Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:50:06 (41188): wrapper (7.7.26015): starting
18:50:06 (41188): wrapper: running run_atlas (--nthreads 10)
[2025-05-07 18:50:06] Arguments: --nthreads 10
[2025-05-07 18:50:06] Threads: 10
[2025-05-07 18:50:06] Checking for CVMFS
[2025-05-07 18:50:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-07 18:50:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-07 18:50:07] Running cvmfs_config stat atlas.cern.ch
[2025-05-07 18:50:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-07 18:50:07] 2.11.2.0 9271 68928 380952 145728 3 437 15860466 18432000 22474 130560 0 229432856 98.995 550864108 35492 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-05-07 18:50:07] CVMFS is ok
[2025-05-07 18:50:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-07 18:50:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-07 18:50:08] Further information can be found at the LHC@home message board.
[2025-05-07 18:50:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-07 18:50:08] Checking for apptainer binary...
[2025-05-07 18:50:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-07 18:50:08] Running /usr/bin/apptainer --version
[2025-05-07 18:50:08] apptainer version 1.3.2-1.el7
[2025-05-07 18:50:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-07 18:50:08] c-211-18.aglt2.org
[2025-05-07 18:50:08] apptainer works
[2025-05-07 18:50:08] Set ATHENA_PROC_NUMBER=10
[2025-05-07 18:50:08] Set ATHENA_CORE_NUMBER=10
[2025-05-07 18:50:09] Starting ATLAS job with PandaID=6637467651
[2025-05-07 18:50:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:00:04 (41188): BOINC client no longer exists - exiting
21:00:04 (41188): timer handler: client dead, exiting
21:10:01 (26953): wrapper (7.7.26015): starting
21:10:01 (26953): wrapper: running run_atlas (--nthreads 10)
[2025-05-07 21:10:01] Arguments: --nthreads 10
[2025-05-07 21:10:01] Threads: 10
[2025-05-07 21:10:01] This job has been restarted, cleaning up previous attempt
[2025-05-07 21:10:01] Checking for CVMFS
[2025-05-07 21:10:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-07 21:10:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-07 21:10:02] Running cvmfs_config stat atlas.cern.ch
[2025-05-07 21:10:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-07 21:10:03] 2.11.2.0 9271 69067 384008 145730 0 490 13020239 18432001 22931 130560 0 232987133 99.005 552368398 35499 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-05-07 21:10:03] CVMFS is ok
[2025-05-07 21:10:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-07 21:10:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-07 21:10:03] Further information can be found at the LHC@home message board.
[2025-05-07 21:10:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-07 21:10:03] Checking for apptainer binary...
[2025-05-07 21:10:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-07 21:10:03] Running /usr/bin/apptainer --version
[2025-05-07 21:10:03] apptainer version 1.3.2-1.el7
[2025-05-07 21:10:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-07 21:10:10] c-211-18.aglt2.org
[2025-05-07 21:10:10] apptainer works
[2025-05-07 21:10:10] Set ATHENA_PROC_NUMBER=10
