Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-08 04:56:17 (77564): Detected: vboxwrapper 26206
2025-05-08 04:56:17 (77564): Detected: BOINC client v8.0.2
2025-05-08 04:56:18 (77564): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-05-08 04:56:18 (77564): Successfully copied 'init_data.xml' to the shared directory.
2025-05-08 04:56:19 (77564): Create VM. (boinc_93adf29042772c84, slot#4)
2025-05-08 04:56:19 (77564): Setting Memory Size for VM. (4800MB)
2025-05-08 04:56:20 (77564): Setting CPU Count for VM. (8)
2025-05-08 04:56:20 (77564): Setting Chipset Options for VM.
2025-05-08 04:56:20 (77564): Setting Graphics Controller Options for VM.
2025-05-08 04:56:20 (77564): Setting Boot Options for VM.
2025-05-08 04:56:21 (77564): Setting Network Configuration for NAT.
2025-05-08 04:56:21 (77564): Enabling VM Network Access.
2025-05-08 04:56:21 (77564): Disabling USB Support for VM.
2025-05-08 04:56:22 (77564): Disabling COM Port Support for VM.
2025-05-08 04:56:22 (77564): Disabling LPT Port Support for VM.
2025-05-08 04:56:22 (77564): Disabling Audio Support for VM.
2025-05-08 04:56:22 (77564): Disabling Clipboard Support for VM.
2025-05-08 04:56:23 (77564): Disabling Drag and Drop Support for VM.
2025-05-08 04:56:23 (77564): Adding storage controller(s) to VM.
2025-05-08 04:56:23 (77564): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-08 04:56:26 (77564): Adding VirtualBox Guest Additions to VM.
2025-05-08 04:56:26 (77564): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-08 04:56:27 (77564): forwarding host port 57508 to guest port 80
2025-05-08 04:56:27 (77564): Enabling remote desktop for VM.
2025-05-08 04:56:27 (77564): Required extension pack not installed, remote desktop not enabled.
2025-05-08 04:56:27 (77564): Enabling shared directory for VM.
2025-05-08 04:56:28 (77564): Starting VM using VBoxManage interface. (boinc_93adf29042772c84, slot#4)
2025-05-08 04:56:33 (77564): Successfully started VM. (PID = '73908')
2025-05-08 04:56:33 (77564): Reporting VM Process ID to BOINC.
2025-05-08 04:56:33 (77564): Guest Log: BIOS: VirtualBox 7.1.6
2025-05-08 04:56:33 (77564): Guest Log: CPUID EDX: 0x178bfbff
2025-05-08 04:56:33 (77564): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-08 04:56:33 (77564): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-08 04:56:33 (77564): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-08 04:56:33 (77564): Detected: Web Application Enabled (http://localhost:57508)
2025-05-08 04:56:33 (77564): Preference change detected
2025-05-08 04:56:33 (77564): Setting CPU throttle for VM. (90%)
2025-05-08 04:56:33 (77564): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-08 04:56:35 (77564): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-08 04:56:35 (77564): Guest Log: BIOS: Booting from Hard Disk...
2025-05-08 04:56:38 (77564): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-08 04:56:38 (77564): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-08 04:56:38 (77564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-08 04:56:47 (77564): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-08 04:56:47 (77564): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-08 04:56:54 (77564): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-08 04:56:54 (77564): Guest Log: 00:00:00.000227 main     Log opened 2025-05-08T04:56:52.515288000Z
2025-05-08 04:56:54 (77564): Guest Log: 00:00:00.000361 main     OS Product: Linux
2025-05-08 04:56:54 (77564): Guest Log: 00:00:00.000407 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-08 04:56:54 (77564): Guest Log: 00:00:00.000442 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-08 04:56:54 (77564): Guest Log: 00:00:00.000475 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-08 04:56:54 (77564): Guest Log: 00:00:00.000476 main     Process ID: 1377
2025-05-08 04:56:54 (77564): Guest Log: 00:00:00.000477 main     Package type: LINUX_64BITS_GENERIC
2025-05-08 04:56:54 (77564): Guest Log: 00:00:00.001780 main     5.2.32 r132073 started. Verbose level = 0
2025-05-08 04:56:54 (77564): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-08 04:56:54 (77564): Guest Log: [INFO] Mounting shared directory
2025-05-08 04:56:54 (77564): Guest Log: [INFO] Checking for init_data.xml
2025-05-08 04:57:00 (77564): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-08 04:57:00 (77564): Guest Log: [INFO] Detected branch: prod
2025-05-08 04:57:00 (77564): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-08 04:57:00 (77564): Guest Log: Copying input files
2025-05-08 04:57:03 (77564): Guest Log: Copied input files into RunAtlas.
