Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-07 07:51:20 (80028): Detected: vboxwrapper 26206
2025-05-07 07:51:20 (80028): Detected: BOINC client v8.0.2
2025-05-07 07:51:21 (80028): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-05-07 07:51:21 (80028): Successfully copied 'init_data.xml' to the shared directory.
2025-05-07 07:51:22 (80028): Create VM. (boinc_eac00edb26a6fc52, slot#17)
2025-05-07 07:51:22 (80028): Setting Memory Size for VM. (4800MB)
2025-05-07 07:51:23 (80028): Setting CPU Count for VM. (8)
2025-05-07 07:51:23 (80028): Setting Chipset Options for VM.
2025-05-07 07:51:23 (80028): Setting Graphics Controller Options for VM.
2025-05-07 07:51:23 (80028): Setting Boot Options for VM.
2025-05-07 07:51:24 (80028): Setting Network Configuration for NAT.
2025-05-07 07:51:24 (80028): Enabling VM Network Access.
2025-05-07 07:51:24 (80028): Disabling USB Support for VM.
2025-05-07 07:51:24 (80028): Disabling COM Port Support for VM.
2025-05-07 07:51:25 (80028): Disabling LPT Port Support for VM.
2025-05-07 07:51:25 (80028): Disabling Audio Support for VM.
2025-05-07 07:51:25 (80028): Disabling Clipboard Support for VM.
2025-05-07 07:51:25 (80028): Disabling Drag and Drop Support for VM.
2025-05-07 07:51:26 (80028): Adding storage controller(s) to VM.
2025-05-07 07:51:26 (80028): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-07 07:51:29 (80028): Adding VirtualBox Guest Additions to VM.
2025-05-07 07:51:29 (80028): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-07 07:51:29 (80028): forwarding host port 63190 to guest port 80
2025-05-07 07:51:30 (80028): Enabling remote desktop for VM.
2025-05-07 07:51:30 (80028): Required extension pack not installed, remote desktop not enabled.
2025-05-07 07:51:30 (80028): Enabling shared directory for VM.
2025-05-07 07:51:31 (80028): Starting VM using VBoxManage interface. (boinc_eac00edb26a6fc52, slot#17)
2025-05-07 07:51:37 (80028): Successfully started VM. (PID = '79792')
2025-05-07 07:51:37 (80028): Reporting VM Process ID to BOINC.
2025-05-07 07:51:37 (80028): Guest Log: BIOS: VirtualBox 7.1.6
2025-05-07 07:51:37 (80028): Guest Log: CPUID EDX: 0x178bfbff
2025-05-07 07:51:37 (80028): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-07 07:51:37 (80028): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-07 07:51:37 (80028): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-07 07:51:37 (80028): Detected: Web Application Enabled (http://localhost:63190)
2025-05-07 07:51:38 (80028): Preference change detected
2025-05-07 07:51:38 (80028): Setting CPU throttle for VM. (90%)
2025-05-07 07:51:38 (80028): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-07 07:51:40 (80028): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-07 07:51:40 (80028): Guest Log: BIOS: Booting from Hard Disk...
2025-05-07 07:51:43 (80028): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-07 07:51:43 (80028): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-07 07:51:43 (80028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-07 07:51:52 (80028): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-07 07:51:52 (80028): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-07 07:52:01 (80028): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-07 07:52:01 (80028): Guest Log: 00:00:00.000327 main     Log opened 2025-05-07T07:51:58.479160000Z
2025-05-07 07:52:01 (80028): Guest Log: 00:00:00.000517 main     OS Product: Linux
2025-05-07 07:52:01 (80028): Guest Log: 00:00:00.000570 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-07 07:52:01 (80028): Guest Log: 00:00:00.000615 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-07 07:52:01 (80028): Guest Log: 00:00:00.000660 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-07 07:52:01 (80028): Guest Log: 00:00:00.000661 main     Process ID: 1375
2025-05-07 07:52:01 (80028): Guest Log: 00:00:00.000662 main     Package type: LINUX_64BITS_GENERIC
2025-05-07 07:52:01 (80028): Guest Log: 00:00:00.001862 main     5.2.32 r132073 started. Verbose level = 0
2025-05-07 07:52:01 (80028): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-07 07:52:01 (80028): Guest Log: [INFO] Mounting shared directory
2025-05-07 07:52:02 (80028): Guest Log: [INFO] Checking for init_data.xml
2025-05-07 07:52:06 (80028): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-07 07:52:06 (80028): Guest Log: [INFO] Detected branch: prod
2025-05-07 07:52:07 (80028): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-07 07:52:07 (80028): Guest Log: Copying input files
2025-05-07 07:52:09 (80028): Guest Log: Copied input files into RunAtlas.
2025-05-07 07:52:09 (80028): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-07 07:52:09 (80028): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-07 07:52:09 (80028): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-07 07:52:09 (80028): Guest Log: Further information can be found at the LHC@home message board.