[2025-05-07 21:10:10] Set ATHENA_CORE_NUMBER=10
[2025-05-07 21:10:10] Starting ATLAS job with PandaID=6637467651
[2025-05-07 21:10:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-08 06:39:14]  *** The last 200 lines of the pilot log: ***
[2025-05-08 06:39:14] 2025-05-08 10:38:59,373 | INFO     | mean y: 2516311.577060932
[2025-05-08 06:39:14] 2025-05-08 10:38:59,373 | INFO     | -- intersect: -15551408481.175968
[2025-05-08 06:39:14] 2025-05-08 10:38:59,373 | INFO     | intersect: -15551408481.175968
[2025-05-08 06:39:14] 2025-05-08 10:38:59,374 | INFO     | chi2: 7.478699978525196
[2025-05-08 06:39:14] 2025-05-08 10:38:59,376 | INFO     | sum of square deviations: 52439082578.5027
[2025-05-08 06:39:14] 2025-05-08 10:38:59,389 | INFO     | sum of deviations: 513223015539.28503
[2025-05-08 06:39:14] 2025-05-08 10:38:59,389 | INFO     | mean x: 1746683537.3110306
[2025-05-08 06:39:14] 2025-05-08 10:38:59,390 | INFO     | mean y: 2519839.4285714286
[2025-05-08 06:39:14] 2025-05-08 10:38:59,390 | INFO     | -- intersect: -17092329042.978947
[2025-05-08 06:39:14] 2025-05-08 10:38:59,390 | INFO     | intersect: -17092329042.978947
[2025-05-08 06:39:14] 2025-05-08 10:38:59,391 | INFO     | chi2: 6.714489520347027
[2025-05-08 06:39:14] 2025-05-08 10:38:59,391 | INFO     | current chi2=6.714489520347027 (change=10.218493326013478 %)
[2025-05-08 06:39:14] 2025-05-08 10:38:59,391 | INFO     | right removable region: 552
[2025-05-08 06:39:14] 2025-05-08 10:38:59,392 | INFO     | sum of square deviations: 52438977658.50272
[2025-05-08 06:39:14] 2025-05-08 10:38:59,407 | INFO     | sum of deviations: 312923410700.338
[2025-05-08 06:39:14] 2025-05-08 10:38:59,407 | INFO     | mean x: 1746683842.3110306
[2025-05-08 06:39:14] 2025-05-08 10:38:59,408 | INFO     | mean y: 2534023.108499096
[2025-05-08 06:39:14] 2025-05-08 10:38:59,408 | INFO     | -- intersect: -10420595674.625301
[2025-05-08 06:39:14] 2025-05-08 10:38:59,408 | INFO     | intersect: -10420595674.625301
[2025-05-08 06:39:14] 2025-05-08 10:38:59,409 | INFO     | chi2: 4.22442847028433
[2025-05-08 06:39:14] 2025-05-08 10:38:59,409 | INFO     | current chi2=4.22442847028433 (change=43.51386628137755 %)
[2025-05-08 06:39:14] 2025-05-08 10:38:59,410 | INFO     | sum of square deviations: 51029354583.01425
[2025-05-08 06:39:14] 2025-05-08 10:38:59,417 | INFO     | monitor loop #1851: job 0:6637467651 is in state 'finished'
[2025-05-08 06:39:14] 2025-05-08 10:38:59,418 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-08 06:39:14] 2025-05-08 10:38:59,422 | INFO     | sum of deviations: 181421290276.63498
[2025-05-08 06:39:14] 2025-05-08 10:38:59,423 | INFO     | mean x: 1746683994.8138685
[2025-05-08 06:39:14] 2025-05-08 10:38:59,423 | INFO     | mean y: 2548248.1532846717
[2025-05-08 06:39:14] 2025-05-08 10:38:59,423 | INFO     | -- intersect: -6207321867.471468
[2025-05-08 06:39:14] 2025-05-08 10:38:59,423 | INFO     | intersect: -6207321867.471468
[2025-05-08 06:39:14] 2025-05-08 10:38:59,424 | INFO     | chi2: 2.319124035084375
[2025-05-08 06:39:14] 2025-05-08 10:38:59,424 | INFO     | current chi2=2.319124035084375 (change=45.10206406860326 %)
[2025-05-08 06:39:14] 2025-05-08 10:38:59,425 | INFO     | sum of square deviations: 49645220357.517296