2025-05-08 04:57:03 (77564): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-08 04:57:03 (77564): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-08 04:57:03 (77564): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-08 04:57:03 (77564): Guest Log: Further information can be found at the LHC@home message board.
2025-05-08 04:57:04 (77564): Guest Log: 00:00:10.003828 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 154 539 000ns (GuestNow=1 746 673 024 363 646 000 ns GuestLast=1 746 680 212 518 185 000 ns fSetTimeLastLoop=true )
2025-05-08 04:57:13 (77564): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-08 04:57:14 (77564): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-08 04:57:14 (77564): Guest Log: 2.6.3.0 1654 0 32040 145733 4 1 3117346 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-08 04:57:15 (77564): Guest Log: copied the webapp to /var/www
2025-05-08 04:57:15 (77564): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-08 04:57:15 (77564): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-08 04:57:15 (77564): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-08 04:57:15 (77564): Guest Log:  *** Starting ATLAS job. (PandaID=6636682218 taskID=44506063) ***
2025-05-08 05:01:58 (77564): VM state change detected. (old = 'running', new = 'paused')
2025-05-08 05:02:18 (77564): VM state change detected. (old = 'paused', new = 'running')
2025-05-08 05:18:31 (77564): VM state change detected. (old = 'running', new = 'paused')
2025-05-08 05:18:51 (77564): VM state change detected. (old = 'paused', new = 'running')
2025-05-08 05:22:13 (77564): VM state change detected. (old = 'running', new = 'paused')
2025-05-08 05:22:33 (77564): VM state change detected. (old = 'paused', new = 'running')
2025-05-08 05:23:53 (77564): VM state change detected. (old = 'running', new = 'paused')
2025-05-08 05:24:13 (77564): VM state change detected. (old = 'paused', new = 'running')
2025-05-08 05:33:05 (77564): VM state change detected. (old = 'running', new = 'paused')
2025-05-08 05:33:25 (77564): VM state change detected. (old = 'paused', new = 'running')
2025-05-08 05:39:46 (77564): VM state change detected. (old = 'running', new = 'paused')
2025-05-08 05:40:06 (77564): VM state change detected. (old = 'paused', new = 'running')
2025-05-08 05:46:08 (77564): VM state change detected. (old = 'running', new = 'paused')
2025-05-08 05:46:28 (77564): VM state change detected. (old = 'paused', new = 'running')
2025-05-08 05:55:22 (77564): VM state change detected. (old = 'running', new = 'paused')
2025-05-08 05:55:42 (77564): VM state change detected. (old = 'paused', new = 'running')
2025-05-08 06:12:09 (77564): VM state change detected. (old = 'running', new = 'paused')
2025-05-08 06:12:29 (77564): VM state change detected. (old = 'paused', new = 'running')
2025-05-08 06:22:20 (77564): VM state change detected. (old = 'running', new = 'paused')
2025-05-08 06:22:40 (77564): VM state change detected. (old = 'paused', new = 'running')
2025-05-08 06:28:41 (77564): VM state change detected. (old = 'running', new = 'paused')
2025-05-08 06:29:01 (77564): VM state change detected. (old = 'paused', new = 'running')
2025-05-08 06:40:31 (77564): Status Report: Elapsed Time: '6000.000000'
2025-05-08 06:40:31 (77564): Status Report: CPU Time: '34816.187500'
2025-05-08 07:16:48 (77564): Guest Log:  *** Job finished ***
2025-05-08 07:16:48 (77564): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:12:59,771 | INFO     | [data] queue_monitor thread has finished
