Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-06 07:28:25 (6668): Detected: vboxwrapper 26206
2025-05-06 07:28:25 (6668): Detected: BOINC client v8.0.4
2025-05-06 07:28:26 (6668): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-05-06 07:28:26 (6668): Successfully copied 'init_data.xml' to the shared directory.
2025-05-06 07:28:26 (6668): Create VM. (boinc_926d055515e62b3f, slot#2)
2025-05-06 07:28:27 (6668): Setting Memory Size for VM. (4400MB)
2025-05-06 07:28:27 (6668): Setting CPU Count for VM. (4)
2025-05-06 07:28:28 (6668): Setting Chipset Options for VM.
2025-05-06 07:28:28 (6668): Setting Graphics Controller Options for VM.
2025-05-06 07:28:28 (6668): Setting Boot Options for VM.
2025-05-06 07:28:28 (6668): Setting Network Configuration for NAT.
2025-05-06 07:28:29 (6668): Enabling VM Network Access.
2025-05-06 07:28:29 (6668): Disabling USB Support for VM.
2025-05-06 07:28:29 (6668): Disabling COM Port Support for VM.
2025-05-06 07:28:29 (6668): Disabling LPT Port Support for VM.
2025-05-06 07:28:30 (6668): Disabling Audio Support for VM.
2025-05-06 07:28:30 (6668): Disabling Clipboard Support for VM.
2025-05-06 07:28:30 (6668): Disabling Drag and Drop Support for VM.
2025-05-06 07:28:30 (6668): Adding storage controller(s) to VM.
2025-05-06 07:28:31 (6668): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-06 07:28:31 (6668): Adding VirtualBox Guest Additions to VM.
2025-05-06 07:28:31 (6668): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-06 07:28:32 (6668): forwarding host port 65392 to guest port 80
2025-05-06 07:28:32 (6668): Enabling remote desktop for VM.
2025-05-06 07:28:32 (6668): Required extension pack not installed, remote desktop not enabled.
2025-05-06 07:28:32 (6668): Enabling shared directory for VM.
2025-05-06 07:28:33 (6668): Starting VM using VBoxManage interface. (boinc_926d055515e62b3f, slot#2)
2025-05-06 07:28:38 (6668): Successfully started VM. (PID = '5020')
2025-05-06 07:28:38 (6668): Reporting VM Process ID to BOINC.
2025-05-06 07:28:38 (6668): Guest Log: BIOS: VirtualBox 7.0.6
2025-05-06 07:28:38 (6668): Guest Log: CPUID EDX: 0x178bfbff
2025-05-06 07:28:38 (6668): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-06 07:28:38 (6668): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-06 07:28:38 (6668): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-06 07:28:38 (6668): Detected: Web Application Enabled (http://localhost:65392)
2025-05-06 07:28:38 (6668): Preference change detected
2025-05-06 07:28:38 (6668): Setting CPU throttle for VM. (80%)
2025-05-06 07:28:38 (6668): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-06 07:28:40 (6668): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-06 07:28:40 (6668): Guest Log: BIOS: Booting from Hard Disk...
2025-05-06 07:28:43 (6668): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-06 07:28:43 (6668): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-06 07:28:43 (6668): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-06 07:28:53 (6668): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-06 07:28:53 (6668): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-06 07:29:08 (6668): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-06 07:29:08 (6668): Guest Log: 00:00:00.000198 main     Log opened 2025-05-06T07:29:07.862982000Z
2025-05-06 07:29:08 (6668): Guest Log: 00:00:00.000357 main     OS Product: Linux
2025-05-06 07:29:08 (6668): Guest Log: 00:00:00.000402 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-06 07:29:08 (6668): Guest Log: 00:00:00.000484 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-06 07:29:08 (6668): Guest Log: 00:00:00.000520 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-06 07:29:08 (6668): Guest Log: 00:00:00.000521 main     Process ID: 1320
2025-05-06 07:29:08 (6668): Guest Log: 00:00:00.000522 main     Package type: LINUX_64BITS_GENERIC
2025-05-06 07:29:08 (6668): Guest Log: 00:00:00.002187 main     5.2.32 r132073 started. Verbose level = 0
2025-05-06 07:29:08 (6668): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-06 07:29:08 (6668): Guest Log: [INFO] Mounting shared directory
2025-05-06 07:29:09 (6668): Guest Log: [INFO] Checking for init_data.xml
2025-05-06 07:29:12 (6668): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-06 07:29:12 (6668): Guest Log: [INFO] Detected branch: prod
2025-05-06 07:29:13 (6668): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-06 07:29:13 (6668): Guest Log: Copying input files
2025-05-06 07:29:15 (6668): Guest Log: Copied input files into RunAtlas.
