Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:29:06 (96063): wrapper (7.7.26015): starting
05:29:06 (96063): wrapper: running run_atlas (--nthreads 8)
[2025-05-06 05:29:06] Arguments: --nthreads 8
[2025-05-06 05:29:06] Threads: 8
[2025-05-06 05:29:06] Checking for CVMFS
[2025-05-06 05:29:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-06 05:29:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-06 05:29:07] Running cvmfs_config stat atlas.cern.ch
[2025-05-06 05:29:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-06 05:29:08] 2.11.2.0 89917 2970 140000 145671 3 186 13971105 18432000 12513 130560 0 9592761 99.264 11974177 46255 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-05-06 05:29:08] CVMFS is ok
[2025-05-06 05:29:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-06 05:29:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-06 05:29:08] Further information can be found at the LHC@home message board.
[2025-05-06 05:29:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-06 05:29:08] Checking for apptainer binary...
[2025-05-06 05:29:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-06 05:29:08] Running /usr/bin/apptainer --version
[2025-05-06 05:29:08] apptainer version 1.3.2-1.el7
[2025-05-06 05:29:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-06 05:29:15] c-212-3.aglt2.org
[2025-05-06 05:29:15] apptainer works
[2025-05-06 05:29:15] Set ATHENA_PROC_NUMBER=8
[2025-05-06 05:29:15] Set ATHENA_CORE_NUMBER=8
[2025-05-06 05:29:15] Starting ATLAS job with PandaID=6634477726
[2025-05-06 05:29:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:20:02 (96063): BOINC client no longer exists - exiting
10:20:02 (96063): timer handler: client dead, exiting
10:29:09 (8143): wrapper (7.7.26015): starting
10:29:09 (8143): wrapper: running run_atlas (--nthreads 8)
[2025-05-06 10:29:09] Arguments: --nthreads 8
[2025-05-06 10:29:09] Threads: 8
[2025-05-06 10:29:09] This job has been restarted, cleaning up previous attempt
[2025-05-06 10:29:09] Checking for CVMFS
[2025-05-06 10:29:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-06 10:29:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-06 10:29:10] Running cvmfs_config stat atlas.cern.ch
[2025-05-06 10:29:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-06 10:29:11] 2.11.2.0 89917 3270 155400 145678 0 98 15119975 18432000 12519 130560 0 10941723 99.339 12360950 46474 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-05-06 10:29:11] CVMFS is ok
[2025-05-06 10:29:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-06 10:29:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-06 10:29:11] Further information can be found at the LHC@home message board.
[2025-05-06 10:29:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-06 10:29:11] Checking for apptainer binary...
[2025-05-06 10:29:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-06 10:29:11] Running /usr/bin/apptainer --version
[2025-05-06 10:29:11] apptainer version 1.3.2-1.el7
[2025-05-06 10:29:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-06 10:29:13] c-212-3.aglt2.org
[2025-05-06 10:29:13] apptainer works