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:05,055 | INFO     | job.realtimelogging is not enabled
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:06,059 | INFO     | [payload] run_realtimelog thread has finished
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:08,046 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140219816453952)>', '<ExcThread(monitor, started 140218845873920)>']
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:08,131 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:08,131 | INFO     | [monitor] control thread has ended
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:13,051 | INFO     | all workflow threads have been joined
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:13,051 | INFO     | end of generic workflow (traces error code: 0)
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:13,052 | INFO     | traces error code: 0
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:13,052 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:13,141 [wrapper] ==== pilot stdout END ====
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:13,149 [wrapper] ==== wrapper stdout RESUME ====
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:13,155 [wrapper] pilotpid: 6029
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:13,160 [wrapper] Pilot exit status: 0
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:13,318 [wrapper] pandaids: 6636682218
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:13,365 [wrapper] cleanup supervisor_pilot  3770 6030
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:13,375 [wrapper] Test setup, not cleaning
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:13,384 [wrapper] apfmon messages muted
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:13,390 [wrapper] ==== wrapper stdout END ====
2025-05-08 07:16:48 (77564): Guest Log: 2025-05-08 05:13:13,396 [wrapper] ==== wrapper stderr END ====
2025-05-08 07:16:48 (77564): Guest Log:  *** Error codes and diagnostics ***
2025-05-08 07:16:48 (77564): Guest Log:     "exeErrorCode": 0,
2025-05-08 07:16:48 (77564): Guest Log:     "exeErrorDiag": "",
2025-05-08 07:16:48 (77564): Guest Log:     "pilotErrorCode": 0,
2025-05-08 07:16:48 (77564): Guest Log:     "pilotErrorDiag": "",
2025-05-08 07:16:48 (77564): Guest Log:  *** Listing of results directory ***
2025-05-08 07:16:48 (77564): Guest Log: total 194008
2025-05-08 07:16:48 (77564): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May  7 05:30 pilot3.tar.gz
2025-05-08 07:16:48 (77564): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May  7 05:32 queuedata.json
2025-05-08 07:16:48 (77564): Guest Log: -rwx------. 1 atlas atlas     37140 May  7 05:33 runpilot2-wrapper.sh
2025-05-08 07:16:48 (77564): Guest Log: -rwxr-xr-x. 1 atlas atlas     12243 May  8 02:57 init_data.xml
2025-05-08 07:16:48 (77564): Guest Log: -rwxr-xr-x. 1 atlas atlas    508881 May  8 02:57 input.tar.gz
2025-05-08 07:16:48 (77564): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May  8 02:57 start_atlas.sh
2025-05-08 07:16:48 (77564): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May  8 02:57 EVNT.44506061._001341.pool.root.1 -> /data/./ATLAS.root_0
2025-05-08 07:16:48 (77564): Guest Log: -rw-r--r--. 1 atlas atlas      2558 May  8 02:57 pandaJob.out
2025-05-08 07:16:48 (77564): Guest Log: -rw-------. 1 atlas atlas       424 May  8 02:57 setup.sh.local
