Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-06 23:10:30 (13600): Detected: vboxwrapper 26206
2025-05-06 23:10:30 (13600): Detected: BOINC client v8.0.2
2025-05-06 23:10:31 (13600): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-05-06 23:10:31 (13600): Successfully copied 'init_data.xml' to the shared directory.
2025-05-06 23:10:32 (13600): Create VM. (boinc_ac00b689f9e4e012, slot#14)
2025-05-06 23:10:33 (13600): Setting Memory Size for VM. (4800MB)
2025-05-06 23:10:33 (13600): Setting CPU Count for VM. (8)
2025-05-06 23:10:33 (13600): Setting Chipset Options for VM.
2025-05-06 23:10:33 (13600): Setting Graphics Controller Options for VM.
2025-05-06 23:10:34 (13600): Setting Boot Options for VM.
2025-05-06 23:10:34 (13600): Setting Network Configuration for NAT.
2025-05-06 23:10:34 (13600): Enabling VM Network Access.
2025-05-06 23:10:34 (13600): Disabling USB Support for VM.
2025-05-06 23:10:35 (13600): Disabling COM Port Support for VM.
2025-05-06 23:10:35 (13600): Disabling LPT Port Support for VM.
2025-05-06 23:10:35 (13600): Disabling Audio Support for VM.
2025-05-06 23:10:35 (13600): Disabling Clipboard Support for VM.
2025-05-06 23:10:36 (13600): Disabling Drag and Drop Support for VM.
2025-05-06 23:10:36 (13600): Adding storage controller(s) to VM.
2025-05-06 23:10:36 (13600): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-06 23:10:39 (13600): Adding VirtualBox Guest Additions to VM.
2025-05-06 23:10:39 (13600): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-06 23:10:40 (13600): forwarding host port 63653 to guest port 80
2025-05-06 23:10:40 (13600): Enabling remote desktop for VM.
2025-05-06 23:10:40 (13600): Required extension pack not installed, remote desktop not enabled.
2025-05-06 23:10:40 (13600): Enabling shared directory for VM.
2025-05-06 23:10:41 (13600): Starting VM using VBoxManage interface. (boinc_ac00b689f9e4e012, slot#14)
2025-05-06 23:10:46 (13600): Successfully started VM. (PID = '43184')
2025-05-06 23:10:46 (13600): Reporting VM Process ID to BOINC.
2025-05-06 23:10:46 (13600): Guest Log: BIOS: VirtualBox 7.1.6
2025-05-06 23:10:46 (13600): Guest Log: CPUID EDX: 0x178bfbff
2025-05-06 23:10:46 (13600): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-06 23:10:46 (13600): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-06 23:10:46 (13600): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-06 23:10:46 (13600): Detected: Web Application Enabled (http://localhost:63653)
2025-05-06 23:10:46 (13600): Preference change detected
2025-05-06 23:10:46 (13600): Setting CPU throttle for VM. (90%)
2025-05-06 23:10:47 (13600): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-06 23:10:48 (13600): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-06 23:10:48 (13600): Guest Log: BIOS: Booting from Hard Disk...