[2025-05-06 10:29:13] Set ATHENA_PROC_NUMBER=8
[2025-05-06 10:29:13] Set ATHENA_CORE_NUMBER=8
[2025-05-06 10:29:13] Starting ATLAS job with PandaID=6634477726
[2025-05-06 10:29:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-06 15:50:12]  *** The last 200 lines of the pilot log: ***
[2025-05-06 15:50:12] 2025-05-06 19:49:46,909 | INFO     | mean y: 2398794.0415335465
[2025-05-06 15:50:12] 2025-05-06 19:49:46,909 | INFO     | -- intersect: -32421913671.325943
[2025-05-06 15:50:12] 2025-05-06 19:49:46,910 | INFO     | intersect: -32421913671.325943
[2025-05-06 15:50:12] 2025-05-06 19:49:46,910 | INFO     | chi2: 7.439929319119508
[2025-05-06 15:50:12] 2025-05-06 19:49:46,910 | INFO     | sum of square deviations: 9059949972.129932
[2025-05-06 15:50:12] 2025-05-06 19:49:46,922 | INFO     | sum of deviations: 215293404326.74045
[2025-05-06 15:50:12] 2025-05-06 19:49:46,922 | INFO     | mean x: 1746551224.6493506
[2025-05-06 15:50:12] 2025-05-06 19:49:46,922 | INFO     | mean y: 2411841.701298701
[2025-05-06 15:50:12] 2025-05-06 19:49:46,922 | INFO     | -- intersect: -41501234441.3914
[2025-05-06 15:50:12] 2025-05-06 19:49:46,922 | INFO     | intersect: -41501234441.3914
[2025-05-06 15:50:12] 2025-05-06 19:49:46,922 | INFO     | chi2: 5.853100768931642
[2025-05-06 15:50:12] 2025-05-06 19:49:46,923 | INFO     | current chi2=5.853100768931642 (change=21.328543352017512 %)
[2025-05-06 15:50:12] 2025-05-06 19:49:46,923 | INFO     | right removable region: 307
[2025-05-06 15:50:12] 2025-05-06 19:49:46,923 | INFO     | sum of square deviations: 9059921912.129932
[2025-05-06 15:50:12] 2025-05-06 19:49:46,933 | INFO     | sum of deviations: 89719862533.06502
[2025-05-06 15:50:12] 2025-05-06 19:49:46,933 | INFO     | mean x: 1746551529.6493506
[2025-05-06 15:50:12] 2025-05-06 19:49:46,933 | INFO     | mean y: 2428269.074675325
[2025-05-06 15:50:12] 2025-05-06 19:49:46,934 | INFO     | -- intersect: -17293566626.560673
[2025-05-06 15:50:12] 2025-05-06 19:49:46,934 | INFO     | intersect: -17293566626.560673
[2025-05-06 15:50:12] 2025-05-06 19:49:46,934 | INFO     | chi2: 4.299889572477979
[2025-05-06 15:50:12] 2025-05-06 19:49:46,934 | INFO     | current chi2=4.299889572477979 (change=42.2052362590609 %)
[2025-05-06 15:50:12] 2025-05-06 19:49:46,934 | INFO     | sum of square deviations: 8625797417.016481
[2025-05-06 15:50:12] 2025-05-06 19:49:46,944 | INFO     | sum of deviations: 23475368509.874603
[2025-05-06 15:50:12] 2025-05-06 19:49:46,945 | INFO     | mean x: 1746551682.1518152
[2025-05-06 15:50:12] 2025-05-06 19:49:46,945 | INFO     | mean y: 2451541.0462046205
[2025-05-06 15:50:12] 2025-05-06 19:49:46,945 | INFO     | -- intersect: -4750841676.711369
[2025-05-06 15:50:12] 2025-05-06 19:49:46,945 | INFO     | intersect: -4750841676.711369
[2025-05-06 15:50:12] 2025-05-06 19:49:46,945 | INFO     | chi2: 2.6011320116838603
[2025-05-06 15:50:12] 2025-05-06 19:49:46,945 | INFO     | current chi2=2.6011320116838603 (change=39.50700435814084 %)
[2025-05-06 15:50:12] 2025-05-06 19:49:46,945 | INFO     | sum of square deviations: 8205766209.399314