2025-05-08 07:16:48 (77564): Guest Log: -rw-------. 1 atlas atlas    996852 May  8 02:58 agis_schedconf.cvmfs.json
2025-05-08 07:16:48 (77564): Guest Log: -rw-------. 1 atlas atlas   1596741 May  8 02:58 agis_ddmendpoints.agis.ALL.json
2025-05-08 07:16:48 (77564): Guest Log: drwx------. 4 atlas atlas      4096 May  8 02:58 pilot3
2025-05-08 07:16:48 (77564): Guest Log: -rw-------. 1 atlas atlas 192894476 May  8 05:11 HITS.44506063._034225.pool.root.1
2025-05-08 07:16:48 (77564): Guest Log: -rw-------. 1 atlas atlas        95 May  8 05:12 pilot_heartbeat.json
2025-05-08 07:16:48 (77564): Guest Log: -rw-------. 1 atlas atlas      1028 May  8 05:12 memory_monitor_summary.json
2025-05-08 07:16:48 (77564): Guest Log: -rw-------. 1 atlas atlas    323994 May  8 05:12 log.44506063._034225.job.log.tgz.1
2025-05-08 07:16:48 (77564): Guest Log: -rw-------. 1 atlas atlas      7682 May  8 05:12 heartbeat.json
2025-05-08 07:16:48 (77564): Guest Log: -rw-------. 1 atlas atlas      4485 May  8 05:13 pilotlog.txt
2025-05-08 07:16:48 (77564): Guest Log: -rw-------. 1 atlas atlas    670517 May  8 05:13 log.44506063._034225.job.log.1
2025-05-08 07:16:48 (77564): Guest Log: -rw-------. 1 atlas atlas       357 May  8 05:13 output.list
2025-05-08 07:16:48 (77564): Guest Log: -rw-r--r--. 1 atlas atlas       620 May  8 05:13 runtime_log
2025-05-08 07:16:48 (77564): Guest Log: -rw-------. 1 atlas atlas   1013760 May  8 05:13 result.tar.gz
2025-05-08 07:16:48 (77564): Guest Log: -rw-r--r--. 1 atlas atlas     10958 May  8 05:13 runtime_log.err
2025-05-08 07:16:48 (77564): Guest Log: -rw-------. 1 atlas atlas       663 May  8 05:13 0dCLDmzamW7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmA05LDmwO9s6m.diag
2025-05-08 07:16:48 (77564): Guest Log: Looking for outputfile HITS.44506063._034225.pool.root.1
2025-05-08 07:16:48 (77564): Guest Log: HITS file was successfully produced
2025-05-08 07:16:48 (77564): Guest Log: -rw-------. 1 atlas atlas 192894476 May  8 05:11 /home/atlas/RunAtlas/HITS.44506063._034225.pool.root.1
2025-05-08 07:16:49 (77564): Guest Log: Successfully finished the ATLAS job!
2025-05-08 07:16:49 (77564): Guest Log: Copying the results back to the shared directory!
2025-05-08 07:16:49 (77564): Guest Log:  *** Contents of shared directory: ***
2025-05-08 07:16:49 (77564): Guest Log: total 411192
2025-05-08 07:16:49 (77564): Guest Log: -rwxrwxrwx. 1 root root 226602474 May  8 02:56 ATLAS.root_0
2025-05-08 07:16:49 (77564): Guest Log: -rwxrwxrwx. 1 root root 192894476 May  8  2025 HITS.pool.root.1
2025-05-08 07:16:49 (77564): Guest Log: -rwxrwxrwx. 1 root root     12243 May  8 02:56 init_data.xml
2025-05-08 07:16:49 (77564): Guest Log: -rwxrwxrwx. 1 root root    508881 May  8 02:56 input.tar.gz
2025-05-08 07:16:49 (77564): Guest Log: -rwxrwxrwx. 1 root root   1013760 May  8  2025 result.tar.gz
2025-05-08 07:16:49 (77564): Guest Log: -rwxrwxrwx. 1 root root     17569 May  8 02:56 start_atlas.sh
2025-05-08 07:16:49 (77564): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-08 07:16:49 (77564): VM Completion File Detected.
2025-05-08 07:16:49 (77564): Powering off VM.
2025-05-08 07:16:50 (77564): Successfully stopped VM.
2025-05-08 07:16:50 (77564): Deregistering VM. (boinc_93adf29042772c84, slot#4)
2025-05-08 07:16:51 (77564): Removing network bandwidth throttle group from VM.
2025-05-08 07:16:51 (77564): Removing VM from VirtualBox.
07:16:56 (77564): called boinc_finish(0)

</stderr_txt>
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