2025-05-06 07:29:15 (6668): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-06 07:29:15 (6668): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-06 07:29:15 (6668): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-06 07:29:15 (6668): Guest Log: Further information can be found at the LHC@home message board.
2025-05-06 07:29:18 (6668): Guest Log: 00:00:10.029780 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 410 602 284 000ns (GuestNow=1 746 530 958 482 893 000 ns GuestLast=1 746 516 547 880 609 000 ns fSetTimeLastLoop=true )
2025-05-06 07:29:24 (6668): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-06 07:29:24 (6668): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-06 07:29:24 (6668): Guest Log: 2.6.3.0 1598 0 30132 145675 4 1 3117346 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-06 07:29:28 (6668): Guest Log: copied the webapp to /var/www
2025-05-06 07:29:28 (6668): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-06 07:29:28 (6668): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-06 07:29:28 (6668): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-06 07:29:28 (6668): Guest Log:  *** Starting ATLAS job. (PandaID=6634040397 taskID=44506063) ***
2025-05-06 09:11:21 (6668): Status Report: Elapsed Time: '6000.021297'
2025-05-06 09:11:21 (6668): Status Report: CPU Time: '11329.968750'
2025-05-06 10:55:32 (6668): Status Report: Elapsed Time: '12000.148478'
2025-05-06 10:55:32 (6668): Status Report: CPU Time: '24530.640625'
2025-05-06 12:39:11 (6668): Status Report: Elapsed Time: '18000.148478'
2025-05-06 12:39:11 (6668): Status Report: CPU Time: '38061.281250'
2025-05-06 13:23:13 (6668): Guest Log:  *** Job finished ***
2025-05-06 13:23:13 (6668): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:03,751 | INFO     | [data] copytool_out thread has finished
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:04,757 | INFO     | [job] queue monitor thread has finished
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:04,818 | INFO     | [data] queue_monitor thread has finished
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:05,527 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140328090158912)>', '<ExcThread(monitor, started 140327352514304)>']
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:05,996 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:05,997 | INFO     | [monitor] control thread has ended
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:10,540 | INFO     | all workflow threads have been joined
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:10,540 | INFO     | end of generic workflow (traces error code: 0)
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:10,540 | INFO     | traces error code: 0
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:10,541 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:10,772 [wrapper] ==== pilot stdout END ====
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:10,842 [wrapper] ==== wrapper stdout RESUME ====
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:10,922 [wrapper] pilotpid: 5937
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:10,977 [wrapper] Pilot exit status: 0
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:11,263 [wrapper] pandaids: 6634040397
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:11,740 [wrapper] cleanup supervisor_pilot 20935 5938
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:11,776 [wrapper] Test setup, not cleaning
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:11,837 [wrapper] apfmon messages muted
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:11,887 [wrapper] ==== wrapper stdout END ====
2025-05-06 13:23:13 (6668): Guest Log: 2025-05-06 17:23:11,951 [wrapper] ==== wrapper stderr END ====
2025-05-06 13:23:13 (6668): Guest Log:  *** Error codes and diagnostics ***
2025-05-06 13:23:13 (6668): Guest Log:     "exeErrorCode": 0,
2025-05-06 13:23:13 (6668): Guest Log:     "exeErrorDiag": "",
2025-05-06 13:23:13 (6668): Guest Log:     "pilotErrorCode": 0,
2025-05-06 13:23:13 (6668): Guest Log:     "pilotErrorDiag": "",
2025-05-06 13:23:13 (6668): Guest Log:  *** Listing of results directory ***
2025-05-06 13:23:13 (6668): Guest Log: total 207892
2025-05-06 13:23:13 (6668): Guest Log: -rwx------. 1 atlas atlas     37140 May  5 05:17 runpilot2-wrapper.sh
