Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-08 07:06:26 (1324): Detected: vboxwrapper 26206
2025-05-08 07:06:26 (1324): Detected: BOINC client v8.0.2
2025-05-08 07:06:26 (1324): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-05-08 07:06:27 (1324): Successfully copied 'init_data.xml' to the shared directory.
2025-05-08 07:06:27 (1324): Create VM. (boinc_97d21954d2cfb511, slot#2)
2025-05-08 07:06:28 (1324): Setting Memory Size for VM. (4300MB)
2025-05-08 07:06:28 (1324): Setting CPU Count for VM. (3)
2025-05-08 07:06:28 (1324): Setting Chipset Options for VM.
2025-05-08 07:06:29 (1324): Setting Graphics Controller Options for VM.
2025-05-08 07:06:29 (1324): Setting Boot Options for VM.
2025-05-08 07:06:29 (1324): Setting Network Configuration for NAT.
2025-05-08 07:06:29 (1324): Enabling VM Network Access.
2025-05-08 07:06:30 (1324): Disabling USB Support for VM.
2025-05-08 07:06:30 (1324): Disabling COM Port Support for VM.
2025-05-08 07:06:30 (1324): Disabling LPT Port Support for VM.
2025-05-08 07:06:30 (1324): Disabling Audio Support for VM.
2025-05-08 07:06:31 (1324): Disabling Clipboard Support for VM.
2025-05-08 07:06:31 (1324): Disabling Drag and Drop Support for VM.
2025-05-08 07:06:31 (1324): Adding storage controller(s) to VM.
2025-05-08 07:06:31 (1324): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-08 07:06:32 (1324): Adding VirtualBox Guest Additions to VM.
2025-05-08 07:06:32 (1324): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-08 07:06:32 (1324): forwarding host port 63321 to guest port 80
2025-05-08 07:06:33 (1324): Enabling remote desktop for VM.
2025-05-08 07:06:33 (1324): Required extension pack not installed, remote desktop not enabled.
2025-05-08 07:06:33 (1324): Enabling shared directory for VM.
2025-05-08 07:06:33 (1324): Starting VM using VBoxManage interface. (boinc_97d21954d2cfb511, slot#2)
2025-05-08 07:06:42 (1324): Successfully started VM. (PID = '4124')
2025-05-08 07:06:42 (1324): Reporting VM Process ID to BOINC.
2025-05-08 07:06:42 (1324): Guest Log: BIOS: VirtualBox 7.0.6
2025-05-08 07:06:42 (1324): Guest Log: CPUID EDX: 0x178bfbff
2025-05-08 07:06:42 (1324): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-08 07:06:42 (1324): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-08 07:06:42 (1324): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-08 07:06:42 (1324): Detected: Web Application Enabled (http://localhost:63321)
2025-05-08 07:06:42 (1324): Preference change detected
2025-05-08 07:06:42 (1324): Setting CPU throttle for VM. (50%)
2025-05-08 07:06:43 (1324): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-08 07:06:44 (1324): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-08 07:06:44 (1324): Guest Log: BIOS: Booting from Hard Disk...
2025-05-08 07:06:48 (1324): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-08 07:06:48 (1324): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-08 07:06:48 (1324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-08 07:06:57 (1324): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-08 07:06:57 (1324): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-08 07:07:09 (1324): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-08 07:07:09 (1324): Guest Log: 00:00:00.000197 main     Log opened 2025-05-08T07:07:07.670389000Z
2025-05-08 07:07:09 (1324): Guest Log: 00:00:00.000413 main     OS Product: Linux
2025-05-08 07:07:09 (1324): Guest Log: 00:00:00.000467 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-08 07:07:09 (1324): Guest Log: 00:00:00.000510 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-08 07:07:09 (1324): Guest Log: 00:00:00.000554 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-08 07:07:09 (1324): Guest Log: 00:00:00.000555 main     Process ID: 1265
2025-05-08 07:07:09 (1324): Guest Log: 00:00:00.000556 main     Package type: LINUX_64BITS_GENERIC
2025-05-08 07:07:09 (1324): Guest Log: 00:00:00.002427 main     5.2.32 r132073 started. Verbose level = 0
2025-05-08 07:07:11 (1324): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-08 07:07:11 (1324): Guest Log: [INFO] Mounting shared directory
2025-05-08 07:07:12 (1324): Guest Log: [INFO] Checking for init_data.xml
2025-05-08 07:07:18 (1324): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-08 07:07:18 (1324): Guest Log: [INFO] Detected branch: prod
2025-05-08 07:07:19 (1324): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-08 07:07:19 (1324): Guest Log: Copying input files
2025-05-08 07:07:19 (1324): Guest Log: 00:00:10.009192 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 772 014 000ns (GuestNow=1 746 680 839 903 152 000 ns GuestLast=1 746 688 027 675 166 000 ns fSetTimeLastLoop=true )
2025-05-08 07:07:22 (1324): Guest Log: Copied input files into RunAtlas.
