Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-06 10:24:17 (59136): Detected: vboxwrapper 26206
2025-05-06 10:24:17 (59136): Detected: BOINC client v8.0.2
2025-05-06 10:24:17 (59136): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-05-06 10:24:18 (59136): Successfully copied 'init_data.xml' to the shared directory.
2025-05-06 10:24:18 (59136): Create VM. (boinc_8e7273e05f83c35a, slot#6)
2025-05-06 10:24:19 (59136): Setting Memory Size for VM. (4800MB)
2025-05-06 10:24:19 (59136): Setting CPU Count for VM. (8)
2025-05-06 10:24:19 (59136): Setting Chipset Options for VM.
2025-05-06 10:24:19 (59136): Setting Graphics Controller Options for VM.
2025-05-06 10:24:20 (59136): Setting Boot Options for VM.
2025-05-06 10:24:20 (59136): Setting Network Configuration for NAT.
2025-05-06 10:24:20 (59136): Enabling VM Network Access.
2025-05-06 10:24:21 (59136): Disabling USB Support for VM.
2025-05-06 10:24:21 (59136): Disabling COM Port Support for VM.
2025-05-06 10:24:21 (59136): Disabling LPT Port Support for VM.
2025-05-06 10:24:21 (59136): Disabling Audio Support for VM.
2025-05-06 10:24:22 (59136): Disabling Clipboard Support for VM.
2025-05-06 10:24:22 (59136): Disabling Drag and Drop Support for VM.
2025-05-06 10:24:22 (59136): Adding storage controller(s) to VM.
2025-05-06 10:24:22 (59136): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-06 10:24:23 (59136): Adding VirtualBox Guest Additions to VM.
2025-05-06 10:24:23 (59136): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-06 10:24:23 (59136): forwarding host port 52135 to guest port 80
2025-05-06 10:24:24 (59136): Enabling remote desktop for VM.
2025-05-06 10:24:24 (59136): Required extension pack not installed, remote desktop not enabled.
2025-05-06 10:24:24 (59136): Enabling shared directory for VM.
2025-05-06 10:24:24 (59136): Starting VM using VBoxManage interface. (boinc_8e7273e05f83c35a, slot#6)
2025-05-06 10:24:30 (59136): Successfully started VM. (PID = '22940')
2025-05-06 10:24:30 (59136): Reporting VM Process ID to BOINC.
2025-05-06 10:24:30 (59136): Guest Log: BIOS: VirtualBox 7.0.6
2025-05-06 10:24:30 (59136): Guest Log: CPUID EDX: 0x178bfbff
2025-05-06 10:24:30 (59136): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-06 10:24:30 (59136): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-06 10:24:30 (59136): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-06 10:24:30 (59136): Detected: Web Application Enabled (http://localhost:52135)
2025-05-06 10:24:30 (59136): Preference change detected
2025-05-06 10:24:30 (59136): Setting CPU throttle for VM. (100%)
2025-05-06 10:24:31 (59136): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-06 10:24:32 (59136): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-06 10:24:32 (59136): Guest Log: BIOS: Booting from Hard Disk...
2025-05-06 10:24:35 (59136): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-06 10:24:35 (59136): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-06 10:24:35 (59136): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-06 10:24:42 (59136): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-06 10:24:42 (59136): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-06 10:24:49 (59136): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-06 10:24:49 (59136): Guest Log: 00:00:00.000122 main     Log opened 2025-05-06T10:24:46.993239000Z
2025-05-06 10:24:49 (59136): Guest Log: 00:00:00.000227 main     OS Product: Linux
2025-05-06 10:24:49 (59136): Guest Log: 00:00:00.000265 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-06 10:24:49 (59136): Guest Log: 00:00:00.000293 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-06 10:24:49 (59136): Guest Log: 00:00:00.000318 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-06 10:24:49 (59136): Guest Log: 00:00:00.000318 main     Process ID: 1370
2025-05-06 10:24:49 (59136): Guest Log: 00:00:00.000319 main     Package type: LINUX_64BITS_GENERIC
2025-05-06 10:24:49 (59136): Guest Log: 00:00:00.001001 main     5.2.32 r132073 started. Verbose level = 0
2025-05-06 10:24:49 (59136): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-06 10:24:49 (59136): Guest Log: [INFO] Mounting shared directory
2025-05-06 10:24:49 (59136): Guest Log: [INFO] Checking for init_data.xml
2025-05-06 10:24:53 (59136): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-06 10:24:53 (59136): Guest Log: [INFO] Detected branch: prod
2025-05-06 10:24:53 (59136): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-06 10:24:53 (59136): Guest Log: Copying input files
2025-05-06 10:24:54 (59136): Guest Log: Copied input files into RunAtlas.