2025-05-06 23:10:51 (13600): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-06 23:10:51 (13600): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-06 23:10:51 (13600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-06 23:10:56 (13600): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-06 23:10:57 (13600): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-06 23:11:06 (13600): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-06 23:11:06 (13600): Guest Log: 00:00:00.000277 main     Log opened 2025-05-06T23:11:04.061282000Z
2025-05-06 23:11:06 (13600): Guest Log: 00:00:00.000438 main     OS Product: Linux
2025-05-06 23:11:06 (13600): Guest Log: 00:00:00.000485 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-06 23:11:06 (13600): Guest Log: 00:00:00.000525 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-06 23:11:06 (13600): Guest Log: 00:00:00.000565 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-06 23:11:06 (13600): Guest Log: 00:00:00.000566 main     Process ID: 1399
2025-05-06 23:11:06 (13600): Guest Log: 00:00:00.000567 main     Package type: LINUX_64BITS_GENERIC
2025-05-06 23:11:06 (13600): Guest Log: 00:00:00.001282 main     5.2.32 r132073 started. Verbose level = 0
2025-05-06 23:11:06 (13600): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-06 23:11:06 (13600): Guest Log: [INFO] Mounting shared directory
2025-05-06 23:11:06 (13600): Guest Log: [INFO] Checking for init_data.xml
2025-05-06 23:11:16 (13600): Guest Log: 00:00:10.003343 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 916 389 000ns (GuestNow=1 746 565 876 147 464 000 ns GuestLast=1 746 573 064 063 853 000 ns fSetTimeLastLoop=true )
2025-05-06 23:11:19 (13600): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-06 23:11:19 (13600): Guest Log: [INFO] Detected branch: prod
2025-05-06 23:11:20 (13600): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-06 23:11:20 (13600): Guest Log: Copying input files
2025-05-06 23:11:21 (13600): Guest Log: Copied input files into RunAtlas.
2025-05-06 23:11:21 (13600): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-06 23:11:21 (13600): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-06 23:11:21 (13600): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-06 23:11:21 (13600): Guest Log: Further information can be found at the LHC@home message board.
2025-05-06 23:11:32 (13600): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-06 23:11:33 (13600): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-06 23:11:33 (13600): Guest Log: 2.6.3.0 1677 0 30192 145687 4 1 3117346 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-06 23:11:34 (13600): Guest Log: copied the webapp to /var/www
2025-05-06 23:11:34 (13600): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-06 23:11:34 (13600): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-06 23:11:35 (13600): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-06 23:11:35 (13600): Guest Log:  *** Starting ATLAS job. (PandaID=6635271969 taskID=44506063) ***
2025-05-06 23:18:25 (13600): VM state change detected. (old = 'running', new = 'paused')
2025-05-06 23:18:44 (13600): VM state change detected. (old = 'paused', new = 'running')
2025-05-06 23:19:15 (13600): VM state change detected. (old = 'running', new = 'paused')
2025-05-06 23:19:35 (13600): VM state change detected. (old = 'paused', new = 'running')
2025-05-06 23:20:35 (13600): VM state change detected. (old = 'running', new = 'paused')
2025-05-06 23:20:55 (13600): VM state change detected. (old = 'paused', new = 'running')
2025-05-06 23:23:07 (13600): VM state change detected. (old = 'running', new = 'paused')
2025-05-06 23:23:27 (13600): VM state change detected. (old = 'paused', new = 'running')
2025-05-06 23:26:07 (13600): VM state change detected. (old = 'running', new = 'paused')
2025-05-06 23:26:47 (13600): VM state change detected. (old = 'paused', new = 'running')