[2025-05-06 15:50:12] 2025-05-06 19:49:46,947 | INFO     | sum of deviations: -19208838556.093964
[2025-05-06 15:50:12] 2025-05-06 19:49:46,947 | INFO     | mean x: 1746551834.6543624
[2025-05-06 15:50:12] 2025-05-06 19:49:46,947 | INFO     | mean y: 2466978.610738255
[2025-05-06 15:50:12] 2025-05-06 19:49:46,948 | INFO     | -- intersect: 4090961747.4839144
[2025-05-06 15:50:12] 2025-05-06 19:49:46,948 | INFO     | intersect: 4090961747.4839144
[2025-05-06 15:50:12] 2025-05-06 19:49:46,956 | INFO     | chi2: 1.7634022338859885
[2025-05-06 15:50:12] 2025-05-06 19:49:46,956 | INFO     | current chi2=1.7634022338859885 (change=32.206353773469644 %)
[2025-05-06 15:50:12] 2025-05-06 19:49:46,957 | INFO     | sum of square deviations: 7799613904.088725
[2025-05-06 15:50:12] 2025-05-06 19:49:46,958 | INFO     | sum of deviations: -33351777036.385666
[2025-05-06 15:50:12] 2025-05-06 19:49:46,958 | INFO     | mean x: 1746551987.1535835
[2025-05-06 15:50:12] 2025-05-06 19:49:46,959 | INFO     | mean y: 2472288.986348123
[2025-05-06 15:50:12] 2025-05-06 19:49:46,959 | INFO     | -- intersect: 7470869208.924451
[2025-05-06 15:50:12] 2025-05-06 19:49:46,959 | INFO     | intersect: 7470869208.924451
[2025-05-06 15:50:12] 2025-05-06 19:49:46,959 | INFO     | chi2: 1.6826600438212647
[2025-05-06 15:50:12] 2025-05-06 19:49:46,959 | INFO     | current chi2=1.6826600438212647 (change=4.57877326642562 %)
[2025-05-06 15:50:12] 2025-05-06 19:49:46,959 | INFO     | left removable region: 40
[2025-05-06 15:50:12] 2025-05-06 19:49:46,959 | INFO     | sum of square deviations: 5902104339.303359
[2025-05-06 15:50:12] 2025-05-06 19:49:46,969 | INFO     | sum of deviations: 3536995511.247191
[2025-05-06 15:50:12] 2025-05-06 19:49:46,969 | INFO     | mean x: 1746552414.1460674
[2025-05-06 15:50:12] 2025-05-06 19:49:46,969 | INFO     | mean y: 2488483.3782771537
[2025-05-06 15:50:12] 2025-05-06 19:49:46,970 | INFO     | -- intersect: -1044180245.9179822
[2025-05-06 15:50:12] 2025-05-06 19:49:46,970 | INFO     | intersect: -1044180245.9179822
[2025-05-06 15:50:12] 2025-05-06 19:49:46,970 | INFO     | chi2: 0.0012822143739003185
[2025-05-06 15:50:12] 2025-05-06 19:49:46,970 | INFO     | -- intersect: -1044180245.9179822
[2025-05-06 15:50:12] 2025-05-06 19:49:46,970 | INFO     | current memory leak: 0.60 B/s (using 267 data points, chi2=0.00)
[2025-05-06 15:50:12] 2025-05-06 19:49:46,971 | INFO     | ..............................
[2025-05-06 15:50:12] 2025-05-06 19:49:46,971 | INFO     | . Timing measurements:
[2025-05-06 15:50:12] 2025-05-06 19:49:46,971 | INFO     | . get job = 0 s
[2025-05-06 15:50:12] 2025-05-06 19:49:46,971 | INFO     | . initial setup = 2 s
[2025-05-06 15:50:12] 2025-05-06 19:49:46,971 | INFO     | . payload setup = 17 s
[2025-05-06 15:50:12] 2025-05-06 19:49:46,971 | INFO     | . stage-in = 0 s
[2025-05-06 15:50:12] 2025-05-06 19:49:46,971 | INFO     | . payload execution = 19073 s
[2025-05-06 15:50:12] 2025-05-06 19:49:46,971 | INFO     | . stage-out = 4 s
[2025-05-06 15:50:12] 2025-05-06 19:49:46,971 | INFO     | . log creation = 0 s
[2025-05-06 15:50:12] 2025-05-06 19:49:46,971 | INFO     | ..............................