2025-05-06 10:24:54 (59136): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-06 10:24:54 (59136): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-06 10:24:54 (59136): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-06 10:24:54 (59136): Guest Log: Further information can be found at the LHC@home message board.
2025-05-06 10:24:59 (59136): Guest Log: 00:00:10.004983 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 412 310 532 000ns (GuestNow=1 746 541 499 306 291 000 ns GuestLast=1 746 527 086 995 759 000 ns fSetTimeLastLoop=true )
2025-05-06 10:25:03 (59136): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-06 10:25:03 (59136): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-06 10:25:03 (59136): Guest Log: 2.6.3.0 1650 0 29992 145678 4 1 3117346 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-06 10:25:04 (59136): Guest Log: copied the webapp to /var/www
2025-05-06 10:25:04 (59136): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-06 10:25:04 (59136): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-06 10:25:04 (59136): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-06 10:25:04 (59136): Guest Log:  *** Starting ATLAS job. (PandaID=6634922520 taskID=44506063) ***
2025-05-06 11:50:14 (59136): Guest Log:  *** Job finished ***
2025-05-06 11:50:14 (59136): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:03,059 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:04,063 | INFO     | [job] queue monitor thread has finished
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:06,643 | INFO     | [data] queue_monitor thread has finished
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:08,714 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140103014905664)>', '<ExcThread(monitor, started 140102403602176)>']
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:09,361 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:09,361 | INFO     | [monitor] control thread has ended
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:13,825 | INFO     | all workflow threads have been joined
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:13,825 | INFO     | end of generic workflow (traces error code: 0)
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:13,825 | INFO     | traces error code: 0
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:13,825 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:13,894 [wrapper] ==== pilot stdout END ====
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:13,899 [wrapper] ==== wrapper stdout RESUME ====
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:13,904 [wrapper] pilotpid: 6006
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:13,909 [wrapper] Pilot exit status: 0
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:14,084 [wrapper] pandaids: 6634922520
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:14,120 [wrapper] cleanup supervisor_pilot  1930 6007
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:14,128 [wrapper] Test setup, not cleaning
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:14,133 [wrapper] apfmon messages muted
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:14,137 [wrapper] ==== wrapper stdout END ====
2025-05-06 11:50:14 (59136): Guest Log: 2025-05-06 15:50:14,143 [wrapper] ==== wrapper stderr END ====
2025-05-06 11:50:14 (59136): Guest Log:  *** Error codes and diagnostics ***
2025-05-06 11:50:14 (59136): Guest Log:     "exeErrorCode": 0,
2025-05-06 11:50:14 (59136): Guest Log:     "exeErrorDiag": "",
2025-05-06 11:50:14 (59136): Guest Log:     "pilotErrorCode": 0,
2025-05-06 11:50:14 (59136): Guest Log:     "pilotErrorDiag": "",
2025-05-06 11:50:14 (59136): Guest Log:  *** Listing of results directory ***
2025-05-06 11:50:14 (59136): Guest Log: total 202104
2025-05-06 11:50:14 (59136): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May  6 09:31 pilot3.tar.gz
2025-05-06 11:50:14 (59136): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May  6 09:38 queuedata.json
2025-05-06 11:50:14 (59136): Guest Log: -rwx------. 1 atlas atlas     37140 May  6 09:39 runpilot2-wrapper.sh