2025-05-06 23:27:57 (13600): VM state change detected. (old = 'running', new = 'paused')
2025-05-06 23:28:17 (13600): VM state change detected. (old = 'paused', new = 'running')
2025-05-06 23:41:19 (13600): VM state change detected. (old = 'running', new = 'paused')
2025-05-06 23:41:39 (13600): VM state change detected. (old = 'paused', new = 'running')
2025-05-06 23:45:20 (13600): VM state change detected. (old = 'running', new = 'paused')
2025-05-06 23:45:40 (13600): VM state change detected. (old = 'paused', new = 'running')
2025-05-06 23:46:30 (13600): VM state change detected. (old = 'running', new = 'paused')
2025-05-06 23:46:50 (13600): VM state change detected. (old = 'paused', new = 'running')
2025-05-07 00:54:28 (13600): Status Report: Elapsed Time: '6000.000000'
2025-05-07 00:54:28 (13600): Status Report: CPU Time: '34808.437500'
2025-05-07 01:39:03 (13600): Guest Log:  *** Job finished ***
2025-05-07 01:39:03 (13600): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:38,137 | INFO     | [payload] validate_post thread has finished
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:38,284 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:42,292 | INFO     | [data] queue_monitor thread has finished
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:43,108 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140238752077632)>', '<ExcThread(monitor, started 140238299051776)>']
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:43,126 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:43,126 | INFO     | [monitor] control thread has ended
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:48,114 | INFO     | all workflow threads have been joined
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:48,114 | INFO     | end of generic workflow (traces error code: 0)
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:48,114 | INFO     | traces error code: 0
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:48,115 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:48,235 [wrapper] ==== pilot stdout END ====
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:48,242 [wrapper] ==== wrapper stdout RESUME ====
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:48,248 [wrapper] pilotpid: 6032
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:48,256 [wrapper] Pilot exit status: 0
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:48,339 [wrapper] pandaids: 6635271969
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:48,375 [wrapper] cleanup supervisor_pilot  4006 6033
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:48,387 [wrapper] Test setup, not cleaning
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:48,394 [wrapper] apfmon messages muted
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:48,405 [wrapper] ==== wrapper stdout END ====
2025-05-07 01:39:03 (13600): Guest Log: 2025-05-06 23:35:48,415 [wrapper] ==== wrapper stderr END ====
2025-05-07 01:39:03 (13600): Guest Log:  *** Error codes and diagnostics ***
2025-05-07 01:39:03 (13600): Guest Log:     "exeErrorCode": 0,
2025-05-07 01:39:03 (13600): Guest Log:     "exeErrorDiag": "",
2025-05-07 01:39:03 (13600): Guest Log:     "pilotErrorCode": 0,
2025-05-07 01:39:03 (13600): Guest Log:     "pilotErrorDiag": "",
2025-05-07 01:39:03 (13600): Guest Log:  *** Listing of results directory ***
2025-05-07 01:39:03 (13600): Guest Log: total 196396
2025-05-07 01:39:03 (13600): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May  6 19:30 pilot3.tar.gz
2025-05-07 01:39:03 (13600): Guest Log: -rwx------. 1 atlas atlas     37140 May  6 19:37 runpilot2-wrapper.sh
2025-05-07 01:39:03 (13600): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May  6 19:37 queuedata.json
2025-05-07 01:39:03 (13600): Guest Log: -rwxr-xr-x. 1 atlas atlas     12245 May  6 21:11 init_data.xml
2025-05-07 01:39:03 (13600): Guest Log: -rwxr-xr-x. 1 atlas atlas    508880 May  6 21:11 input.tar.gz
