Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:54:15 (16543): wrapper (7.7.26015): starting
05:54:15 (16543): wrapper: running run_atlas (--nthreads 8)
[2025-05-07 05:54:15] Arguments: --nthreads 8
[2025-05-07 05:54:15] Threads: 8
[2025-05-07 05:54:15] Checking for CVMFS
[2025-05-07 05:54:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-07 05:54:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-07 05:54:15] Running cvmfs_config stat atlas.cern.ch
[2025-05-07 05:54:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-07 05:54:15] 2.11.2.0 3243 2694 83912 145698 4 58 17940045 25165825 894 130560 0 2789558 99.756 1013396 1297 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-07 05:54:15] CVMFS is ok
[2025-05-07 05:54:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-07 05:54:15] Checking for apptainer binary...
[2025-05-07 05:54:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-07 05:54:15] Running /usr/bin/apptainer --version
[2025-05-07 05:54:16] apptainer version 1.3.2-1.el7
[2025-05-07 05:54:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-07 05:54:17] cg-vwn424.simple-grid.lan
[2025-05-07 05:54:17] apptainer works
[2025-05-07 05:54:17] Set ATHENA_PROC_NUMBER=8
[2025-05-07 05:54:17] Set ATHENA_CORE_NUMBER=8
[2025-05-07 05:54:17] Starting ATLAS job with PandaID=6635280582
[2025-05-07 05:54:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-07 12:37:10]  *** The last 200 lines of the pilot log: ***
[2025-05-07 12:37:10] 2025-05-07 08:36:43,512 | INFO     | -- intersect: -38049185249.40447
[2025-05-07 12:37:10] 2025-05-07 08:36:43,512 | INFO     | intersect: -38049185249.40447
[2025-05-07 12:37:10] 2025-05-07 08:36:43,513 | INFO     | chi2: 4.830325872808217
[2025-05-07 12:37:10] 2025-05-07 08:36:43,514 | INFO     | sum of square deviations: 6103286527.5
[2025-05-07 12:37:10] 2025-05-07 08:36:43,516 | INFO     | sum of deviations: 155637067130.0
[2025-05-07 12:37:10] 2025-05-07 08:36:43,516 | INFO     | mean x: 1746598316.5
[2025-05-07 12:37:10] 2025-05-07 08:36:43,516 | INFO     | mean y: 2431612.051851852
[2025-05-07 12:37:10] 2025-05-07 08:36:43,517 | INFO     | -- intersect: -44536758578.25427
[2025-05-07 12:37:10] 2025-05-07 08:36:43,517 | INFO     | intersect: -44536758578.25427
[2025-05-07 12:37:10] 2025-05-07 08:36:43,519 | INFO     | chi2: 4.062417548250308
[2025-05-07 12:37:10] 2025-05-07 08:36:43,520 | INFO     | current chi2=4.062417548250308 (change=15.89765048525532 %)
[2025-05-07 12:37:10] 2025-05-07 08:36:43,520 | INFO     | right removable region: 269
[2025-05-07 12:37:10] 2025-05-07 08:36:43,520 | INFO     | sum of square deviations: 6103286527.5
[2025-05-07 12:37:10] 2025-05-07 08:36:43,523 | INFO     | sum of deviations: 72203219221.5
[2025-05-07 12:37:10] 2025-05-07 08:36:43,523 | INFO     | mean x: 1746598621.5
[2025-05-07 12:37:10] 2025-05-07 08:36:43,523 | INFO     | mean y: 2455120.1296296297
[2025-05-07 12:37:10] 2025-05-07 08:36:43,523 | INFO     | -- intersect: -20660189930.518322
[2025-05-07 12:37:10] 2025-05-07 08:36:43,523 | INFO     | intersect: -20660189930.518322
[2025-05-07 12:37:10] 2025-05-07 08:36:43,524 | INFO     | chi2: 2.337706241507411
[2025-05-07 12:37:10] 2025-05-07 08:36:43,524 | INFO     | current chi2=2.337706241507411 (change=51.603550090331 %)
