Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-06 11:55:02 (1821197): Detected: vboxwrapper 26206
2025-05-06 11:55:02 (1821197): Detected: BOINC client v7.20.5
2025-05-06 11:55:02 (1821197): Detected: VirtualBox VboxManage Interface (Version: 7.0.12)
2025-05-06 11:55:02 (1821197): Successfully copied 'init_data.xml' to the shared directory.
2025-05-06 11:55:02 (1821197): Create VM. (boinc_6d2e56323eee8465, slot#5)
2025-05-06 11:55:03 (1821197): Setting Memory Size for VM. (4800MB)
2025-05-06 11:55:03 (1821197): Setting CPU Count for VM. (8)
2025-05-06 11:55:03 (1821197): Setting Chipset Options for VM.
2025-05-06 11:55:03 (1821197): Setting Graphics Controller Options for VM.
2025-05-06 11:55:03 (1821197): Setting Boot Options for VM.
2025-05-06 11:55:03 (1821197): Setting Network Configuration for NAT.
2025-05-06 11:55:04 (1821197): Enabling VM Network Access.
2025-05-06 11:55:04 (1821197): Disabling USB Support for VM.
2025-05-06 11:55:04 (1821197): Disabling COM Port Support for VM.
2025-05-06 11:55:04 (1821197): Disabling LPT Port Support for VM.
2025-05-06 11:55:04 (1821197): Disabling Audio Support for VM.
2025-05-06 11:55:04 (1821197): Disabling Clipboard Support for VM.
2025-05-06 11:55:04 (1821197): Disabling Drag and Drop Support for VM.
2025-05-06 11:55:04 (1821197): Adding storage controller(s) to VM.
2025-05-06 11:55:05 (1821197): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-06 11:55:07 (1821197): Adding VirtualBox Guest Additions to VM.
2025-05-06 11:55:07 (1821197): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-06 11:55:07 (1821197): forwarding host port 40261 to guest port 80
2025-05-06 11:55:07 (1821197): Enabling remote desktop for VM.
2025-05-06 11:55:07 (1821197): Required extension pack not installed, remote desktop not enabled.
2025-05-06 11:55:07 (1821197): Enabling shared directory for VM.
2025-05-06 11:55:08 (1821197): Starting VM using VBoxManage interface. (boinc_6d2e56323eee8465, slot#5)
2025-05-06 11:55:09 (1821197): Successfully started VM. (PID = '1821786')
2025-05-06 11:55:09 (1821197): Reporting VM Process ID to BOINC.
2025-05-06 11:55:09 (1821197): Guest Log: BIOS: VirtualBox 7.0.12
2025-05-06 11:55:09 (1821197): Guest Log: CPUID EDX: 0x178bfbff
2025-05-06 11:55:09 (1821197): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-06 11:55:09 (1821197): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-06 11:55:09 (1821197): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-06 11:55:09 (1821197): Detected: Web Application Enabled (http://localhost:40261)
2025-05-06 11:55:09 (1821197): Preference change detected
2025-05-06 11:55:09 (1821197): Setting CPU throttle for VM. (100%)
2025-05-06 11:55:09 (1821197): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-06 11:55:11 (1821197): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-06 11:55:11 (1821197): Guest Log: BIOS: Booting from Hard Disk...
2025-05-06 11:55:14 (1821197): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-06 11:55:14 (1821197): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-06 11:55:14 (1821197): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-06 11:55:22 (1821197): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-06 11:55:22 (1821197): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-06 11:55:55 (1821197): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-06 11:55:55 (1821197): Guest Log: 00:00:00.000183 main     Log opened 2025-05-06T15:55:53.284636000Z
2025-05-06 11:55:55 (1821197): Guest Log: 00:00:00.000307 main     OS Product: Linux
2025-05-06 11:55:55 (1821197): Guest Log: 00:00:00.000345 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-06 11:55:55 (1821197): Guest Log: 00:00:00.000378 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-06 11:55:55 (1821197): Guest Log: 00:00:00.000411 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-06 11:55:55 (1821197): Guest Log: 00:00:00.000412 main     Process ID: 1369
2025-05-06 11:55:55 (1821197): Guest Log: 00:00:00.000413 main     Package type: LINUX_64BITS_GENERIC
2025-05-06 11:55:55 (1821197): Guest Log: 00:00:00.001201 main     5.2.32 r132073 started. Verbose level = 0
2025-05-06 11:55:55 (1821197): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-06 11:55:55 (1821197): Guest Log: [INFO] Mounting shared directory
2025-05-06 11:55:55 (1821197): Guest Log: [INFO] Checking for init_data.xml
2025-05-06 11:56:01 (1821197): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-06 11:56:01 (1821197): Guest Log: [INFO] Detected branch: prod
2025-05-06 11:56:02 (1821197): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-06 11:56:02 (1821197): Guest Log: Copying input files
2025-05-06 11:56:03 (1821197): Guest Log: Copied input files into RunAtlas.