2025-05-07 07:52:11 (80028): Guest Log: 00:00:10.005629 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 630 813 000ns (GuestNow=1 746 597 130 852 795 000 ns GuestLast=1 746 604 318 483 608 000 ns fSetTimeLastLoop=true )
2025-05-07 07:52:22 (80028): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-07 07:52:22 (80028): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-07 07:52:22 (80028): Guest Log: 2.6.3.0 1670 0 30152 145701 4 1 3117346 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-07 07:52:23 (80028): Guest Log: copied the webapp to /var/www
2025-05-07 07:52:23 (80028): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-07 07:52:23 (80028): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-07 07:52:23 (80028): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-07 07:52:23 (80028): Guest Log:  *** Starting ATLAS job. (PandaID=6636441361 taskID=44506063) ***
2025-05-07 07:56:08 (80028): VM state change detected. (old = 'running', new = 'paused')
2025-05-07 07:56:28 (80028): VM state change detected. (old = 'paused', new = 'running')
2025-05-07 07:59:38 (80028): VM state change detected. (old = 'running', new = 'paused')
2025-05-07 07:59:59 (80028): VM state change detected. (old = 'paused', new = 'running')
2025-05-07 08:12:50 (80028): VM state change detected. (old = 'running', new = 'paused')
2025-05-07 08:13:10 (80028): VM state change detected. (old = 'paused', new = 'running')
2025-05-07 08:27:54 (80028): VM state change detected. (old = 'running', new = 'paused')
2025-05-07 08:28:14 (80028): VM state change detected. (old = 'paused', new = 'running')
2025-05-07 09:02:26 (80028): VM state change detected. (old = 'running', new = 'paused')
2025-05-07 09:02:46 (80028): VM state change detected. (old = 'paused', new = 'running')
2025-05-07 09:03:51 (80028): VM state change detected. (old = 'running', new = 'paused')
2025-05-07 09:04:11 (80028): VM state change detected. (old = 'paused', new = 'running')
2025-05-07 09:33:56 (80028): Status Report: Elapsed Time: '6000.000000'
2025-05-07 09:33:56 (80028): Status Report: CPU Time: '35593.125000'
2025-05-07 10:22:37 (80028): Guest Log:  *** Job finished ***
2025-05-07 10:22:37 (80028): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:30,060 | INFO     | [job] validate thread has finished
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:30,075 | INFO     | [data] copytool_out thread has finished
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:31,791 | INFO     | [data] queue_monitor thread has finished
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:33,365 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139675322226496)>', '<ExcThread(monitor, started 139674743990016)>']
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:34,112 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:34,112 | INFO     | [monitor] control thread has ended
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:38,369 | INFO     | all workflow threads have been joined
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:38,370 | INFO     | end of generic workflow (traces error code: 0)
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:38,370 | INFO     | traces error code: 0
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:38,370 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:38,503 [wrapper] ==== pilot stdout END ====
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:38,514 [wrapper] ==== wrapper stdout RESUME ====
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:38,522 [wrapper] pilotpid: 6015
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:38,529 [wrapper] Pilot exit status: 0
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:38,590 [wrapper] pandaids: 6636441361
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:38,640 [wrapper] cleanup supervisor_pilot  4069 6016
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:38,650 [wrapper] Test setup, not cleaning
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:38,661 [wrapper] apfmon messages muted
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:38,671 [wrapper] ==== wrapper stdout END ====
2025-05-07 10:22:37 (80028): Guest Log: 2025-05-07 08:20:38,680 [wrapper] ==== wrapper stderr END ====
2025-05-07 10:22:37 (80028): Guest Log:  *** Error codes and diagnostics ***
2025-05-07 10:22:37 (80028): Guest Log:     "exeErrorCode": 0,
2025-05-07 10:22:37 (80028): Guest Log:     "exeErrorDiag": "",
2025-05-07 10:22:37 (80028): Guest Log:     "pilotErrorCode": 0,
2025-05-07 10:22:37 (80028): Guest Log:     "pilotErrorDiag": "",