[2025-05-07 12:37:10] 2025-05-07 08:36:43,524 | INFO     | sum of square deviations: 5770452380.0
[2025-05-07 12:37:10] 2025-05-07 08:36:43,527 | INFO     | sum of deviations: 23415598165.000004
[2025-05-07 12:37:10] 2025-05-07 08:36:43,527 | INFO     | mean x: 1746598774.0
[2025-05-07 12:37:10] 2025-05-07 08:36:43,527 | INFO     | mean y: 2477474.0754716983
[2025-05-07 12:37:10] 2025-05-07 08:36:43,527 | INFO     | -- intersect: -7084948667.627765
[2025-05-07 12:37:10] 2025-05-07 08:36:43,527 | INFO     | intersect: -7084948667.627765
[2025-05-07 12:37:10] 2025-05-07 08:36:43,527 | INFO     | chi2: 1.1961066978814228
[2025-05-07 12:37:10] 2025-05-07 08:36:43,528 | INFO     | current chi2=1.1961066978814228 (change=48.83417442945511 %)
[2025-05-07 12:37:10] 2025-05-07 08:36:43,528 | INFO     | sum of square deviations: 5449944045.0
[2025-05-07 12:37:10] 2025-05-07 08:36:43,530 | INFO     | sum of deviations: -2109976183.5000038
[2025-05-07 12:37:10] 2025-05-07 08:36:43,531 | INFO     | mean x: 1746598926.5
[2025-05-07 12:37:10] 2025-05-07 08:36:43,531 | INFO     | mean y: 2489554.3884615386
[2025-05-07 12:37:10] 2025-05-07 08:36:43,531 | INFO     | -- intersect: 678695054.2270703
[2025-05-07 12:37:10] 2025-05-07 08:36:43,531 | INFO     | intersect: 678695054.2270703
[2025-05-07 12:37:10] 2025-05-07 08:36:43,531 | INFO     | chi2: 0.7968833949387625
[2025-05-07 12:37:10] 2025-05-07 08:36:43,532 | INFO     | current chi2=0.7968833949387625 (change=33.37689719903547 %)
[2025-05-07 12:37:10] 2025-05-07 08:36:43,532 | INFO     | sum of square deviations: 5141528960.0
[2025-05-07 12:37:10] 2025-05-07 08:36:43,541 | INFO     | sum of deviations: -3002579576.000002
[2025-05-07 12:37:10] 2025-05-07 08:36:43,541 | INFO     | mean x: 1746599079.0
[2025-05-07 12:37:10] 2025-05-07 08:36:43,541 | INFO     | mean y: 2489993.3333333335
[2025-05-07 12:37:10] 2025-05-07 08:36:43,541 | INFO     | -- intersect: 1022478942.7033304
[2025-05-07 12:37:10] 2025-05-07 08:36:43,541 | INFO     | intersect: 1022478942.7033304
[2025-05-07 12:37:10] 2025-05-07 08:36:43,542 | INFO     | chi2: 0.7957823454846535
[2025-05-07 12:37:10] 2025-05-07 08:36:43,542 | INFO     | current chi2=0.7957823454846535 (change=0.13816945629712227 %)
[2025-05-07 12:37:10] 2025-05-07 08:36:43,542 | INFO     | left removable region: 40
[2025-05-07 12:37:10] 2025-05-07 08:36:43,542 | INFO     | sum of square deviations: 3723716330.0
[2025-05-07 12:37:10] 2025-05-07 08:36:43,544 | INFO     | sum of deviations: 8141595579.999999
[2025-05-07 12:37:10] 2025-05-07 08:36:43,544 | INFO     | mean x: 1746599506.0
[2025-05-07 12:37:10] 2025-05-07 08:36:43,544 | INFO     | mean y: 2501332.419213974
[2025-05-07 12:37:10] 2025-05-07 08:36:43,545 | INFO     | -- intersect: -3816293000.413272
[2025-05-07 12:37:10] 2025-05-07 08:36:43,545 | INFO     | intersect: -3816293000.413272
[2025-05-07 12:37:10] 2025-05-07 08:36:43,545 | INFO     | chi2: 0.0007031281426779278
[2025-05-07 12:37:10] 2025-05-07 08:36:43,545 | INFO     | -- intersect: -3816293000.413272
[2025-05-07 12:37:10] 2025-05-07 08:36:43,545 | INFO     | current memory leak: 2.19 B/s (using 229 data points, chi2=0.00)
[2025-05-07 12:37:10] 2025-05-07 08:36:43,546 | INFO     | ..............................
