Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-06 18:32:30 (7316): Detected: vboxwrapper 26206
2025-05-06 18:32:30 (7316): Detected: BOINC client v8.0.2
2025-05-06 18:32:31 (7316): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-05-06 18:32:31 (7316): Successfully copied 'init_data.xml' to the shared directory.
2025-05-06 18:32:32 (7316): Create VM. (boinc_c1763d66142b2538, slot#0)
2025-05-06 18:32:33 (7316): Setting Memory Size for VM. (4800MB)
2025-05-06 18:32:33 (7316): Setting CPU Count for VM. (8)
2025-05-06 18:32:33 (7316): Setting Chipset Options for VM.
2025-05-06 18:32:33 (7316): Setting Graphics Controller Options for VM.
2025-05-06 18:32:34 (7316): Setting Boot Options for VM.
2025-05-06 18:32:34 (7316): Setting Network Configuration for NAT.
2025-05-06 18:32:34 (7316): Enabling VM Network Access.
2025-05-06 18:32:34 (7316): Disabling USB Support for VM.
2025-05-06 18:32:35 (7316): Disabling COM Port Support for VM.
2025-05-06 18:32:35 (7316): Disabling LPT Port Support for VM.
2025-05-06 18:32:35 (7316): Disabling Audio Support for VM.
2025-05-06 18:32:36 (7316): Disabling Clipboard Support for VM.
2025-05-06 18:32:36 (7316): Disabling Drag and Drop Support for VM.
2025-05-06 18:32:36 (7316): Adding storage controller(s) to VM.
2025-05-06 18:32:36 (7316): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-06 18:32:39 (7316): Adding VirtualBox Guest Additions to VM.
2025-05-06 18:32:40 (7316): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-06 18:32:40 (7316): forwarding host port 49981 to guest port 80
2025-05-06 18:32:40 (7316): Enabling remote desktop for VM.
2025-05-06 18:32:41 (7316): Enabling shared directory for VM.
2025-05-06 18:32:41 (7316): Starting VM using VBoxManage interface. (boinc_c1763d66142b2538, slot#0)
2025-05-06 18:32:48 (7316): Successfully started VM. (PID = '11836')
2025-05-06 18:32:48 (7316): Reporting VM Process ID to BOINC.
2025-05-06 18:32:48 (7316): Guest Log: BIOS: VirtualBox 7.0.22
2025-05-06 18:32:48 (7316): Guest Log: CPUID EDX: 0x178bfbff
2025-05-06 18:32:48 (7316): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-06 18:32:48 (7316): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-06 18:32:48 (7316): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-06 18:32:48 (7316): Detected: Web Application Enabled (http://localhost:49981)
2025-05-06 18:32:48 (7316): Detected: Remote Desktop Enabled (localhost:49982)
2025-05-06 18:32:48 (7316): Preference change detected
2025-05-06 18:32:48 (7316): Setting CPU throttle for VM. (75%)
2025-05-06 18:32:49 (7316): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-06 18:32:50 (7316): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-06 18:32:50 (7316): Guest Log: BIOS: Booting from Hard Disk...
2025-05-06 18:32:54 (7316): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-06 18:32:54 (7316): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-06 18:32:54 (7316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-06 18:33:04 (7316): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-06 18:33:04 (7316): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-06 18:33:17 (7316): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-06 18:33:17 (7316): Guest Log: 00:00:00.000431 main     Log opened 2025-05-06T18:33:16.037611000Z
2025-05-06 18:33:17 (7316): Guest Log: 00:00:00.000707 main     OS Product: Linux
2025-05-06 18:33:17 (7316): Guest Log: 00:00:00.000796 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-06 18:33:17 (7316): Guest Log: 00:00:00.000873 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-06 18:33:17 (7316): Guest Log: 00:00:00.000949 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-06 18:33:17 (7316): Guest Log: 00:00:00.000952 main     Process ID: 1370
2025-05-06 18:33:17 (7316): Guest Log: 00:00:00.000954 main     Package type: LINUX_64BITS_GENERIC
2025-05-06 18:33:17 (7316): Guest Log: 00:00:00.003323 main     5.2.32 r132073 started. Verbose level = 0
2025-05-06 18:33:18 (7316): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-06 18:33:18 (7316): Guest Log: [INFO] Mounting shared directory
2025-05-06 18:33:18 (7316): Guest Log: [INFO] Checking for init_data.xml
2025-05-06 18:33:22 (7316): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-06 18:33:22 (7316): Guest Log: [INFO] Detected branch: prod
2025-05-06 18:33:23 (7316): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-06 18:33:23 (7316): Guest Log: Copying input files
2025-05-06 18:33:25 (7316): Guest Log: Copied input files into RunAtlas.