[2025-05-06 15:50:12] 2025-05-06 19:49:47,312 | INFO     | 
[2025-05-06 15:50:12] 2025-05-06 19:49:47,312 | INFO     | job summary report
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | --------------------------------------------------
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | PanDA job id: 6634477726
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | task id: 44506063
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | errors: (none)
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | pilot state: finished 
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | transexitcode: 0
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | exeerrorcode: 0
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | exeerrordiag: 
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | exitcode: 0
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | exitmsg: OK
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | cpuconsumptiontime: 38473 s
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | nevents: 400
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | neventsw: 0
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | pid: 72094
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | pgrp: 72094
[2025-05-06 15:50:12] 2025-05-06 19:49:47,313 | INFO     | corecount: 8
[2025-05-06 15:50:12] 2025-05-06 19:49:47,314 | INFO     | event service: False
[2025-05-06 15:50:12] 2025-05-06 19:49:47,314 | INFO     | sizes: {0: 2392906, 1: 2393591, 2: 2393790, 13: 2393790, 15: 2394052, 24: 2394080, 19095: 2427103, 19100: 2436044, 19101: 2436100, 19167: 2436270}
[2025-05-06 15:50:12] 2025-05-06 19:49:47,314 | INFO     | --------------------------------------------------
[2025-05-06 15:50:12] 2025-05-06 19:49:47,314 | INFO     | 
[2025-05-06 15:50:12] 2025-05-06 19:49:47,314 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-05-06 15:50:12] 2025-05-06 19:49:47,640 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,641 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,641 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,641 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,641 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,641 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,641 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,641 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,641 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,641 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,641 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,641 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,641 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,641 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,641 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,642 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,642 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,642 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-06 15:50:12] 2025-05-06 19:49:47,642 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,642 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-06 15:50:12] 2025-05-06 19:49:47,642 | INFO     | job 6634477726 has completed (purged errors)
[2025-05-06 15:50:12] 2025-05-06 19:49:47,642 | INFO     | overall cleanup function is called
[2025-05-06 15:50:12] 2025-05-06 19:49:48,650 | INFO     | --- collectZombieJob: --- 10, [72094]
[2025-05-06 15:50:12] 2025-05-06 19:49:48,650 | INFO     | zombie collector waiting for pid 72094
[2025-05-06 15:50:12] 2025-05-06 19:49:48,650 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-06 15:50:12] 2025-05-06 19:49:48,651 | INFO     | collected zombie processes
[2025-05-06 15:50:12] 2025-05-06 19:49:48,651 | INFO     | will attempt to kill all subprocesses of pid=72094
[2025-05-06 15:50:12] 2025-05-06 19:49:50,954 | INFO     | process IDs to be killed: [72094] (in reverse order)