[2025-05-07 12:37:10] 2025-05-07 08:36:43,546 | INFO     | . Timing measurements:
[2025-05-07 12:37:10] 2025-05-07 08:36:43,546 | INFO     | . get job = 0 s
[2025-05-07 12:37:10] 2025-05-07 08:36:43,546 | INFO     | . initial setup = 2 s
[2025-05-07 12:37:10] 2025-05-07 08:36:43,546 | INFO     | . payload setup = 10 s
[2025-05-07 12:37:10] 2025-05-07 08:36:43,547 | INFO     | . stage-in = 0 s
[2025-05-07 12:37:10] 2025-05-07 08:36:43,547 | INFO     | . payload execution = 16778 s
[2025-05-07 12:37:10] 2025-05-07 08:36:43,547 | INFO     | . stage-out = 2 s
[2025-05-07 12:37:10] 2025-05-07 08:36:43,547 | INFO     | . log creation = 0 s
[2025-05-07 12:37:10] 2025-05-07 08:36:43,547 | INFO     | ..............................
[2025-05-07 12:37:10] 2025-05-07 08:36:43,751 | INFO     | 
[2025-05-07 12:37:10] 2025-05-07 08:36:43,751 | INFO     | job summary report
[2025-05-07 12:37:10] 2025-05-07 08:36:43,752 | INFO     | --------------------------------------------------
[2025-05-07 12:37:10] 2025-05-07 08:36:43,752 | INFO     | PanDA job id: 6635280582
[2025-05-07 12:37:10] 2025-05-07 08:36:43,752 | INFO     | task id: 44506063
[2025-05-07 12:37:10] 2025-05-07 08:36:43,752 | INFO     | errors: (none)
[2025-05-07 12:37:10] 2025-05-07 08:36:43,752 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-07 12:37:10] 2025-05-07 08:36:43,752 | INFO     | pilot state: finished 
[2025-05-07 12:37:10] 2025-05-07 08:36:43,752 | INFO     | transexitcode: 0
[2025-05-07 12:37:10] 2025-05-07 08:36:43,752 | INFO     | exeerrorcode: 0
[2025-05-07 12:37:10] 2025-05-07 08:36:43,752 | INFO     | exeerrordiag: 
[2025-05-07 12:37:10] 2025-05-07 08:36:43,753 | INFO     | exitcode: 0
[2025-05-07 12:37:10] 2025-05-07 08:36:43,753 | INFO     | exitmsg: OK
[2025-05-07 12:37:10] 2025-05-07 08:36:43,753 | INFO     | cpuconsumptiontime: 61361 s
[2025-05-07 12:37:10] 2025-05-07 08:36:43,753 | INFO     | nevents: 400
[2025-05-07 12:37:10] 2025-05-07 08:36:43,753 | INFO     | neventsw: 0
[2025-05-07 12:37:10] 2025-05-07 08:36:43,753 | INFO     | pid: 26637
[2025-05-07 12:37:10] 2025-05-07 08:36:43,753 | INFO     | pgrp: 26637
[2025-05-07 12:37:10] 2025-05-07 08:36:43,758 | INFO     | corecount: 8
[2025-05-07 12:37:10] 2025-05-07 08:36:43,758 | INFO     | event service: False
[2025-05-07 12:37:10] 2025-05-07 08:36:43,759 | INFO     | sizes: {0: 2393568, 1: 2393767, 2: 2393767, 7: 2394001, 12: 2394029, 16792: 2424812, 16793: 2424939, 16795: 2433964, 16798: 2434020, 16911: 2434190}
[2025-05-07 12:37:10] 2025-05-07 08:36:43,759 | INFO     | --------------------------------------------------
[2025-05-07 12:37:10] 2025-05-07 08:36:43,759 | INFO     | 
[2025-05-07 12:37:10] 2025-05-07 08:36:43,759 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-05-07 12:37:10] 2025-05-07 08:36:44,086 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,086 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,086 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,086 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,086 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,087 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,087 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,087 