2025-05-08 07:07:22 (1324): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-08 07:07:22 (1324): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-08 07:07:22 (1324): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-08 07:07:22 (1324): Guest Log: Further information can be found at the LHC@home message board.
2025-05-08 07:07:33 (1324): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-08 07:07:34 (1324): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-08 07:07:34 (1324): Guest Log: 2.6.3.0 1542 0 31948 145737 4 1 3117346 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-08 07:07:39 (1324): Guest Log: copied the webapp to /var/www
2025-05-08 07:07:39 (1324): Guest Log: ATHENA_PROC_NUMBER=3
2025-05-08 07:07:39 (1324): Guest Log: ATHENA_CORE_NUMBER=3
2025-05-08 07:07:41 (1324): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-08 07:07:41 (1324): Guest Log:  *** Starting ATLAS job. (PandaID=6637933348 taskID=44506063) ***
2025-05-08 07:12:31 (1324): VM state change detected. (old = 'running', new = 'paused')
2025-05-08 07:12:51 (1324): VM state change detected. (old = 'paused', new = 'running')
2025-05-08 07:23:36 (1324): Guest Log:  *** Job finished ***
2025-05-08 07:23:36 (1324): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:07,223 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:08,230 | INFO     | [job] queue monitor thread has finished
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:08,692 | INFO     | [data] queue_monitor thread has finished
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:09,338 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140466781411136)>', '<ExcThread(monitor, started 140465764562688)>']
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:09,386 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:09,388 | INFO     | [monitor] control thread has ended
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:14,347 | INFO     | all workflow threads have been joined
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:14,347 | INFO     | end of generic workflow (traces error code: 0)
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:14,347 | INFO     | traces error code: 0
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:14,347 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:14,619 [wrapper] ==== pilot stdout END ====
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:14,630 [wrapper] ==== wrapper stdout RESUME ====
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:14,640 [wrapper] pilotpid: 5869
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:14,651 [wrapper] Pilot exit status: 0
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:15,049 [wrapper] pandaids: 6637933348
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:15,110 [wrapper] cleanup supervisor_pilot  5875 5870
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:15,121 [wrapper] Test setup, not cleaning
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:15,133 [wrapper] apfmon messages muted
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:15,144 [wrapper] ==== wrapper stdout END ====
2025-05-08 07:23:36 (1324): Guest Log: 2025-05-08 05:23:15,156 [wrapper] ==== wrapper stderr END ====
2025-05-08 07:23:36 (1324): Guest Log:  *** Error codes and diagnostics ***
2025-05-08 07:23:36 (1324): Guest Log:     "exeErrorCode": 65,
2025-05-08 07:23:36 (1324): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132); Possible memory leak: 'pss' slope: 5047.27 KB/s",
2025-05-08 07:23:36 (1324): Guest Log:     "pilotErrorCode": 1305,
2025-05-08 07:23:36 (1324): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132); Possible memory leak: 'pss' slope: 5047.27 KB/s",
2025-05-08 07:23:36 (1324): Guest Log:  *** Listing of results directory ***
2025-05-08 07:23:36 (1324): Guest Log: total 4252