2025-05-06 13:23:13 (6668): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May  5 05:18 pilot3.tar.gz
2025-05-06 13:23:13 (6668): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May  5 05:19 queuedata.json
2025-05-06 13:23:13 (6668): Guest Log: -rwxr-xr-x. 1 atlas atlas     11034 May  6 11:29 init_data.xml
2025-05-06 13:23:13 (6668): Guest Log: -rwxr-xr-x. 1 atlas atlas    508877 May  6 11:29 input.tar.gz
2025-05-06 13:23:13 (6668): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May  6 11:29 start_atlas.sh
2025-05-06 13:23:13 (6668): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May  6 11:29 EVNT.44506061._000055.pool.root.1 -> /data/./ATLAS.root_0
2025-05-06 13:23:13 (6668): Guest Log: -rw-r--r--. 1 atlas atlas      2555 May  6 11:29 pandaJob.out
2025-05-06 13:23:13 (6668): Guest Log: -rw-------. 1 atlas atlas       424 May  6 11:29 setup.sh.local
2025-05-06 13:23:13 (6668): Guest Log: -rw-------. 1 atlas atlas    998300 May  6 11:31 agis_schedconf.cvmfs.json
2025-05-06 13:23:13 (6668): Guest Log: drwx------. 4 atlas atlas      4096 May  6 11:31 pilot3
2025-05-06 13:23:13 (6668): Guest Log: -rw-------. 1 atlas atlas 205348298 May  6 17:20 HITS.44506063._001375.pool.root.1
2025-05-06 13:23:13 (6668): Guest Log: -rw-------. 1 atlas atlas      1027 May  6 17:21 memory_monitor_summary.json
2025-05-06 13:23:13 (6668): Guest Log: -rw-------. 1 atlas atlas   1596741 May  6 17:21 agis_ddmendpoints.agis.ALL.json
2025-05-06 13:23:13 (6668): Guest Log: -rw-------. 1 atlas atlas    374718 May  6 17:21 log.44506063._001375.job.log.tgz.1
2025-05-06 13:23:13 (6668): Guest Log: -rw-------. 1 atlas atlas        95 May  6 17:22 pilot_heartbeat.json
2025-05-06 13:23:13 (6668): Guest Log: -rw-------. 1 atlas atlas      7714 May  6 17:22 heartbeat.json
2025-05-06 13:23:13 (6668): Guest Log: -rw-------. 1 atlas atlas      4722 May  6 17:23 pilotlog.txt
2025-05-06 13:23:13 (6668): Guest Log: -rw-------. 1 atlas atlas   1501590 May  6 17:23 log.44506063._001375.job.log.1
2025-05-06 13:23:13 (6668): Guest Log: -rw-------. 1 atlas atlas       357 May  6 17:23 output.list
2025-05-06 13:23:13 (6668): Guest Log: -rw-r--r--. 1 atlas atlas       620 May  6 17:23 runtime_log
2025-05-06 13:23:13 (6668): Guest Log: -rw-------. 1 atlas atlas   1894400 May  6 17:23 result.tar.gz
2025-05-06 13:23:13 (6668): Guest Log: -rw-r--r--. 1 atlas atlas     10906 May  6 17:23 runtime_log.err
2025-05-06 13:23:13 (6668): Guest Log: -rw-------. 1 atlas atlas       647 May  6 17:23 775KDm7N3V7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmd5zLDmiiKbOo.diag
2025-05-06 13:23:13 (6668): Guest Log: Looking for outputfile HITS.44506063._001375.pool.root.1
2025-05-06 13:23:13 (6668): Guest Log: HITS file was successfully produced
2025-05-06 13:23:13 (6668): Guest Log: -rw-------. 1 atlas atlas 205348298 May  6 17:20 /home/atlas/RunAtlas/HITS.44506063._001375.pool.root.1
2025-05-06 13:23:16 (6668): Guest Log: Successfully finished the ATLAS job!
2025-05-06 13:23:16 (6668): Guest Log: Copying the results back to the shared directory!
2025-05-06 13:23:17 (6668): Guest Log:  *** Contents of shared directory: ***
2025-05-06 13:23:17 (6668): Guest Log: total 423936
2025-05-06 13:23:17 (6668): Guest Log: -rwxrwxrwx. 1 root root 226317542 May  6 11:28 ATLAS.root_0
2025-05-06 13:23:17 (6668): Guest Log: -rwxrwxrwx. 1 root root 205348298 May  6 17:23 HITS.pool.root.1
2025-05-06 13:23:17 (6668): Guest Log: -rwxrwxrwx. 1 root root     11034 May  6 11:28 init_data.xml
2025-05-06 13:23:17 (6668): Guest Log: -rwxrwxrwx. 1 root root    508877 May  6 11:28 input.tar.gz
2025-05-06 13:23:17 (6668): Guest Log: -rwxrwxrwx. 1 root root   1894400 May  6 17:23 result.tar.gz
2025-05-06 13:23:17 (6668): Guest Log: -rwxrwxrwx. 1 root root     17569 May  6 11:28 start_atlas.sh
2025-05-06 13:23:17 (6668): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-06 13:23:17 (6668): VM Completion File Detected.
2025-05-06 13:23:17 (6668): Powering off VM.
2025-05-06 13:23:18 (6668): Successfully stopped VM.
2025-05-06 13:23:18 (6668): Deregistering VM. (boinc_926d055515e62b3f, slot#2)
2025-05-06 13:23:18 (6668): Removing network bandwidth throttle group from VM.
2025-05-06 13:23:18 (6668): Removing VM from VirtualBox.
13:23:24 (6668): called boinc_finish(0)

</stderr_txt>
]]>

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