[2025-05-08 06:39:14] 2025-05-08 10:38:59,435 | INFO     | sum of deviations: 77101628604.7717
[2025-05-08 06:39:14] 2025-05-08 10:38:59,435 | INFO     | mean x: 1746684147.3167586
[2025-05-08 06:39:14] 2025-05-08 10:38:59,436 | INFO     | mean y: 2559728.2338858196
[2025-05-08 06:39:14] 2025-05-08 10:38:59,436 | INFO     | -- intersect: -2710132278.0947146
[2025-05-08 06:39:14] 2025-05-08 10:38:59,436 | INFO     | intersect: -2710132278.0947146
[2025-05-08 06:39:14] 2025-05-08 10:38:59,437 | INFO     | chi2: 1.0521206958305123
[2025-05-08 06:39:14] 2025-05-08 10:38:59,437 | INFO     | current chi2=1.0521206958305123 (change=54.63284067976839 %)
[2025-05-08 06:39:14] 2025-05-08 10:38:59,439 | INFO     | sum of square deviations: 48286342419.5113
[2025-05-08 06:39:14] 2025-05-08 10:38:59,449 | INFO     | sum of deviations: 38255581800.95906
[2025-05-08 06:39:14] 2025-05-08 10:38:59,450 | INFO     | mean x: 1746684299.8197026
[2025-05-08 06:39:14] 2025-05-08 10:38:59,450 | INFO     | mean y: 2564083.4944237918
[2025-05-08 06:39:14] 2025-05-08 10:38:59,450 | INFO     | -- intersect: -1381272851.8374822
[2025-05-08 06:39:14] 2025-05-08 10:38:59,450 | INFO     | intersect: -1381272851.8374822
[2025-05-08 06:39:14] 2025-05-08 10:38:59,451 | INFO     | chi2: 0.889144901935538
[2025-05-08 06:39:14] 2025-05-08 10:38:59,451 | INFO     | current chi2=0.889144901935538 (change=15.490218426539565 %)
[2025-05-08 06:39:14] 2025-05-08 10:38:59,452 | INFO     | left removable region: 40
[2025-05-08 06:39:14] 2025-05-08 10:38:59,452 | INFO     | sum of square deviations: 41618534923.529175
[2025-05-08 06:39:14] 2025-05-08 10:38:59,461 | INFO     | sum of deviations: 38066491781.83203
[2025-05-08 06:39:14] 2025-05-08 10:38:59,461 | INFO     | mean x: 1746684726.8261719
[2025-05-08 06:39:14] 2025-05-08 10:38:59,461 | INFO     | mean y: 2572407.86328125
[2025-05-08 06:39:14] 2025-05-08 10:38:59,462 | INFO     | -- intersect: -1595036924.6456718
[2025-05-08 06:39:14] 2025-05-08 10:38:59,462 | INFO     | intersect: -1595036924.6456718
[2025-05-08 06:39:14] 2025-05-08 10:38:59,463 | INFO     | chi2: 0.004203148076875113
[2025-05-08 06:39:14] 2025-05-08 10:38:59,463 | INFO     | -- intersect: -1595036924.6456718
[2025-05-08 06:39:14] 2025-05-08 10:38:59,463 | INFO     | current memory leak: 0.91 B/s (using 512 data points, chi2=0.00)
[2025-05-08 06:39:14] 2025-05-08 10:38:59,465 | INFO     | ..............................
[2025-05-08 06:39:14] 2025-05-08 10:38:59,465 | INFO     | . Timing measurements:
[2025-05-08 06:39:14] 2025-05-08 10:38:59,465 | INFO     | . get job = 0 s
[2025-05-08 06:39:14] 2025-05-08 10:38:59,465 | INFO     | . initial setup = 1 s
[2025-05-08 06:39:14] 2025-05-08 10:38:59,466 | INFO     | . payload setup = 17 s
[2025-05-08 06:39:14] 2025-05-08 10:38:59,466 | INFO     | . stage-in = 0 s
[2025-05-08 06:39:14] 2025-05-08 10:38:59,467 | INFO     | . payload execution = 34012 s
[2025-05-08 06:39:14] 2025-05-08 10:38:59,467 | INFO     | . stage-out = 4 s
[2025-05-08 06:39:14] 2025-05-08 10:38:59,468 | INFO     | . log creation = 0 s
[2025-05-08 06:39:14] 2025-05-08 10:38:59,468 | INFO     | ..............................