2025-05-08 07:23:36 (1324): Guest Log: -rw-r--r--. 1 atlas atlas  495897 May  8 01:39 pilot3.tar.gz
2025-05-08 07:23:36 (1324): Guest Log: -rw-r--r--. 1 atlas atlas    5111 May  8 01:43 queuedata.json
2025-05-08 07:23:36 (1324): Guest Log: -rwx------. 1 atlas atlas   37140 May  8 01:44 runpilot2-wrapper.sh
2025-05-08 07:23:36 (1324): Guest Log: -rwxr-xr-x. 1 atlas atlas    8841 May  8 05:07 init_data.xml
2025-05-08 07:23:36 (1324): Guest Log: -rwxr-xr-x. 1 atlas atlas  508878 May  8 05:07 input.tar.gz
2025-05-08 07:23:36 (1324): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 May  8 05:07 start_atlas.sh
2025-05-08 07:23:36 (1324): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 May  8 05:07 EVNT.44506061._001864.pool.root.1 -> /data/./ATLAS.root_0
2025-05-08 07:23:36 (1324): Guest Log: -rw-r--r--. 1 atlas atlas    2557 May  8 05:07 pandaJob.out
2025-05-08 07:23:36 (1324): Guest Log: -rw-------. 1 atlas atlas     424 May  8 05:08 setup.sh.local
2025-05-08 07:23:36 (1324): Guest Log: -rw-------. 1 atlas atlas  996836 May  8 05:10 agis_schedconf.cvmfs.json
2025-05-08 07:23:36 (1324): Guest Log: -rw-------. 1 atlas atlas 1596741 May  8 05:10 agis_ddmendpoints.agis.ALL.json
2025-05-08 07:23:36 (1324): Guest Log: drwx------. 4 atlas atlas    4096 May  8 05:11 pilot3
2025-05-08 07:23:36 (1324): Guest Log: -rw-------. 1 atlas atlas   53686 May  8 05:20 log.44506063._046692.job.log.tgz.1
2025-05-08 07:23:36 (1324): Guest Log: -rw-------. 1 atlas atlas      95 May  8 05:22 pilot_heartbeat.json
2025-05-08 07:23:36 (1324): Guest Log: -rw-------. 1 atlas atlas    8265 May  8 05:23 heartbeat.json
2025-05-08 07:23:36 (1324): Guest Log: -rw-------. 1 atlas atlas    4536 May  8 05:23 pilotlog.txt
2025-05-08 07:23:36 (1324): Guest Log: -rw-------. 1 atlas atlas  235219 May  8 05:23 log.44506063._046692.job.log.1
2025-05-08 07:23:36 (1324): Guest Log: -rw-------. 1 atlas atlas     188 May  8 05:23 output.list
2025-05-08 07:23:36 (1324): Guest Log: -rw-r--r--. 1 atlas atlas     620 May  8 05:23 runtime_log
2025-05-08 07:23:36 (1324): Guest Log: -rw-------. 1 atlas atlas  307200 May  8 05:23 result.tar.gz
2025-05-08 07:23:36 (1324): Guest Log: -rw-r--r--. 1 atlas atlas   10779 May  8 05:23 runtime_log.err
2025-05-08 07:23:36 (1324): Guest Log: -rw-------. 1 atlas atlas     641 May  8 05:23 2sTLDmsU5W7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmG37LDmpHDAun.diag
2025-05-08 07:23:36 (1324): Guest Log: Looking for outputfile HITS.44506063._046692.pool.root.1
2025-05-08 07:23:36 (1324): Guest Log: No HITS file was produced
2025-05-08 07:23:36 (1324): Guest Log: Successfully finished the ATLAS job!
2025-05-08 07:23:36 (1324): Guest Log: Copying the results back to the shared directory!
2025-05-08 07:23:36 (1324): Guest Log:  *** Contents of shared directory: ***
2025-05-08 07:23:37 (1324): Guest Log: total 216580
2025-05-08 07:23:37 (1324): Guest Log: -rwxrwxrwx. 1 root root 220922226 May  8 05:06 ATLAS.root_0
2025-05-08 07:23:37 (1324): Guest Log: -rwxrwxrwx. 1 root root      8841 May  8 05:06 init_data.xml
2025-05-08 07:23:37 (1324): Guest Log: -rwxrwxrwx. 1 root root    508878 May  8 04:24 input.tar.gz
2025-05-08 07:23:37 (1324): Guest Log: -rwxrwxrwx. 1 root root    307200 May  8  2025 result.tar.gz
2025-05-08 07:23:37 (1324): Guest Log: -rwxrwxrwx. 1 root root     17569 May  8 04:24 start_atlas.sh
2025-05-08 07:23:37 (1324): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-08 07:23:37 (1324): VM Completion File Detected.
2025-05-08 07:23:37 (1324): Powering off VM.
2025-05-08 07:23:38 (1324): Successfully stopped VM.
2025-05-08 07:23:38 (1324): Deregistering VM. (boinc_97d21954d2cfb511, slot#2)
2025-05-08 07:23:38 (1324): Removing network bandwidth throttle group from VM.
2025-05-08 07:23:38 (1324): Removing VM from VirtualBox.
07:23:43 (1324): called boinc_finish(0)

</stderr_txt>
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