 16:34:12,043 | INFO     | [payload] control thread has finished
[2025-05-08 18:34:26] 2025-05-08 16:34:12,077 | INFO     | [job] create_data_payload thread has finished
[2025-05-08 18:34:26] 2025-05-08 16:34:12,089 | INFO     | [payload] failed_post thread has finished
[2025-05-08 18:34:26] 2025-05-08 16:34:12,556 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-08 18:34:26] 2025-05-08 16:34:12,951 | INFO     | [data] copytool_out thread has finished
[2025-05-08 18:34:26] 2025-05-08 16:34:13,562 | INFO     | [job] queue monitor thread has finished
[2025-05-08 18:34:26] 2025-05-08 16:34:14,986 | INFO     | [data] queue_monitor thread has finished
[2025-05-08 18:34:26] 2025-05-08 16:34:20,052 | INFO     | job.realtimelogging is not enabled
[2025-05-08 18:34:26] 2025-05-08 16:34:21,058 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-08 18:34:26] 2025-05-08 16:34:21,677 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139987470784320)>', '<ExcThread(monitor, started 139986372376320)>']
[2025-05-08 18:34:26] 2025-05-08 16:34:22,349 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-08 18:34:26] 2025-05-08 16:34:22,349 | INFO     | [monitor] control thread has ended
[2025-05-08 18:34:26] 2025-05-08 16:34:26,699 | INFO     | all workflow threads have been joined
[2025-05-08 18:34:26] 2025-05-08 16:34:26,699 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-08 18:34:26] 2025-05-08 16:34:26,699 | INFO     | traces error code: 0
[2025-05-08 18:34:26] 2025-05-08 16:34:26,699 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-08 18:34:26] 2025-05-08 16:34:26,781 [wrapper] ==== pilot stdout END ====
[2025-05-08 18:34:26] 2025-05-08 16:34:26,786 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-08 18:34:26] 2025-05-08 16:34:26,790 [wrapper] pilotpid: 1482654
[2025-05-08 18:34:26] 2025-05-08 16:34:26,794 [wrapper] Pilot exit status: 0
[2025-05-08 18:34:26] 2025-05-08 16:34:26,807 [wrapper] pandaids: 6637936533
[2025-05-08 18:34:26] 2025-05-08 16:34:26,830 [wrapper] cleanup supervisor_pilot 1501474 1482655
[2025-05-08 18:34:26] 2025-05-08 16:34:26,834 [wrapper] Test setup, not cleaning
[2025-05-08 18:34:26] 2025-05-08 16:34:26,838 [wrapper] apfmon messages muted
[2025-05-08 18:34:26] 2025-05-08 16:34:26,842 [wrapper] ==== wrapper stdout END ====
[2025-05-08 18:34:26] 2025-05-08 16:34:26,845 [wrapper] ==== wrapper stderr END ====
[2025-05-08 18:34:26]  *** Error codes and diagnostics ***
[2025-05-08 18:34:26]     "exeErrorCode": 0,
[2025-05-08 18:34:26]     "exeErrorDiag": "",
[2025-05-08 18:34:26]     "pilotErrorCode": 0,
[2025-05-08 18:34:26]     "pilotErrorDiag": "",
[2025-05-08 18:34:26]  *** Listing of results directory ***
[2025-05-08 18:34:26] total 421348
[2025-05-08 18:34:26] -rw-r--r-- 1 boinc boinc    495897 May  8 05:25 pilot3.tar.gz
[2025-05-08 18:34:26] -rwx------ 1 boinc boinc     37140 May  8 05:26 runpilot2-wrapper.sh
[2025-05-08 18:34:26] -rw-r--r-- 1 boinc boinc      5111 May  8 05:26 queuedata.json
[2025-05-08 18:34:26] -rw-r--r-- 1 boinc boinc       100 May  8 17:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-08 18:34:26] -rwxr-xr-x 1 boinc boinc      7986 May  8 17:08 run_atlas
[2025-05-08 18:34:26] -rw-r--r-- 1 boinc boinc       105 May  8 17:08 job.xml