[2025-05-08 06:39:14] 2025-05-08 10:38:59,744 | INFO     | 
[2025-05-08 06:39:14] 2025-05-08 10:38:59,744 | INFO     | job summary report
[2025-05-08 06:39:14] 2025-05-08 10:38:59,744 | INFO     | --------------------------------------------------
[2025-05-08 06:39:14] 2025-05-08 10:38:59,744 | INFO     | PanDA job id: 6637467651
[2025-05-08 06:39:14] 2025-05-08 10:38:59,744 | INFO     | task id: 44506063
[2025-05-08 06:39:14] 2025-05-08 10:38:59,744 | INFO     | errors: (none)
[2025-05-08 06:39:14] 2025-05-08 10:38:59,745 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-08 06:39:14] 2025-05-08 10:38:59,745 | INFO     | pilot state: finished 
[2025-05-08 06:39:14] 2025-05-08 10:38:59,745 | INFO     | transexitcode: 0
[2025-05-08 06:39:14] 2025-05-08 10:38:59,745 | INFO     | exeerrorcode: 0
[2025-05-08 06:39:14] 2025-05-08 10:38:59,745 | INFO     | exeerrordiag: 
[2025-05-08 06:39:14] 2025-05-08 10:38:59,746 | INFO     | exitcode: 0
[2025-05-08 06:39:14] 2025-05-08 10:38:59,746 | INFO     | exitmsg: OK
[2025-05-08 06:39:14] 2025-05-08 10:38:59,746 | INFO     | cpuconsumptiontime: 92916 s
[2025-05-08 06:39:14] 2025-05-08 10:38:59,746 | INFO     | nevents: 400
[2025-05-08 06:39:14] 2025-05-08 10:38:59,746 | INFO     | neventsw: 0
[2025-05-08 06:39:14] 2025-05-08 10:38:59,746 | INFO     | pid: 6076
[2025-05-08 06:39:14] 2025-05-08 10:38:59,746 | INFO     | pgrp: 6076
[2025-05-08 06:39:14] 2025-05-08 10:38:59,747 | INFO     | corecount: 10
[2025-05-08 06:39:14] 2025-05-08 10:38:59,747 | INFO     | event service: False
[2025-05-08 06:39:14] 2025-05-08 10:38:59,747 | INFO     | sizes: {0: 2393568, 1: 2393767, 11: 2393973, 12: 2394001, 34033: 2432303, 34034: 2432302, 34039: 2441427, 34043: 2441483, 34082: 2441653}
[2025-05-08 06:39:14] 2025-05-08 10:38:59,747 | INFO     | --------------------------------------------------
[2025-05-08 06:39:14] 2025-05-08 10:38:59,747 | INFO     | 
[2025-05-08 06:39:14] 2025-05-08 10:38:59,747 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-05-08 06:39:14] 2025-05-08 10:38:59,791 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,791 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,791 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,792 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,792 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,792 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,792 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,792 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,792 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,792 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,793 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,793 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,793 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,793 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,793 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,793 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,794 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,794 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-08 06:39:14] 2025-05-08 10:38:59,795 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,795 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-08 06:39:14] 2025-05-08 10:38:59,795 | INFO     | job 6637467651 has completed (purged errors)
[2025-05-08 06:39:14] 2025-05-08 10:38:59,796 | INFO     | overall cleanup function is called
[2025-05-08 06:39:14] 2025-05-08 10:39:00,805 | INFO     | --- collectZombieJob: --- 10, [6076]
[2025-05-08 06:39:14] 2025-05-08 10:39:00,805 | INFO     | zombie collector waiting for pid 6076
[2025-05-08 06:39:14] 2025-05-08 10:39:00,806 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-08 06:39:14] 2025-05-08 10:39:00,806 | INFO     | collected zombie processes