2025-05-06 11:56:03 (1821197): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-06 11:56:03 (1821197): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-06 11:56:03 (1821197): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-06 11:56:03 (1821197): Guest Log: Further information can be found at the LHC@home message board.
2025-05-06 11:56:11 (1821197): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-06 11:56:12 (1821197): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-06 11:56:12 (1821197): Guest Log: 2.6.3.0 1650 0 32176 145681 4 1 3117346 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-06 11:56:14 (1821197): Guest Log: copied the webapp to /var/www
2025-05-06 11:56:14 (1821197): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-06 11:56:14 (1821197): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-06 11:56:15 (1821197): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-06 11:56:15 (1821197): Guest Log:  *** Starting ATLAS job. (PandaID=6634572253 taskID=44506063) ***
2025-05-06 13:34:19 (1821197): Status Report: Elapsed Time: '6000.000000'
2025-05-06 13:34:19 (1821197): Status Report: CPU Time: '37946.180000'
2025-05-06 15:13:31 (1821197): Status Report: Elapsed Time: '12000.000000'
2025-05-06 15:13:31 (1821197): Status Report: CPU Time: '84617.170000'
2025-05-06 15:21:30 (1821197): Guest Log:  *** Job finished ***
2025-05-06 15:21:30 (1821197): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:17,675 | INFO     | [job] validate thread has finished
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:18,174 | INFO     | [data] copytool_out thread has finished
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:20,623 | INFO     | [data] queue_monitor thread has finished
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:21,835 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140038644197184)>', '<ExcThread(monitor, started 140038029416192)>']
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:22,136 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:22,137 | INFO     | [monitor] control thread has ended
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:26,838 | INFO     | all workflow threads have been joined
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:26,838 | INFO     | end of generic workflow (traces error code: 0)
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:26,838 | INFO     | traces error code: 0
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:26,839 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:27,017 [wrapper] ==== pilot stdout END ====
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:27,025 [wrapper] ==== wrapper stdout RESUME ====
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:27,034 [wrapper] pilotpid: 6003
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:27,044 [wrapper] Pilot exit status: 0
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:27,126 [wrapper] pandaids: 6634572253
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:27,189 [wrapper] cleanup supervisor_pilot 11351 6004
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:27,198 [wrapper] Test setup, not cleaning
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:27,206 [wrapper] apfmon messages muted
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:27,217 [wrapper] ==== wrapper stdout END ====
2025-05-06 15:21:30 (1821197): Guest Log: 2025-05-06 19:21:27,227 [wrapper] ==== wrapper stderr END ====
2025-05-06 15:21:30 (1821197): Guest Log:  *** Error codes and diagnostics ***
2025-05-06 15:21:30 (1821197): Guest Log:     "exeErrorCode": 0,
2025-05-06 15:21:30 (1821197): Guest Log:     "exeErrorDiag": "",
2025-05-06 15:21:30 (1821197): Guest Log:     "pilotErrorCode": 0,
2025-05-06 15:21:30 (1821197): Guest Log:     "pilotErrorDiag": "",
2025-05-06 15:21:30 (1821197): Guest Log:  *** Listing of results directory ***
2025-05-06 15:21:30 (1821197): Guest Log: total 202176
2025-05-06 15:21:30 (1821197): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May  6 00:54 pilot3.tar.gz
2025-05-06 15:21:30 (1821197): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May  6 00:57 queuedata.json