[2025-05-08 18:34:26] -rw-r--r-- 2 boinc boinc 225421339 May  8 17:08 EVNT.44506061._002008.pool.root.1
[2025-05-08 18:34:26] -rw-r--r-- 1 boinc boinc      6862 May  8 17:08 init_data.xml
[2025-05-08 18:34:26] drwxrwx--x 2 boinc boinc      4096 May  8 17:08 shared
[2025-05-08 18:34:26] -rw-r--r-- 2 boinc boinc    508875 May  8 17:08 input.tar.gz
[2025-05-08 18:34:26] -rw-r--r-- 2 boinc boinc     17569 May  8 17:08 start_atlas.sh
[2025-05-08 18:34:26] -rw-r--r-- 1 boinc boinc         0 May  8 17:08 boinc_lockfile
[2025-05-08 18:34:26] -rw-r--r-- 1 boinc boinc      2557 May  8 17:08 pandaJob.out
[2025-05-08 18:34:26] -rw------- 1 boinc boinc       424 May  8 17:08 setup.sh.local
[2025-05-08 18:34:26] -rw------- 1 boinc boinc    997885 May  8 17:08 agis_schedconf.cvmfs.json
[2025-05-08 18:34:26] -rw------- 1 boinc boinc   1596741 May  8 17:08 agis_ddmendpoints.agis.ALL.json
[2025-05-08 18:34:26] drwx------ 4 boinc boinc      4096 May  8 17:08 pilot3
[2025-05-08 18:34:26] -rw------- 1 boinc boinc 200717761 May  8 18:33 HITS.44506063._047846.pool.root.1
[2025-05-08 18:34:26] -rw-r--r-- 1 boinc boinc       529 May  8 18:33 boinc_task_state.xml
[2025-05-08 18:34:26] -rw------- 1 boinc boinc      1035 May  8 18:33 memory_monitor_summary.json
[2025-05-08 18:34:26] -rw------- 1 boinc boinc        95 May  8 18:34 pilot_heartbeat.json
[2025-05-08 18:34:26] -rw------- 1 boinc boinc    238366 May  8 18:34 log.44506063._047846.job.log.tgz.1
[2025-05-08 18:34:26] -rw-r--r-- 1 boinc boinc      8192 May  8 18:34 boinc_mmap_file
[2025-05-08 18:34:26] -rw-r--r-- 1 boinc boinc        27 May  8 18:34 wrapper_checkpoint.txt
[2025-05-08 18:34:26] -rw------- 1 boinc boinc      7665 May  8 18:34 heartbeat.json
[2025-05-08 18:34:26] -rw------- 1 boinc boinc      4429 May  8 18:34 pilotlog.txt
[2025-05-08 18:34:26] -rw------- 1 boinc boinc    496370 May  8 18:34 log.44506063._047846.job.log.1
[2025-05-08 18:34:26] -rw------- 1 boinc boinc       357 May  8 18:34 output.list
[2025-05-08 18:34:26] -rw-r--r-- 1 boinc boinc       620 May  8 18:34 runtime_log
[2025-05-08 18:34:26] -rw------- 1 boinc boinc    757760 May  8 18:34 result.tar.gz
[2025-05-08 18:34:26] -rw-r--r-- 1 boinc boinc     11109 May  8 18:34 runtime_log.err
[2025-05-08 18:34:26] -rw------- 1 boinc boinc       660 May  8 18:34 Mt2KDmE56W7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmrFJLDmlVGfem.diag
[2025-05-08 18:34:26] -rw-r--r-- 1 boinc boinc     21374 May  8 18:34 stderr.txt
[2025-05-08 18:34:26] HITS file was successfully produced:
[2025-05-08 18:34:26] -rw------- 1 boinc boinc 200717761 May  8 18:33 shared/HITS.pool.root.1
[2025-05-08 18:34:26]  *** Contents of shared directory: ***
[2025-05-08 18:34:26] total 417420
[2025-05-08 18:34:26] -rw-r--r-- 2 boinc boinc 225421339 May  8 17:08 ATLAS.root_0
[2025-05-08 18:34:26] -rw-r--r-- 2 boinc boinc    508875 May  8 17:08 input.tar.gz
[2025-05-08 18:34:26] -rw-r--r-- 2 boinc boinc     17569 May  8 17:08 start_atlas.sh
[2025-05-08 18:34:26] -rw------- 1 boinc boinc 200717761 May  8 18:33 HITS.pool.root.1
[2025-05-08 18:34:26] -rw------- 1 boinc boinc    757760 May  8 18:34 result.tar.gz
18:34:28 (1478932): run_atlas exited; CPU time 17813.669380
18:34:28 (1478932): called boinc_finish(0)

</stderr_txt>
]]>

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