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,087 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,087 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,087 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,087 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,087 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,087 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,087 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,088 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,088 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,088 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-07 12:37:10] 2025-05-07 08:36:44,088 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,088 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-07 12:37:10] 2025-05-07 08:36:44,088 | INFO     | job 6635280582 has completed (purged errors)
[2025-05-07 12:37:10] 2025-05-07 08:36:44,088 | INFO     | overall cleanup function is called
[2025-05-07 12:37:10] 2025-05-07 08:36:45,097 | INFO     | --- collectZombieJob: --- 10, [26637]
[2025-05-07 12:37:10] 2025-05-07 08:36:45,097 | INFO     | zombie collector waiting for pid 26637
[2025-05-07 12:37:10] 2025-05-07 08:36:45,098 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-07 12:37:10] 2025-05-07 08:36:45,098 | INFO     | collected zombie processes
[2025-05-07 12:37:10] 2025-05-07 08:36:45,098 | INFO     | will attempt to kill all subprocesses of pid=26637
[2025-05-07 12:37:10] 2025-05-07 08:36:45,188 | INFO     | process IDs to be killed: [26637] (in reverse order)
[2025-05-07 12:37:10] 2025-05-07 08:36:46,065 | WARNING  | found no corresponding commands to process id(s)
[2025-05-07 12:37:10] 2025-05-07 08:36:46,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-07 12:37:10] 2025-05-07 08:36:46,067 | INFO     | did not find any defunct processes belonging to 26637
[2025-05-07 12:37:10] 2025-05-07 08:36:46,069 | INFO     | did not find any defunct processes belonging to 26637
[2025-05-07 12:37:10] 2025-05-07 08:36:46,069 | INFO     | ready for new job
[2025-05-07 12:37:10] 2025-05-07 08:36:46,070 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-07 12:37:10] 2025-05-07 08:36:46,071 | INFO     | **************************************
[2025-05-07 12:37:10] 2025-05-07 08:36:46,072 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-07 12:37:10] 2025-05-07 08:36:46,072 | INFO     | **************************************
[2025-05-07 12:37:10] 2025-05-07 08:36:46,072 | INFO     | 
[2025-05-07 12:37:10] 2025-05-07 08:36:46,072 | INFO     | pilot is running in a VM
[2025-05-07 12:37:10] 2025-05-07 08:36:46,073 | INFO     | architecture information:
[2025-05-07 12:37:10] 2025-05-07 08:36:46,079 | INFO     | executing command: cat /etc/os-release
[2025-05-07 12:37:10] 2025-05-07 08:36:46,313 | INFO     | cat /etc/os-release:
[2025-05-07 12:37:10] NAME="CentOS Linux"
[2025-05-07 12:37:10] VERSION="7 (Core)"
[2025-05-07 12:37:10] ID="centos"
[2025-05-07 12:37:10] ID_LIKE="rhel fedora"
[2025-05-07 12:37:10] VERSION_ID="7"
[2025-05-07 12:37:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-07 12:37:10] ANSI_COLOR="0;31"
[2025-05-07 12:37:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-07 12:37:10] HOME_URL="https://www.centos.org/"