2025-05-06 11:50:14 (59136): Guest Log: -rwxr-xr-x. 1 atlas atlas      9112 May  6 14:24 init_data.xml
2025-05-06 11:50:14 (59136): Guest Log: -rwxr-xr-x. 1 atlas atlas    508879 May  6 14:24 input.tar.gz
2025-05-06 11:50:14 (59136): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May  6 14:24 start_atlas.sh
2025-05-06 11:50:14 (59136): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May  6 14:24 EVNT.44506061._000895.pool.root.1 -> /data/./ATLAS.root_0
2025-05-06 11:50:14 (59136): Guest Log: -rw-r--r--. 1 atlas atlas      2556 May  6 14:25 pandaJob.out
2025-05-06 11:50:14 (59136): Guest Log: -rw-------. 1 atlas atlas       424 May  6 14:25 setup.sh.local
2025-05-06 11:50:14 (59136): Guest Log: -rw-------. 1 atlas atlas    998316 May  6 14:26 agis_schedconf.cvmfs.json
2025-05-06 11:50:14 (59136): Guest Log: -rw-------. 1 atlas atlas   1596741 May  6 14:26 agis_ddmendpoints.agis.ALL.json
2025-05-06 11:50:14 (59136): Guest Log: drwx------. 4 atlas atlas      4096 May  6 14:26 pilot3
2025-05-06 11:50:14 (59136): Guest Log: -rw-------. 1 atlas atlas 201680684 May  6 15:49 HITS.44506063._022417.pool.root.1
2025-05-06 11:50:14 (59136): Guest Log: -rw-------. 1 atlas atlas        95 May  6 15:49 pilot_heartbeat.json
2025-05-06 11:50:14 (59136): Guest Log: -rw-------. 1 atlas atlas      1037 May  6 15:49 memory_monitor_summary.json
2025-05-06 11:50:14 (59136): Guest Log: -rw-------. 1 atlas atlas    303980 May  6 15:49 log.44506063._022417.job.log.tgz.1
2025-05-06 11:50:14 (59136): Guest Log: -rw-------. 1 atlas atlas      7750 May  6 15:49 heartbeat.json
2025-05-06 11:50:14 (59136): Guest Log: -rw-------. 1 atlas atlas      4536 May  6 15:50 pilotlog.txt
2025-05-06 11:50:14 (59136): Guest Log: -rw-------. 1 atlas atlas    440407 May  6 15:50 log.44506063._022417.job.log.1
2025-05-06 11:50:14 (59136): Guest Log: -rw-------. 1 atlas atlas       357 May  6 15:50 output.list
2025-05-06 11:50:14 (59136): Guest Log: -rw-r--r--. 1 atlas atlas       620 May  6 15:50 runtime_log
2025-05-06 11:50:14 (59136): Guest Log: -rw-------. 1 atlas atlas    768000 May  6 15:50 result.tar.gz
2025-05-06 11:50:14 (59136): Guest Log: -rw-r--r--. 1 atlas atlas     11004 May  6 15:50 runtime_log.err
2025-05-06 11:50:14 (59136): Guest Log: -rw-------. 1 atlas atlas       670 May  6 15:50 qIcNDmpwTW7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmj03LDmGL9DJm.diag
2025-05-06 11:50:14 (59136): Guest Log: Looking for outputfile HITS.44506063._022417.pool.root.1
2025-05-06 11:50:14 (59136): Guest Log: HITS file was successfully produced
2025-05-06 11:50:14 (59136): Guest Log: -rw-------. 1 atlas atlas 201680684 May  6 15:49 /home/atlas/RunAtlas/HITS.44506063._022417.pool.root.1
2025-05-06 11:50:16 (59136): Guest Log: Successfully finished the ATLAS job!
2025-05-06 11:50:16 (59136): Guest Log: Copying the results back to the shared directory!
2025-05-06 11:50:16 (59136): Guest Log:  *** Contents of shared directory: ***
2025-05-06 11:50:16 (59136): Guest Log: total 417888
2025-05-06 11:50:16 (59136): Guest Log: -rwxrwxrwx. 1 root root 224917942 May  6 14:24 ATLAS.root_0
2025-05-06 11:50:16 (59136): Guest Log: -rwxrwxrwx. 1 root root 201680684 May  6 15:50 HITS.pool.root.1
2025-05-06 11:50:16 (59136): Guest Log: -rwxrwxrwx. 1 root root      9112 May  6 14:24 init_data.xml
2025-05-06 11:50:16 (59136): Guest Log: -rwxrwxrwx. 1 root root    508879 May  6 12:40 input.tar.gz
2025-05-06 11:50:16 (59136): Guest Log: -rwxrwxrwx. 1 root root    768000 May  6 15:50 result.tar.gz
2025-05-06 11:50:16 (59136): Guest Log: -rwxrwxrwx. 1 root root     17569 May  6 12:40 start_atlas.sh
2025-05-06 11:50:16 (59136): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-06 11:50:16 (59136): VM Completion File Detected.
2025-05-06 11:50:16 (59136): Powering off VM.
2025-05-06 11:50:17 (59136): Successfully stopped VM.
2025-05-06 11:50:17 (59136): Deregistering VM. (boinc_8e7273e05f83c35a, slot#6)
2025-05-06 11:50:17 (59136): Removing network bandwidth throttle group from VM.
2025-05-06 11:50:17 (59136): Removing VM from VirtualBox.
11:50:22 (59136): called boinc_finish(0)

</stderr_txt>
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