2025-05-07 10:22:37 (80028): Guest Log:  *** Listing of results directory ***
2025-05-07 10:22:37 (80028): Guest Log: total 194160
2025-05-07 10:22:37 (80028): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May  7 02:38 pilot3.tar.gz
2025-05-07 10:22:37 (80028): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May  7 02:45 queuedata.json
2025-05-07 10:22:37 (80028): Guest Log: -rwx------. 1 atlas atlas     37140 May  7 02:46 runpilot2-wrapper.sh
2025-05-07 10:22:37 (80028): Guest Log: -rwxr-xr-x. 1 atlas atlas     12245 May  7 05:52 init_data.xml
2025-05-07 10:22:37 (80028): Guest Log: -rwxr-xr-x. 1 atlas atlas    508881 May  7 05:52 input.tar.gz
2025-05-07 10:22:37 (80028): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May  7 05:52 start_atlas.sh
2025-05-07 10:22:37 (80028): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May  7 05:52 EVNT.44506061._001258.pool.root.1 -> /data/./ATLAS.root_0
2025-05-07 10:22:37 (80028): Guest Log: -rw-r--r--. 1 atlas atlas      2558 May  7 05:52 pandaJob.out
2025-05-07 10:22:37 (80028): Guest Log: -rw-------. 1 atlas atlas       424 May  7 05:52 setup.sh.local
2025-05-07 10:22:37 (80028): Guest Log: -rw-------. 1 atlas atlas    998300 May  7 05:53 agis_schedconf.cvmfs.json
2025-05-07 10:22:37 (80028): Guest Log: -rw-------. 1 atlas atlas   1596741 May  7 05:53 agis_ddmendpoints.agis.ALL.json
2025-05-07 10:22:37 (80028): Guest Log: drwx------. 4 atlas atlas      4096 May  7 05:53 pilot3
2025-05-07 10:22:37 (80028): Guest Log: -rw-------. 1 atlas atlas 192884721 May  7 08:19 HITS.44506063._032053.pool.root.1
2025-05-07 10:22:37 (80028): Guest Log: -rw-------. 1 atlas atlas      1028 May  7 08:19 memory_monitor_summary.json
2025-05-07 10:22:37 (80028): Guest Log: -rw-------. 1 atlas atlas    351399 May  7 08:19 log.44506063._032053.job.log.tgz.1
2025-05-07 10:22:37 (80028): Guest Log: -rw-------. 1 atlas atlas        95 May  7 08:20 pilot_heartbeat.json
2025-05-07 10:22:37 (80028): Guest Log: -rw-------. 1 atlas atlas      7680 May  7 08:20 heartbeat.json
2025-05-07 10:22:37 (80028): Guest Log: -rw-------. 1 atlas atlas      4413 May  7 08:20 pilotlog.txt
2025-05-07 10:22:37 (80028): Guest Log: -rw-------. 1 atlas atlas    729853 May  7 08:20 log.44506063._032053.job.log.1
2025-05-07 10:22:37 (80028): Guest Log: -rw-------. 1 atlas atlas       357 May  7 08:20 output.list
2025-05-07 10:22:37 (80028): Guest Log: -rw-r--r--. 1 atlas atlas       620 May  7 08:20 runtime_log
2025-05-07 10:22:37 (80028): Guest Log: -rw-------. 1 atlas atlas   1095680 May  7 08:20 result.tar.gz
2025-05-07 10:22:37 (80028): Guest Log: -rw-r--r--. 1 atlas atlas     10958 May  7 08:20 runtime_log.err
2025-05-07 10:22:37 (80028): Guest Log: -rw-------. 1 atlas atlas       664 May  7 08:20 RIhLDmnyjW7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmfd5LDmdqGMYo.diag
2025-05-07 10:22:37 (80028): Guest Log: Looking for outputfile HITS.44506063._032053.pool.root.1
2025-05-07 10:22:37 (80028): Guest Log: HITS file was successfully produced
2025-05-07 10:22:37 (80028): Guest Log: -rw-------. 1 atlas atlas 192884721 May  7 08:19 /home/atlas/RunAtlas/HITS.44506063._032053.pool.root.1
2025-05-07 10:22:38 (80028): Guest Log: Successfully finished the ATLAS job!
2025-05-07 10:22:38 (80028): Guest Log: Copying the results back to the shared directory!
2025-05-07 10:22:38 (80028): Guest Log:  *** Contents of shared directory: ***
2025-05-07 10:22:38 (80028): Guest Log: total 406768
2025-05-07 10:22:38 (80028): Guest Log: -rwxrwxrwx. 1 root root 222000360 May  7 05:51 ATLAS.root_0
2025-05-07 10:22:38 (80028): Guest Log: -rwxrwxrwx. 1 root root 192884721 May  7  2025 HITS.pool.root.1
2025-05-07 10:22:38 (80028): Guest Log: -rwxrwxrwx. 1 root root     12245 May  7 05:51 init_data.xml
2025-05-07 10:22:38 (80028): Guest Log: -rwxrwxrwx. 1 root root    508881 May  7 05:11 input.tar.gz
2025-05-07 10:22:38 (80028): Guest Log: -rwxrwxrwx. 1 root root   1095680 May  7  2025 result.tar.gz
2025-05-07 10:22:38 (80028): Guest Log: -rwxrwxrwx. 1 root root     17569 May  7 05:11 start_atlas.sh
2025-05-07 10:22:38 (80028): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-07 10:22:38 (80028): VM Completion File Detected.
2025-05-07 10:22:38 (80028): Powering off VM.
2025-05-07 10:22:39 (80028): Successfully stopped VM.
2025-05-07 10:22:39 (80028): Deregistering VM. (boinc_eac00edb26a6fc52, slot#17)
2025-05-07 10:22:39 (80028): Removing network bandwidth throttle group from VM.
2025-05-07 10:22:39 (80028): Removing VM from VirtualBox.
10:22:44 (80028): called boinc_finish(0)

</stderr_txt>
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