[2025-05-06 15:50:12] 2025-05-06 19:49:51,803 | WARNING  | found no corresponding commands to process id(s)
[2025-05-06 15:50:12] 2025-05-06 19:49:51,803 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-06 15:50:12] 2025-05-06 19:49:51,915 | INFO     | did not find any defunct processes belonging to 72094
[2025-05-06 15:50:12] 2025-05-06 19:49:52,171 | INFO     | did not find any defunct processes belonging to 72094
[2025-05-06 15:50:12] 2025-05-06 19:49:52,171 | INFO     | ready for new job
[2025-05-06 15:50:12] 2025-05-06 19:49:52,171 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-06 15:50:12] 2025-05-06 19:49:52,208 | INFO     | **************************************
[2025-05-06 15:50:12] 2025-05-06 19:49:52,208 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-06 15:50:12] 2025-05-06 19:49:52,208 | INFO     | **************************************
[2025-05-06 15:50:12] 2025-05-06 19:49:52,208 | INFO     | 
[2025-05-06 15:50:12] 2025-05-06 19:49:52,282 | INFO     | architecture information:
[2025-05-06 15:50:12] 2025-05-06 19:49:52,290 | INFO     | executing command: cat /etc/os-release
[2025-05-06 15:50:12] 2025-05-06 19:49:52,450 | INFO     | cat /etc/os-release:
[2025-05-06 15:50:12] NAME="CentOS Linux"
[2025-05-06 15:50:12] VERSION="7 (Core)"
[2025-05-06 15:50:12] ID="centos"
[2025-05-06 15:50:12] ID_LIKE="rhel fedora"
[2025-05-06 15:50:12] VERSION_ID="7"
[2025-05-06 15:50:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-06 15:50:12] ANSI_COLOR="0;31"
[2025-05-06 15:50:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-06 15:50:12] HOME_URL="https://www.centos.org/"
[2025-05-06 15:50:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-06 15:50:12] 
[2025-05-06 15:50:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-06 15:50:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-06 15:50:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-06 15:50:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-06 15:50:12] 
[2025-05-06 15:50:12] 2025-05-06 19:49:52,451 | INFO     | **************************************
[2025-05-06 15:50:12] 2025-05-06 19:49:52,955 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-05-06 15:50:12] 2025-05-06 19:49:52,972 | INFO     | sufficient remaining disk space (103449362432 B)
[2025-05-06 15:50:12] 2025-05-06 19:49:52,972 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-06 15:50:12] 2025-05-06 19:49:52,972 | INFO     | current server update state: UPDATING_FINAL
[2025-05-06 15:50:12] 2025-05-06 19:49:52,973 | INFO     | update_server=False
[2025-05-06 15:50:12] 2025-05-06 19:49:52,973 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-06 15:50:12] 2025-05-06 19:49:52,973 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-06 15:50:12] 2025-05-06 19:49:52,975 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-06 15:50:12] 2025-05-06 19:49:52,975 | INFO     | aborting loop
[2025-05-06 15:50:12] 2025-05-06 19:49:53,141 | INFO     | PID=30129 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-05-06 15:50:12] 2025-05-06 19:49:53,141 | INFO     | .. there are 18 such processes running
[2025-05-06 15:50:12] 2025-05-06 19:49:53,142 | INFO     | found 0 job(s) in 20 queues
[2025-05-06 15:50:12] 2025-05-06 19:49:53,142 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-06 15:50:12] 2025-05-06 19:49:53,142 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-06 15:50:12] 2025-05-06 19:49:53,645 | INFO     | all job control threads have been joined
[2025-05-06 15:50:12] 2025-05-06 19:49:53,847 | INFO     | all data control threads have been joined
[2025-05-06 15:50:12] 2025-05-06 19:49:53,997 | INFO     | [job] job monitor thread has finished
[2025-05-06 15:50:12] 2025-05-06 19:49:53,998 | INFO     | [job] retrieve thread has finished