2025-05-06 15:21:30 (1821197): Guest Log: -rwx------. 1 atlas atlas     37140 May  6 00:58 runpilot2-wrapper.sh
2025-05-06 15:21:30 (1821197): Guest Log: -rw-r--r--. 1 atlas atlas    508876 May  6 15:56 input.tar.gz
2025-05-06 15:21:30 (1821197): Guest Log: -rw-r--r--. 1 atlas atlas      6239 May  6 15:56 init_data.xml
2025-05-06 15:21:30 (1821197): Guest Log: -rw-r--r--. 1 atlas atlas     17569 May  6 15:56 start_atlas.sh
2025-05-06 15:21:30 (1821197): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May  6 15:56 EVNT.44506061._000699.pool.root.1 -> /data/./ATLAS.root_0
2025-05-06 15:21:30 (1821197): Guest Log: -rw-r--r--. 1 atlas atlas      2557 May  6 15:56 pandaJob.out
2025-05-06 15:21:30 (1821197): Guest Log: -rw-------. 1 atlas atlas       424 May  6 15:56 setup.sh.local
2025-05-06 15:21:30 (1821197): Guest Log: -rw-------. 1 atlas atlas    998332 May  6 15:57 agis_schedconf.cvmfs.json
2025-05-06 15:21:30 (1821197): Guest Log: drwx------. 4 atlas atlas      4096 May  6 15:57 pilot3
2025-05-06 15:21:30 (1821197): Guest Log: -rw-------. 1 atlas atlas        95 May  6 19:20 pilot_heartbeat.json
2025-05-06 15:21:30 (1821197): Guest Log: -rw-------. 1 atlas atlas 200540455 May  6 19:20 HITS.44506063._017453.pool.root.1
2025-05-06 15:21:30 (1821197): Guest Log: -rw-------. 1 atlas atlas      1032 May  6 19:20 memory_monitor_summary.json
2025-05-06 15:21:30 (1821197): Guest Log: -rw-------. 1 atlas atlas   1596741 May  6 19:20 agis_ddmendpoints.agis.ALL.json
2025-05-06 15:21:30 (1821197): Guest Log: -rw-------. 1 atlas atlas    357154 May  6 19:20 log.44506063._017453.job.log.tgz.1
2025-05-06 15:21:30 (1821197): Guest Log: -rw-------. 1 atlas atlas      7726 May  6 19:21 heartbeat.json
2025-05-06 15:21:30 (1821197): Guest Log: -rw-------. 1 atlas atlas      4599 May  6 19:21 pilotlog.txt
2025-05-06 15:21:30 (1821197): Guest Log: -rw-------. 1 atlas atlas   1000693 May  6 19:21 log.44506063._017453.job.log.1
2025-05-06 15:21:30 (1821197): Guest Log: -rw-------. 1 atlas atlas       357 May  6 19:21 output.list
2025-05-06 15:21:30 (1821197): Guest Log: -rw-r--r--. 1 atlas atlas       620 May  6 19:21 runtime_log
2025-05-06 15:21:30 (1821197): Guest Log: -rw-------. 1 atlas atlas   1372160 May  6 19:21 result.tar.gz
2025-05-06 15:21:30 (1821197): Guest Log: -rw-r--r--. 1 atlas atlas     10957 May  6 19:21 runtime_log.err
2025-05-06 15:21:30 (1821197): Guest Log: -rw-------. 1 atlas atlas       663 May  6 19:21 E4ULDmGpLW7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmi12LDmaEIlDm.diag
2025-05-06 15:21:30 (1821197): Guest Log: Looking for outputfile HITS.44506063._017453.pool.root.1
2025-05-06 15:21:30 (1821197): Guest Log: HITS file was successfully produced
2025-05-06 15:21:30 (1821197): Guest Log: -rw-------. 1 atlas atlas 200540455 May  6 19:20 /home/atlas/RunAtlas/HITS.44506063._017453.pool.root.1
2025-05-06 15:21:30 (1821197): Guest Log: Successfully finished the ATLAS job!
2025-05-06 15:21:30 (1821197): Guest Log: Copying the results back to the shared directory!
2025-05-06 15:21:31 (1821197): Guest Log:  *** Contents of shared directory: ***
2025-05-06 15:21:31 (1821197): Guest Log: total 219616
2025-05-06 15:21:31 (1821197): Guest Log: -rw-r--r--. 1 root root 222966210 May  6 15:55 ATLAS.root_0
2025-05-06 15:21:31 (1821197): Guest Log: -rw-r--r--. 1 root root      6239 May  6 15:55 init_data.xml
2025-05-06 15:21:31 (1821197): Guest Log: -rw-r--r--. 1 root root    508876 May  6 15:55 input.tar.gz
2025-05-06 15:21:31 (1821197): Guest Log: -rw-r--r--. 1 root root   1372160 May  6 19:21 result.tar.gz
2025-05-06 15:21:31 (1821197): Guest Log: -rw-r--r--. 1 root root     17569 May  6 15:55 start_atlas.sh
2025-05-06 15:21:31 (1821197): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-06 15:21:31 (1821197): VM Completion File Detected.
2025-05-06 15:21:31 (1821197): Powering off VM.
2025-05-06 15:21:32 (1821197): Successfully stopped VM.
2025-05-06 15:21:32 (1821197): Deregistering VM. (boinc_6d2e56323eee8465, slot#5)
2025-05-06 15:21:32 (1821197): Removing network bandwidth throttle group from VM.
2025-05-06 15:21:32 (1821197): Removing VM from VirtualBox.
15:21:37 (1821197): called boinc_finish(0)

</stderr_txt>
]]>

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