[2025-05-08 06:39:14] 2025-05-08 10:39:00,806 | INFO     | will attempt to kill all subprocesses of pid=6076
[2025-05-08 06:39:14] 2025-05-08 10:39:01,884 | INFO     | process IDs to be killed: [6076] (in reverse order)
[2025-05-08 06:39:14] 2025-05-08 10:39:02,092 | WARNING  | found no corresponding commands to process id(s)
[2025-05-08 06:39:14] 2025-05-08 10:39:02,092 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-08 06:39:14] 2025-05-08 10:39:02,111 | INFO     | did not find any defunct processes belonging to 6076
[2025-05-08 06:39:14] 2025-05-08 10:39:02,129 | INFO     | did not find any defunct processes belonging to 6076
[2025-05-08 06:39:14] 2025-05-08 10:39:02,129 | INFO     | ready for new job
[2025-05-08 06:39:14] 2025-05-08 10:39:02,129 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-08 06:39:14] 2025-05-08 10:39:02,132 | INFO     | **************************************
[2025-05-08 06:39:14] 2025-05-08 10:39:02,133 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-08 06:39:14] 2025-05-08 10:39:02,133 | INFO     | **************************************
[2025-05-08 06:39:14] 2025-05-08 10:39:02,133 | INFO     | 
[2025-05-08 06:39:14] 2025-05-08 10:39:02,135 | INFO     | architecture information:
[2025-05-08 06:39:14] 2025-05-08 10:39:02,136 | INFO     | executing command: cat /etc/os-release
[2025-05-08 06:39:14] 2025-05-08 10:39:02,178 | INFO     | cat /etc/os-release:
[2025-05-08 06:39:14] NAME="CentOS Linux"
[2025-05-08 06:39:14] VERSION="7 (Core)"
[2025-05-08 06:39:14] ID="centos"
[2025-05-08 06:39:14] ID_LIKE="rhel fedora"
[2025-05-08 06:39:14] VERSION_ID="7"
[2025-05-08 06:39:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-08 06:39:14] ANSI_COLOR="0;31"
[2025-05-08 06:39:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-08 06:39:14] HOME_URL="https://www.centos.org/"
[2025-05-08 06:39:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-08 06:39:14] 
[2025-05-08 06:39:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-08 06:39:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-08 06:39:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-08 06:39:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-08 06:39:14] 
[2025-05-08 06:39:14] 2025-05-08 10:39:02,179 | INFO     | **************************************
[2025-05-08 06:39:14] 2025-05-08 10:39:02,682 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-05-08 06:39:14] 2025-05-08 10:39:02,766 | INFO     | sufficient remaining disk space (56950259712 B)
[2025-05-08 06:39:14] 2025-05-08 10:39:02,767 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-08 06:39:14] 2025-05-08 10:39:02,767 | INFO     | current server update state: UPDATING_FINAL
[2025-05-08 06:39:14] 2025-05-08 10:39:02,767 | INFO     | update_server=False
[2025-05-08 06:39:14] 2025-05-08 10:39:02,767 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-08 06:39:14] 2025-05-08 10:39:02,768 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-08 06:39:14] 2025-05-08 10:39:02,768 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-08 06:39:14] 2025-05-08 10:39:02,768 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-08 06:39:14] 2025-05-08 10:39:02,769 | INFO     | found 0 job(s) in 20 queues
[2025-05-08 06:39:14] 2025-05-08 10:39:02,769 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-08 06:39:14] 2025-05-08 10:39:02,769 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-08 06:39:14] 2025-05-08 10:39:02,933 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-08 06:39:14] 2025-05-08 10:39:02,933 | INFO     | aborting loop
[2025-05-08 06:39:14] 2025-05-08 10:39:03,065 | INFO     | all data control threads have been joined
[2025-05-08 06:39:14] 2025-05-08 10:39:03,127 | INFO     | all job control threads have been joined
[2025-05-08 06:39:14] 2025-05-08 10:39:03,773 | INFO     | [job] retrieve thread has finished