2025-05-07 01:39:03 (13600): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May  6 21:11 start_atlas.sh
2025-05-07 01:39:03 (13600): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May  6 21:11 EVNT.44506061._001065.pool.root.1 -> /data/./ATLAS.root_0
2025-05-07 01:39:03 (13600): Guest Log: -rw-r--r--. 1 atlas atlas      2556 May  6 21:11 pandaJob.out
2025-05-07 01:39:03 (13600): Guest Log: -rw-------. 1 atlas atlas       424 May  6 21:11 setup.sh.local
2025-05-07 01:39:03 (13600): Guest Log: -rw-------. 1 atlas atlas    998316 May  6 21:12 agis_schedconf.cvmfs.json
2025-05-07 01:39:03 (13600): Guest Log: -rw-------. 1 atlas atlas   1596741 May  6 21:12 agis_ddmendpoints.agis.ALL.json
2025-05-07 01:39:03 (13600): Guest Log: drwx------. 4 atlas atlas      4096 May  6 21:13 pilot3
2025-05-07 01:39:03 (13600): Guest Log: -rw-------. 1 atlas atlas 195261103 May  6 23:34 HITS.44506063._026742.pool.root.1
2025-05-07 01:39:03 (13600): Guest Log: -rw-------. 1 atlas atlas        95 May  6 23:34 pilot_heartbeat.json
2025-05-07 01:39:03 (13600): Guest Log: -rw-------. 1 atlas atlas      1027 May  6 23:35 memory_monitor_summary.json
2025-05-07 01:39:03 (13600): Guest Log: -rw-------. 1 atlas atlas    321515 May  6 23:35 log.44506063._026742.job.log.tgz.1
2025-05-07 01:39:03 (13600): Guest Log: -rw-------. 1 atlas atlas      7682 May  6 23:35 heartbeat.json
2025-05-07 01:39:03 (13600): Guest Log: -rw-------. 1 atlas atlas      4413 May  6 23:35 pilotlog.txt
2025-05-07 01:39:03 (13600): Guest Log: -rw-------. 1 atlas atlas    711038 May  6 23:35 log.44506063._026742.job.log.1
2025-05-07 01:39:03 (13600): Guest Log: -rw-------. 1 atlas atlas       357 May  6 23:35 output.list
2025-05-07 01:39:03 (13600): Guest Log: -rw-r--r--. 1 atlas atlas       620 May  6 23:35 runtime_log
2025-05-07 01:39:03 (13600): Guest Log: -rw-------. 1 atlas atlas   1054720 May  6 23:35 result.tar.gz
2025-05-07 01:39:03 (13600): Guest Log: -rw-r--r--. 1 atlas atlas     10958 May  6 23:35 runtime_log.err
2025-05-07 01:39:03 (13600): Guest Log: -rw-------. 1 atlas atlas       664 May  6 23:35 Iu8MDmbHdW7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmnEHLDmRcnc5m.diag
2025-05-07 01:39:03 (13600): Guest Log: Looking for outputfile HITS.44506063._026742.pool.root.1
2025-05-07 01:39:03 (13600): Guest Log: HITS file was successfully produced
2025-05-07 01:39:03 (13600): Guest Log: -rw-------. 1 atlas atlas 195261103 May  6 23:34 /home/atlas/RunAtlas/HITS.44506063._026742.pool.root.1
2025-05-07 01:39:04 (13600): Guest Log: Successfully finished the ATLAS job!
2025-05-07 01:39:04 (13600): Guest Log: Copying the results back to the shared directory!
2025-05-07 01:39:05 (13600): Guest Log:  *** Contents of shared directory: ***
2025-05-07 01:39:05 (13600): Guest Log: total 410472
2025-05-07 01:39:05 (13600): Guest Log: -rwxrwxrwx. 1 root root 223455059 May  6 21:10 ATLAS.root_0
2025-05-07 01:39:05 (13600): Guest Log: -rwxrwxrwx. 1 root root 195261103 May  6  2025 HITS.pool.root.1
2025-05-07 01:39:05 (13600): Guest Log: -rwxrwxrwx. 1 root root     12245 May  6 21:10 init_data.xml
2025-05-07 01:39:05 (13600): Guest Log: -rwxrwxrwx. 1 root root    508880 May  6 21:10 input.tar.gz
2025-05-07 01:39:05 (13600): Guest Log: -rwxrwxrwx. 1 root root   1054720 May  6  2025 result.tar.gz
2025-05-07 01:39:05 (13600): Guest Log: -rwxrwxrwx. 1 root root     17569 May  6 21:10 start_atlas.sh
2025-05-07 01:39:05 (13600): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-07 01:39:05 (13600): VM Completion File Detected.
2025-05-07 01:39:05 (13600): Powering off VM.
2025-05-07 01:39:06 (13600): Successfully stopped VM.
2025-05-07 01:39:06 (13600): Deregistering VM. (boinc_ac00b689f9e4e012, slot#14)
2025-05-07 01:39:06 (13600): Removing network bandwidth throttle group from VM.
2025-05-07 01:39:06 (13600): Removing VM from VirtualBox.
01:39:12 (13600): called boinc_finish(0)

</stderr_txt>
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