[2025-05-07 12:37:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-07 12:37:10] 
[2025-05-07 12:37:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-07 12:37:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-07 12:37:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-07 12:37:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-07 12:37:10] 
[2025-05-07 12:37:10] 2025-05-07 08:36:46,313 | INFO     | **************************************
[2025-05-07 12:37:10] 2025-05-07 08:36:46,816 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-05-07 12:37:10] 2025-05-07 08:36:46,986 | INFO     | sufficient remaining disk space (496140025856 B)
[2025-05-07 12:37:10] 2025-05-07 08:36:46,986 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-07 12:37:10] 2025-05-07 08:36:46,987 | INFO     | current server update state: UPDATING_FINAL
[2025-05-07 12:37:10] 2025-05-07 08:36:46,987 | INFO     | update_server=False
[2025-05-07 12:37:10] 2025-05-07 08:36:46,987 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-07 12:37:10] 2025-05-07 08:36:46,987 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-07 12:37:10] 2025-05-07 08:36:46,994 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-07 12:37:10] 2025-05-07 08:36:46,995 | INFO     | found 0 job(s) in 20 queues
[2025-05-07 12:37:10] 2025-05-07 08:36:46,995 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-07 12:37:10] 2025-05-07 08:36:46,995 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-07 12:37:10] 2025-05-07 08:36:47,109 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-07 12:37:10] 2025-05-07 08:36:47,110 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-07 12:37:10] 2025-05-07 08:36:47,110 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-07 12:37:10] 2025-05-07 08:36:47,110 | INFO     | will abort loop
[2025-05-07 12:37:10] 2025-05-07 08:36:47,110 | INFO     | all data control threads have been joined
[2025-05-07 12:37:10] 2025-05-07 08:36:47,792 | INFO     | all job control threads have been joined
[2025-05-07 12:37:10] 2025-05-07 08:36:47,992 | INFO     | [job] retrieve thread has finished
[2025-05-07 12:37:10] 2025-05-07 08:36:48,015 | INFO     | [payload] validate_post thread has finished
[2025-05-07 12:37:10] 2025-05-07 08:36:48,115 | INFO     | [job] job monitor thread has finished
[2025-05-07 12:37:10] 2025-05-07 08:36:48,116 | INFO     | [data] control thread has finished
[2025-05-07 12:37:10] 2025-05-07 08:36:48,318 | INFO     | all payload control threads have been joined
[2025-05-07 12:37:10] 2025-05-07 08:36:48,684 | INFO     | [job] create_data_payload thread has finished
[2025-05-07 12:37:10] 2025-05-07 08:36:48,717 | INFO     | [job] validate thread has finished
[2025-05-07 12:37:10] 2025-05-07 08:36:48,770 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-07 12:37:10] 2025-05-07 08:36:48,798 | INFO     | [job] control thread has finished
[2025-05-07 12:37:10] 2025-05-07 08:36:48,878 | INFO     | [data] copytool_in thread has finished
[2025-05-07 12:37:10] 2025-05-07 08:36:48,973 | INFO     | [payload] failed_post thread has finished
[2025-05-07 12:37:10] 2025-05-07 08:36:48,994 | INFO     | [data] copytool_out thread has finished