2025-05-06 18:33:26 (7316): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-06 18:33:26 (7316): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-06 18:33:26 (7316): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-06 18:33:26 (7316): Guest Log: Further information can be found at the LHC@home message board.
2025-05-06 18:33:27 (7316): Guest Log: 00:00:10.051595 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 863 250 000ns (GuestNow=1 746 570 807 908 495 000 ns GuestLast=1 746 556 396 045 245 000 ns fSetTimeLastLoop=true )
2025-05-06 18:33:34 (7316): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-06 18:33:35 (7316): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-06 18:33:35 (7316): Guest Log: 2.6.3.0 1647 0 30228 145691 4 1 3117346 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-06 18:33:36 (7316): Guest Log: copied the webapp to /var/www
2025-05-06 18:33:36 (7316): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-06 18:33:36 (7316): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-06 18:33:36 (7316): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-06 18:33:36 (7316): Guest Log:  *** Starting ATLAS job. (PandaID=6634726154 taskID=44506063) ***
2025-05-06 20:13:46 (7316): Status Report: Elapsed Time: '6000.000000'
2025-05-06 20:13:46 (7316): Status Report: CPU Time: '26834.031250'
2025-05-06 21:54:19 (7316): Status Report: Elapsed Time: '12000.000000'
2025-05-06 21:54:19 (7316): Status Report: CPU Time: '62861.812500'
2025-05-06 23:34:41 (7316): Status Report: Elapsed Time: '18000.000000'
2025-05-06 23:34:41 (7316): Status Report: CPU Time: '98821.921875'
2025-05-07 00:12:59 (7316): Guest Log:  *** Job finished ***
2025-05-07 00:12:59 (7316): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:47,072 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:48,075 | INFO     | [job] queue monitor thread has finished
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:49,198 | INFO     | [data] queue_monitor thread has finished
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:51,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139893321381696)>', '<ExcThread(monitor, started 139892487075584)>']
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:51,310 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:51,310 | INFO     | [monitor] control thread has ended
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:56,234 | INFO     | all workflow threads have been joined
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:56,234 | INFO     | end of generic workflow (traces error code: 0)
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:56,235 | INFO     | traces error code: 0
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:56,235 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:56,438 [wrapper] ==== pilot stdout END ====
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:56,449 [wrapper] ==== wrapper stdout RESUME ====
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:56,461 [wrapper] pilotpid: 6020
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:56,473 [wrapper] Pilot exit status: 0
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:56,616 [wrapper] pandaids: 6634726154
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:56,721 [wrapper] cleanup supervisor_pilot 20924 6021
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:56,727 [wrapper] Test setup, not cleaning
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:56,732 [wrapper] apfmon messages muted
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:56,738 [wrapper] ==== wrapper stdout END ====
2025-05-07 00:12:59 (7316): Guest Log: 2025-05-07 04:12:56,743 [wrapper] ==== wrapper stderr END ====
2025-05-07 00:12:59 (7316): Guest Log:  *** Error codes and diagnostics ***
2025-05-07 00:12:59 (7316): Guest Log:     "exeErrorCode": 0,
2025-05-07 00:12:59 (7316): Guest Log:     "exeErrorDiag": "",
2025-05-07 00:12:59 (7316): Guest Log:     "pilotErrorCode": 0,
2025-05-07 00:12:59 (7316): Guest Log:     "pilotErrorDiag": "",
2025-05-07 00:12:59 (7316): Guest Log:  *** Listing of results directory ***
2025-05-07 00:12:59 (7316): Guest Log: total 197052
2025-05-07 00:12:59 (7316): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May  6 04:46 pilot3.tar.gz