[2025-05-08 06:39:14] 2025-05-08 10:39:03,940 | INFO     | [job] job monitor thread has finished
[2025-05-08 06:39:14] 2025-05-08 10:39:03,948 | INFO     | [payload] failed_post thread has finished
[2025-05-08 06:39:14] 2025-05-08 10:39:04,064 | INFO     | all payload control threads have been joined
[2025-05-08 06:39:14] 2025-05-08 10:39:04,071 | INFO     | [data] control thread has finished
[2025-05-08 06:39:14] 2025-05-08 10:39:04,133 | INFO     | [job] control thread has finished
[2025-05-08 06:39:14] 2025-05-08 10:39:04,194 | INFO     | [payload] validate_pre thread has finished
[2025-05-08 06:39:14] 2025-05-08 10:39:04,204 | INFO     | [job] validate thread has finished
[2025-05-08 06:39:14] 2025-05-08 10:39:04,402 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-08 06:39:14] 2025-05-08 10:39:04,424 | INFO     | [payload] validate_post thread has finished
[2025-05-08 06:39:14] 2025-05-08 10:39:04,591 | INFO     | [job] create_data_payload thread has finished
[2025-05-08 06:39:14] 2025-05-08 10:39:04,593 | INFO     | [payload] execute_payloads thread has finished
[2025-05-08 06:39:14] 2025-05-08 10:39:04,768 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-08 06:39:14] 2025-05-08 10:39:04,775 | INFO     | [data] copytool_out thread has finished
[2025-05-08 06:39:14] 2025-05-08 10:39:05,070 | INFO     | [payload] control thread has finished
[2025-05-08 06:39:14] 2025-05-08 10:39:05,271 | INFO     | [data] copytool_in thread has finished
[2025-05-08 06:39:14] 2025-05-08 10:39:05,774 | INFO     | [job] queue monitor thread has finished
[2025-05-08 06:39:14] 2025-05-08 10:39:06,776 | INFO     | [data] queue_monitor thread has finished
[2025-05-08 06:39:14] 2025-05-08 10:39:08,083 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140394559543104)>', '<ExcThread(monitor, started 140394125833984)>']
[2025-05-08 06:39:14] 2025-05-08 10:39:08,810 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-08 06:39:14] 2025-05-08 10:39:08,810 | INFO     | [monitor] control thread has ended
[2025-05-08 06:39:14] 2025-05-08 10:39:13,109 | INFO     | all workflow threads have been joined
[2025-05-08 06:39:14] 2025-05-08 10:39:13,109 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-08 06:39:14] 2025-05-08 10:39:13,110 | INFO     | traces error code: 0
[2025-05-08 06:39:14] 2025-05-08 10:39:13,110 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-08 06:39:14] 2025-05-08 10:39:13,374 [wrapper] ==== pilot stdout END ====
[2025-05-08 06:39:14] 2025-05-08 10:39:13,382 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-08 06:39:14] 2025-05-08 10:39:13,386 [wrapper] pilotpid: 37624
[2025-05-08 06:39:14] 2025-05-08 10:39:13,390 [wrapper] Pilot exit status: 0
[2025-05-08 06:39:14] 2025-05-08 10:39:13,426 [wrapper] pandaids: 6637467651 6637467651
[2025-05-08 06:39:14] 2025-05-08 10:39:13,841 [wrapper] cleanup supervisor_pilot 38823 37625
[2025-05-08 06:39:14] 2025-05-08 10:39:13,872 [wrapper] Test setup, not cleaning
[2025-05-08 06:39:14] 2025-05-08 10:39:13,907 [wrapper] apfmon messages muted
[2025-05-08 06:39:14] 2025-05-08 10:39:13,947 [wrapper] ==== wrapper stdout END ====
[2025-05-08 06:39:14] 2025-05-08 10:39:13,981 [wrapper] ==== wrapper stderr END ====
[2025-05-08 06:39:14]  *** Error codes and diagnostics ***
[2025-05-08 06:39:14]     "exeErrorCode": 0,
[2025-05-08 06:39:14]     "exeErrorDiag": "",
[2025-05-08 06:39:14]     "pilotErrorCode": 0,
[2025-05-08 06:39:14]     "pilotErrorDiag": "",
[2025-05-08 06:39:14]  *** Listing of results directory ***
[2025-05-08 06:39:14] total 637592
[2025-05-08 06:39:14] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-08 06:39:14] -rw-r--r-- 1 boincer umatlas    495897 May  7 15:42 pilot3.tar.gz
[2025-05-08 06:39:14] -rw-r--r-- 1 boincer umatlas      5111 May  7 15:48 queuedata.json