[2025-05-06 15:50:12] 2025-05-06 19:49:54,001 | INFO     | [job] queue monitor thread has finished
[2025-05-06 15:50:12] 2025-05-06 19:49:54,092 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-06 15:50:12] 2025-05-06 19:49:54,253 | INFO     | all payload control threads have been joined
[2025-05-06 15:50:12] 2025-05-06 19:49:54,305 | INFO     | [payload] validate_post thread has finished
[2025-05-06 15:50:12] 2025-05-06 19:49:54,320 | INFO     | [payload] validate_pre thread has finished
[2025-05-06 15:50:12] 2025-05-06 19:49:54,461 | INFO     | [data] copytool_in thread has finished
[2025-05-06 15:50:12] 2025-05-06 19:49:54,651 | INFO     | [job] control thread has finished
[2025-05-06 15:50:12] 2025-05-06 19:49:54,853 | INFO     | [data] control thread has finished
[2025-05-06 15:50:12] 2025-05-06 19:49:54,908 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-06 15:50:12] 2025-05-06 19:49:55,050 | INFO     | [job] create_data_payload thread has finished
[2025-05-06 15:50:12] 2025-05-06 19:49:55,096 | INFO     | [job] validate thread has finished
[2025-05-06 15:50:12] 2025-05-06 19:49:55,204 | INFO     | [payload] execute_payloads thread has finished
[2025-05-06 15:50:12] 2025-05-06 19:49:55,259 | INFO     | [payload] control thread has finished
[2025-05-06 15:50:12] 2025-05-06 19:49:55,491 | INFO     | [payload] failed_post thread has finished
[2025-05-06 15:50:12] 2025-05-06 19:49:56,099 | INFO     | [data] copytool_out thread has finished
[2025-05-06 15:50:12] 2025-05-06 19:49:58,917 | INFO     | [data] queue_monitor thread has finished
[2025-05-06 15:50:12] 2025-05-06 19:50:03,214 | INFO     | job.realtimelogging is not enabled
[2025-05-06 15:50:12] 2025-05-06 19:50:04,222 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-06 15:50:12] 2025-05-06 19:50:04,711 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140603203151680)>', '<ExcThread(monitor, started 140602909902592)>']
[2025-05-06 15:50:12] 2025-05-06 19:50:05,220 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-06 15:50:12] 2025-05-06 19:50:05,220 | INFO     | [monitor] control thread has ended
[2025-05-06 15:50:12] 2025-05-06 19:50:09,737 | INFO     | all workflow threads have been joined
[2025-05-06 15:50:12] 2025-05-06 19:50:09,737 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-06 15:50:12] 2025-05-06 19:50:09,737 | INFO     | traces error code: 0
[2025-05-06 15:50:12] 2025-05-06 19:50:09,738 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-06 15:50:12] 2025-05-06 19:50:09,898 [wrapper] ==== pilot stdout END ====
[2025-05-06 15:50:12] 2025-05-06 19:50:09,933 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-06 15:50:12] 2025-05-06 19:50:09,969 [wrapper] pilotpid: 30129
[2025-05-06 15:50:12] 2025-05-06 19:50:10,004 [wrapper] Pilot exit status: 0
[2025-05-06 15:50:12] 2025-05-06 19:50:10,170 [wrapper] pandaids: 6634477726 6634477726
[2025-05-06 15:50:12] 2025-05-06 19:50:10,578 [wrapper] cleanup supervisor_pilot 44442 30130
[2025-05-06 15:50:12] 2025-05-06 19:50:10,613 [wrapper] Test setup, not cleaning
[2025-05-06 15:50:12] 2025-05-06 19:50:10,653 [wrapper] apfmon messages muted
[2025-05-06 15:50:12] 2025-05-06 19:50:10,689 [wrapper] ==== wrapper stdout END ====
[2025-05-06 15:50:12] 2025-05-06 19:50:10,720 [wrapper] ==== wrapper stderr END ====
[2025-05-06 15:50:12]  *** Error codes and diagnostics ***
[2025-05-06 15:50:12]     "exeErrorCode": 0,
[2025-05-06 15:50:12]     "exeErrorDiag": "",
[2025-05-06 15:50:12]     "pilotErrorCode": 0,
[2025-05-06 15:50:12]     "pilotErrorDiag": "",
[2025-05-06 15:50:12]  *** Listing of results directory ***
[2025-05-06 15:50:12] total 631380
[2025-05-06 15:50:12] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-05-06 15:50:12] -rw-r--r-- 1 boincer umatlas    495897 May  5 17:34 pilot3.tar.gz
[2025-05-06 15:50:12] -rw-r--r-- 1 boincer umatlas      5111 May  5 17:57 queuedata.json