[2025-05-07 12:37:10] 2025-05-07 08:36:49,168 | INFO     | [payload] execute_payloads thread has finished
[2025-05-07 12:37:10] 2025-05-07 08:36:49,196 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-07 12:37:10] 2025-05-07 08:36:49,210 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-07 12:37:10] 2025-05-07 08:36:49,266 | INFO     | [payload] validate_pre thread has finished
[2025-05-07 12:37:10] 2025-05-07 08:36:49,324 | INFO     | [payload] control thread has finished
[2025-05-07 12:37:10] 2025-05-07 08:36:49,776 | INFO     | [job] queue monitor thread has finished
[2025-05-07 12:37:10] 2025-05-07 08:36:53,219 | INFO     | [data] queue_monitor thread has finished
[2025-05-07 12:37:10] 2025-05-07 08:36:54,827 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139689846454080)>', '<ExcThread(monitor, started 139689113679616)>']
[2025-05-07 12:37:10] 2025-05-07 08:36:55,042 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-07 12:37:10] 2025-05-07 08:36:55,042 | INFO     | [monitor] control thread has ended
[2025-05-07 12:37:10] 2025-05-07 08:36:59,855 | INFO     | all workflow threads have been joined
[2025-05-07 12:37:10] 2025-05-07 08:36:59,856 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-07 12:37:10] 2025-05-07 08:36:59,856 | INFO     | traces error code: 0
[2025-05-07 12:37:10] 2025-05-07 08:36:59,856 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-07 12:37:10] 2025-05-07 08:37:00,229 [wrapper] ==== pilot stdout END ====
[2025-05-07 12:37:10] 2025-05-07 08:37:00,347 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-07 12:37:10] 2025-05-07 08:37:00,457 [wrapper] pilotpid: 20182
[2025-05-07 12:37:10] 2025-05-07 08:37:00,559 [wrapper] Pilot exit status: 0
[2025-05-07 12:37:10] 2025-05-07 08:37:01,112 [wrapper] pandaids: 6635280582
[2025-05-07 12:37:10] 2025-05-07 08:37:01,942 [wrapper] cleanup supervisor_pilot 27062 20183
[2025-05-07 12:37:10] 2025-05-07 08:37:01,966 [wrapper] Test setup, not cleaning
[2025-05-07 12:37:10] 2025-05-07 08:37:02,046 [wrapper] apfmon messages muted
[2025-05-07 12:37:10] 2025-05-07 08:37:02,186 [wrapper] ==== wrapper stdout END ====
[2025-05-07 12:37:10] 2025-05-07 08:37:02,283 [wrapper] ==== wrapper stderr END ====
[2025-05-07 12:37:10]  *** Error codes and diagnostics ***
[2025-05-07 12:37:10]     "exeErrorCode": 0,
[2025-05-07 12:37:10]     "exeErrorDiag": "",
[2025-05-07 12:37:10]     "pilotErrorCode": 0,
[2025-05-07 12:37:10]     "pilotErrorDiag": "",
[2025-05-07 12:37:10]  *** Listing of results directory ***
[2025-05-07 12:37:10] total 419192
[2025-05-07 12:37:10] -rw-r--r--. 1 boinc boinc    495897 May  6 21:56 pilot3.tar.gz
[2025-05-07 12:37:10] -rw-r--r--. 1 boinc boinc      5111 May  6 22:02 queuedata.json
[2025-05-07 12:37:10] -rwx------. 1 boinc boinc     37140 May  6 22:02 runpilot2-wrapper.sh
[2025-05-07 12:37:10] -rw-r--r--. 1 boinc boinc       100 May  7 05:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-07 12:37:10] -rwxr-xr-x. 1 boinc boinc      7986 May  7 05:54 run_atlas
[2025-05-07 12:37:10] -rw-r--r--. 1 boinc boinc       105 May  7 05:54 job.xml
[2025-05-07 12:37:10] -rw-r--r--. 2 boinc boinc 222616097 May  7 05:54 EVNT.44506061._001091.pool.root.1