2025-05-07 00:12:59 (7316): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May  6 04:56 queuedata.json
2025-05-07 00:12:59 (7316): Guest Log: -rwx------. 1 atlas atlas     37140 May  6 04:57 runpilot2-wrapper.sh
2025-05-07 00:12:59 (7316): Guest Log: -rwxr-xr-x. 1 atlas atlas      8444 May  6 22:33 init_data.xml
2025-05-07 00:12:59 (7316): Guest Log: -rwxr-xr-x. 1 atlas atlas    508878 May  6 22:33 input.tar.gz
2025-05-07 00:12:59 (7316): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May  6 22:33 start_atlas.sh
2025-05-07 00:12:59 (7316): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May  6 22:33 EVNT.44506061._000785.pool.root.1 -> /data/./ATLAS.root_0
2025-05-07 00:12:59 (7316): Guest Log: -rw-r--r--. 1 atlas atlas      2555 May  6 22:33 pandaJob.out
2025-05-07 00:12:59 (7316): Guest Log: -rw-------. 1 atlas atlas       424 May  6 22:33 setup.sh.local
2025-05-07 00:12:59 (7316): Guest Log: -rw-------. 1 atlas atlas    998332 May  6 22:35 agis_schedconf.cvmfs.json
2025-05-07 00:12:59 (7316): Guest Log: drwx------. 4 atlas atlas      4096 May  6 22:35 pilot3
2025-05-07 00:12:59 (7316): Guest Log: -rw-------. 1 atlas atlas 194340203 May  7 04:11 HITS.44506063._019624.pool.root.1
2025-05-07 00:12:59 (7316): Guest Log: -rw-------. 1 atlas atlas      1032 May  7 04:12 memory_monitor_summary.json
2025-05-07 00:12:59 (7316): Guest Log: -rw-------. 1 atlas atlas   1596741 May  7 04:12 agis_ddmendpoints.agis.ALL.json
2025-05-07 00:12:59 (7316): Guest Log: -rw-------. 1 atlas atlas    405418 May  7 04:12 log.44506063._019624.job.log.tgz.1
2025-05-07 00:12:59 (7316): Guest Log: -rw-------. 1 atlas atlas        95 May  7 04:12 pilot_heartbeat.json
2025-05-07 00:12:59 (7316): Guest Log: -rw-------. 1 atlas atlas      7733 May  7 04:12 heartbeat.json
2025-05-07 00:12:59 (7316): Guest Log: -rw-------. 1 atlas atlas      4536 May  7 04:12 pilotlog.txt
2025-05-07 00:12:59 (7316): Guest Log: -rw-------. 1 atlas atlas   1425150 May  7 04:12 log.44506063._019624.job.log.1
2025-05-07 00:12:59 (7316): Guest Log: -rw-------. 1 atlas atlas       357 May  7 04:12 output.list
2025-05-07 00:12:59 (7316): Guest Log: -rw-r--r--. 1 atlas atlas       620 May  7 04:12 runtime_log
2025-05-07 00:12:59 (7316): Guest Log: -rw-------. 1 atlas atlas   1853440 May  7 04:12 result.tar.gz
2025-05-07 00:12:59 (7316): Guest Log: -rw-r--r--. 1 atlas atlas     10930 May  7 04:12 runtime_log.err
2025-05-07 00:12:59 (7316): Guest Log: -rw-------. 1 atlas atlas       656 May  7 04:12 DJlMDmiXPW7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmHhGLDmJs8eBo.diag
2025-05-07 00:12:59 (7316): Guest Log: Looking for outputfile HITS.44506063._019624.pool.root.1
2025-05-07 00:12:59 (7316): Guest Log: HITS file was successfully produced
2025-05-07 00:12:59 (7316): Guest Log: -rw-------. 1 atlas atlas 194340203 May  7 04:11 /home/atlas/RunAtlas/HITS.44506063._019624.pool.root.1
2025-05-07 00:13:01 (7316): Guest Log: Successfully finished the ATLAS job!
2025-05-07 00:13:01 (7316): Guest Log: Copying the results back to the shared directory!
2025-05-07 00:13:01 (7316): Guest Log:  *** Contents of shared directory: ***
2025-05-07 00:13:01 (7316): Guest Log: total 411200
2025-05-07 00:13:01 (7316): Guest Log: -rwxrwxrwx. 1 root root 224324219 May  6 22:32 ATLAS.root_0
2025-05-07 00:13:01 (7316): Guest Log: -rwxrwxrwx. 1 root root 194340203 May  7 04:13 HITS.pool.root.1
2025-05-07 00:13:01 (7316): Guest Log: -rwxrwxrwx. 1 root root      8444 May  6 22:32 init_data.xml
2025-05-07 00:13:01 (7316): Guest Log: -rwxrwxrwx. 1 root root    508878 May  6 11:01 input.tar.gz
2025-05-07 00:13:01 (7316): Guest Log: -rwxrwxrwx. 1 root root   1853440 May  7 04:13 result.tar.gz
2025-05-07 00:13:01 (7316): Guest Log: -rwxrwxrwx. 1 root root     17569 May  6 11:01 start_atlas.sh
2025-05-07 00:13:01 (7316): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-07 00:13:01 (7316): VM Completion File Detected.
2025-05-07 00:13:01 (7316): Powering off VM.
2025-05-07 00:13:02 (7316): Successfully stopped VM.
2025-05-07 00:13:02 (7316): Deregistering VM. (boinc_c1763d66142b2538, slot#0)
2025-05-07 00:13:02 (7316): Removing network bandwidth throttle group from VM.
2025-05-07 00:13:02 (7316): Removing VM from VirtualBox.
00:13:08 (7316): called boinc_finish(0)

</stderr_txt>
]]>

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