[2025-05-06 15:50:12] -rwx------ 1 boincer umatlas     37140 May  5 17:58 runpilot2-wrapper.sh
[2025-05-06 15:50:12] -rw-r--r-- 1 boincer umatlas       100 May  6 05:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-06 15:50:12] -rwxr-xr-x 1 boincer umatlas      7986 May  6 05:29 run_atlas
[2025-05-06 15:50:12] -rw-r--r-- 1 boincer umatlas       105 May  6 05:29 job.xml
[2025-05-06 15:50:12] -rw-r--r-- 3 boincer umatlas 221987978 May  6 05:29 EVNT.44506061._000635.pool.root.1
[2025-05-06 15:50:12] -rw-r--r-- 3 boincer umatlas 221987978 May  6 05:29 ATLAS.root_0
[2025-05-06 15:50:12] -rw-r--r-- 2 boincer umatlas     17569 May  6 05:29 start_atlas.sh
[2025-05-06 15:50:12] drwxrwx--x 2 boincer umatlas      4096 May  6 05:29 shared
[2025-05-06 15:50:12] -rw-r--r-- 2 boincer umatlas    508879 May  6 05:29 input.tar.gz
[2025-05-06 15:50:12] -rw-r--r-- 1 boincer umatlas         0 May  6 05:29 boinc_lockfile
[2025-05-06 15:50:12] -rw-r--r-- 1 boincer umatlas      2555 May  6 10:29 pandaJob.out
[2025-05-06 15:50:12] -rw------- 1 boincer umatlas       467 May  6 10:29 setup.sh.local
[2025-05-06 15:50:12] -rw------- 1 boincer umatlas    998316 May  6 10:29 agis_schedconf.cvmfs.json
[2025-05-06 15:50:12] -rw------- 1 boincer umatlas 194572637 May  6 15:46 HITS.44506063._015837.pool.root.1
[2025-05-06 15:50:12] -rw-r--r-- 1 boincer umatlas       531 May  6 15:47 boinc_task_state.xml
[2025-05-06 15:50:12] -rw------- 1 boincer umatlas      1074 May  6 15:48 memory_monitor_summary.json
[2025-05-06 15:50:12] -rw------- 1 boincer umatlas   1596741 May  6 15:48 agis_ddmendpoints.agis.ALL.json
[2025-05-06 15:50:12] -rw------- 1 boincer umatlas    429123 May  6 15:48 log.44506063._015837.job.log.tgz.1
[2025-05-06 15:50:12] -rw-r--r-- 1 boincer umatlas      6387 May  6 15:49 init_data.xml
[2025-05-06 15:50:12] -rw------- 1 boincer umatlas        96 May  6 15:49 pilot_heartbeat.json
[2025-05-06 15:50:12] -rw------- 1 boincer umatlas      7738 May  6 15:49 heartbeat.json
[2025-05-06 15:50:12] -rw------- 1 boincer umatlas      4819 May  6 15:50 pilotlog.txt
[2025-05-06 15:50:12] -rw-r--r-- 1 boincer umatlas        28 May  6 15:50 wrapper_checkpoint.txt
[2025-05-06 15:50:12] -rw------- 1 boincer umatlas   1634483 May  6 15:50 log.44506063._015837.job.log.1
[2025-05-06 15:50:12] -rw-r--r-- 1 boincer umatlas      8192 May  6 15:50 boinc_mmap_file
[2025-05-06 15:50:12] -rw------- 1 boincer umatlas       357 May  6 15:50 output.list
[2025-05-06 15:50:12] -rw-r--r-- 1 boincer umatlas       620 May  6 15:50 runtime_log
[2025-05-06 15:50:12] -rw------- 1 boincer umatlas   2078720 May  6 15:50 result.tar.gz
[2025-05-06 15:50:12] -rw-r--r-- 1 boincer umatlas     11499 May  6 15:50 runtime_log.err
[2025-05-06 15:50:12] -rw------- 1 boincer umatlas       787 May  6 15:50 dXYMDmI0IW7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm9g2LDmmuXv9m.diag
[2025-05-06 15:50:12] -rw-r--r-- 1 boincer umatlas     23199 May  6 15:50 stderr.txt
[2025-05-06 15:50:12] HITS file was successfully produced:
[2025-05-06 15:50:12] -rw------- 1 boincer umatlas 194572637 May  6 15:46 shared/HITS.pool.root.1
[2025-05-06 15:50:12]  *** Contents of shared directory: ***
[2025-05-06 15:50:12] total 409364
[2025-05-06 15:50:12] -rw-r--r-- 3 boincer umatlas 221987978 May  6 05:29 ATLAS.root_0
[2025-05-06 15:50:12] -rw-r--r-- 2 boincer umatlas     17569 May  6 05:29 start_atlas.sh
[2025-05-06 15:50:12] -rw-r--r-- 2 boincer umatlas    508879 May  6 05:29 input.tar.gz
[2025-05-06 15:50:12] -rw------- 1 boincer umatlas 194572637 May  6 15:46 HITS.pool.root.1
[2025-05-06 15:50:12] -rw------- 1 boincer umatlas   2078720 May  6 15:50 result.tar.gz
15:50:13 (8143): run_atlas exited; CPU time 38138.250454
15:50:13 (8143): called boinc_finish(0)

</stderr_txt>
]]>

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