[2025-05-08 06:39:14] -rwx------ 1 boincer umatlas     37140 May  7 15:48 runpilot2-wrapper.sh
[2025-05-08 06:39:14] -rw-r--r-- 1 boincer umatlas       100 May  7 18:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-08 06:39:14] -rwxr-xr-x 1 boincer umatlas      7986 May  7 18:50 run_atlas
[2025-05-08 06:39:14] -rw-r--r-- 1 boincer umatlas       105 May  7 18:50 job.xml
[2025-05-08 06:39:14] -rw-r--r-- 3 boincer umatlas 225262731 May  7 18:50 EVNT.44506061._001688.pool.root.1
[2025-05-08 06:39:14] -rw-r--r-- 3 boincer umatlas 225262731 May  7 18:50 ATLAS.root_0
[2025-05-08 06:39:14] -rw-r--r-- 2 boincer umatlas     17569 May  7 18:50 start_atlas.sh
[2025-05-08 06:39:14] drwxrwx--x 2 boincer umatlas      4096 May  7 18:50 shared
[2025-05-08 06:39:14] -rw-r--r-- 2 boincer umatlas    508877 May  7 18:50 input.tar.gz
[2025-05-08 06:39:14] -rw-r--r-- 1 boincer umatlas         0 May  7 18:50 boinc_lockfile
[2025-05-08 06:39:14] -rw-r--r-- 1 boincer umatlas      2558 May  7 21:10 pandaJob.out
[2025-05-08 06:39:14] -rw------- 1 boincer umatlas       467 May  7 21:10 setup.sh.local
[2025-05-08 06:39:14] -rw------- 1 boincer umatlas    996852 May  7 21:10 agis_schedconf.cvmfs.json
[2025-05-08 06:39:14] -rw-r--r-- 1 boincer umatlas      6037 May  8 06:36 init_data.xml
[2025-05-08 06:39:14] -rw------- 1 boincer umatlas 192205356 May  8 06:36 HITS.44506063._042853.pool.root.1
[2025-05-08 06:39:14] -rw-r--r-- 1 boincer umatlas       532 May  8 06:37 boinc_task_state.xml
[2025-05-08 06:39:14] -rw------- 1 boincer umatlas      1062 May  8 06:38 memory_monitor_summary.json
[2025-05-08 06:39:14] -rw------- 1 boincer umatlas   1596741 May  8 06:38 agis_ddmendpoints.agis.ALL.json
[2025-05-08 06:39:14] -rw------- 1 boincer umatlas    604371 May  8 06:38 log.44506063._042853.job.log.tgz.1
[2025-05-08 06:39:14] -rw-r--r-- 1 boincer umatlas        29 May  8 06:38 wrapper_checkpoint.txt
[2025-05-08 06:39:14] -rw-r--r-- 1 boincer umatlas      8192 May  8 06:38 boinc_mmap_file
[2025-05-08 06:39:14] -rw------- 1 boincer umatlas        96 May  8 06:38 pilot_heartbeat.json
[2025-05-08 06:39:14] -rw------- 1 boincer umatlas      7749 May  8 06:38 heartbeat.json
[2025-05-08 06:39:14] -rw------- 1 boincer umatlas      4476 May  8 06:39 pilotlog.txt
[2025-05-08 06:39:14] -rw------- 1 boincer umatlas   2551297 May  8 06:39 log.44506063._042853.job.log.1
[2025-05-08 06:39:14] -rw------- 1 boincer umatlas       357 May  8 06:39 output.list
[2025-05-08 06:39:14] -rw-r--r-- 1 boincer umatlas       620 May  8 06:39 runtime_log
[2025-05-08 06:39:14] -rw------- 1 boincer umatlas   3174400 May  8 06:39 result.tar.gz
[2025-05-08 06:39:14] -rw------- 1 boincer umatlas       789 May  8 06:39 V2zLDmvvzW7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmGQ7LDmyGnqHo.diag
[2025-05-08 06:39:14] -rw-r--r-- 1 boincer umatlas     11506 May  8 06:39 runtime_log.err
[2025-05-08 06:39:14] -rw-r--r-- 1 boincer umatlas     23189 May  8 06:39 stderr.txt
[2025-05-08 06:39:14] HITS file was successfully produced:
[2025-05-08 06:39:14] -rw------- 1 boincer umatlas 192205356 May  8 06:36 shared/HITS.pool.root.1
[2025-05-08 06:39:14]  *** Contents of shared directory: ***
[2025-05-08 06:39:14] total 411316
[2025-05-08 06:39:14] -rw-r--r-- 3 boincer umatlas 225262731 May  7 18:50 ATLAS.root_0
[2025-05-08 06:39:14] -rw-r--r-- 2 boincer umatlas     17569 May  7 18:50 start_atlas.sh
[2025-05-08 06:39:14] -rw-r--r-- 2 boincer umatlas    508877 May  7 18:50 input.tar.gz
[2025-05-08 06:39:14] -rw------- 1 boincer umatlas 192205356 May  8 06:36 HITS.pool.root.1
[2025-05-08 06:39:14] -rw------- 1 boincer umatlas   3174400 May  8 06:39 result.tar.gz
06:39:16 (26953): run_atlas exited; CPU time 94609.312756
06:39:16 (26953): called boinc_finish(0)

</stderr_txt>
]]>

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