[2025-05-07 12:37:10] drwxrwx--x. 2 boinc boinc        68 May  7 05:54 shared
[2025-05-07 12:37:10] -rw-r--r--. 2 boinc boinc    508877 May  7 05:54 input.tar.gz
[2025-05-07 12:37:10] -rw-r--r--. 1 boinc boinc      6368 May  7 05:54 init_data.xml
[2025-05-07 12:37:10] -rw-r--r--. 2 boinc boinc     17569 May  7 05:54 start_atlas.sh
[2025-05-07 12:37:10] -rw-r--r--. 1 boinc boinc         0 May  7 05:54 boinc_lockfile
[2025-05-07 12:37:10] -rw-r--r--. 1 boinc boinc      2558 May  7 05:54 pandaJob.out
[2025-05-07 12:37:10] -rw-------. 1 boinc boinc       424 May  7 05:54 setup.sh.local
[2025-05-07 12:37:10] -rw-------. 1 boinc boinc    998332 May  7 05:54 agis_schedconf.cvmfs.json
[2025-05-07 12:37:10] drwx------. 4 boinc boinc      4096 May  7 05:54 pilot3
[2025-05-07 12:37:10] -rw-------. 1 boinc boinc 199010346 May  7 10:33 HITS.44506063._027415.pool.root.1
[2025-05-07 12:37:10] -rw-r--r--. 1 boinc boinc       530 May  7 10:33 boinc_task_state.xml
[2025-05-07 12:37:10] -rw-------. 1 boinc boinc      1021 May  7 10:34 memory_monitor_summary.json
[2025-05-07 12:37:10] -rw-------. 1 boinc boinc   1596741 May  7 10:34 agis_ddmendpoints.agis.ALL.json
[2025-05-07 12:37:10] -rw-------. 1 boinc boinc    427737 May  7 10:34 log.44506063._027415.job.log.tgz.1
[2025-05-07 12:37:10] -rw-------. 1 boinc boinc        95 May  7 10:36 pilot_heartbeat.json
[2025-05-07 12:37:10] -rw-------. 1 boinc boinc      7692 May  7 10:36 heartbeat.json
[2025-05-07 12:37:10] -rw-------. 1 boinc boinc      4725 May  7 10:36 pilotlog.txt
[2025-05-07 12:37:10] -rw-------. 1 boinc boinc   1467455 May  7 10:37 log.44506063._027415.job.log.1
[2025-05-07 12:37:10] -rw-------. 1 boinc boinc       357 May  7 10:37 output.list
[2025-05-07 12:37:10] -rw-r--r--. 1 boinc boinc       620 May  7 10:37 runtime_log
[2025-05-07 12:37:10] -rw-------. 1 boinc boinc   1914880 May  7 10:37 result.tar.gz
[2025-05-07 12:37:10] -rw-r--r--. 1 boinc boinc     11013 May  7 10:37 runtime_log.err
[2025-05-07 12:37:10] -rw-------. 1 boinc boinc       657 May  7 10:37 faeMDm6fdW7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmzLHLDmuwQ2nn.diag
[2025-05-07 12:37:10] -rw-r--r--. 1 boinc boinc      8192 May  7 12:37 boinc_mmap_file
[2025-05-07 12:37:10] -rw-r--r--. 1 boinc boinc        28 May  7 12:37 wrapper_checkpoint.txt
[2025-05-07 12:37:10] -rw-r--r--. 1 boinc boinc     20516 May  7 12:37 stderr.txt
[2025-05-07 12:37:10] HITS file was successfully produced:
[2025-05-07 12:37:10] -rw-------. 1 boinc boinc 199010346 May  7 10:33 shared/HITS.pool.root.1
[2025-05-07 12:37:10]  *** Contents of shared directory: ***
[2025-05-07 12:37:10] total 414140
[2025-05-07 12:37:10] -rw-r--r--. 2 boinc boinc 222616097 May  7 05:54 ATLAS.root_0
[2025-05-07 12:37:10] -rw-r--r--. 2 boinc boinc    508877 May  7 05:54 input.tar.gz
[2025-05-07 12:37:10] -rw-r--r--. 2 boinc boinc     17569 May  7 05:54 start_atlas.sh
[2025-05-07 12:37:10] -rw-------. 1 boinc boinc 199010346 May  7 10:33 HITS.pool.root.1
[2025-05-07 12:37:10] -rw-------. 1 boinc boinc   1914880 May  7 10:37 result.tar.gz
12:37:12 (16543): run_atlas exited; CPU time 61503.826217
12:37:12 (16543): called boinc_finish(0)

</stderr_txt>
]]>

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