Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-06 00:00:41 (3584): Detected: vboxwrapper 26206
2025-05-06 00:00:41 (3584): Detected: BOINC client v8.0.4
2025-05-06 00:00:42 (3584): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-05-06 00:00:42 (3584): Successfully copied 'init_data.xml' to the shared directory.
2025-05-06 00:00:43 (3584): Create VM. (boinc_bc52ebc7fd99b217, slot#2)
2025-05-06 00:00:44 (3584): Setting Memory Size for VM. (4300MB)
2025-05-06 00:00:44 (3584): Setting CPU Count for VM. (3)
2025-05-06 00:00:45 (3584): Setting Chipset Options for VM.
2025-05-06 00:00:45 (3584): Setting Graphics Controller Options for VM.
2025-05-06 00:00:45 (3584): Setting Boot Options for VM.
2025-05-06 00:00:46 (3584): Setting Network Configuration for NAT.
2025-05-06 00:00:46 (3584): Enabling VM Network Access.
2025-05-06 00:00:46 (3584): Disabling USB Support for VM.
2025-05-06 00:00:47 (3584): Disabling COM Port Support for VM.
2025-05-06 00:00:48 (3584): Disabling LPT Port Support for VM.
2025-05-06 00:00:48 (3584): Disabling Audio Support for VM.
2025-05-06 00:00:48 (3584): Disabling Clipboard Support for VM.
2025-05-06 00:00:48 (3584): Disabling Drag and Drop Support for VM.
2025-05-06 00:00:49 (3584): Adding storage controller(s) to VM.
2025-05-06 00:00:49 (3584): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-06 00:00:53 (3584): Adding VirtualBox Guest Additions to VM.
2025-05-06 00:00:54 (3584): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-06 00:00:54 (3584): forwarding host port 52439 to guest port 80
2025-05-06 00:00:54 (3584): Enabling remote desktop for VM.
2025-05-06 00:00:55 (3584): Enabling shared directory for VM.
2025-05-06 00:00:56 (3584): Starting VM using VBoxManage interface. (boinc_bc52ebc7fd99b217, slot#2)
2025-05-06 00:01:09 (3584): Successfully started VM. (PID = '5752')
2025-05-06 00:01:09 (3584): Reporting VM Process ID to BOINC.
2025-05-06 00:01:09 (3584): Guest Log: BIOS: VirtualBox 7.1.6
2025-05-06 00:01:09 (3584): Guest Log: CPUID EDX: 0x178bfbff
2025-05-06 00:01:09 (3584): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-06 00:01:09 (3584): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-06 00:01:09 (3584): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-06 00:01:09 (3584): Detected: Web Application Enabled (http://localhost:52439)
2025-05-06 00:01:09 (3584): Detected: Remote Desktop Enabled (localhost:52441)
2025-05-06 00:01:09 (3584): Preference change detected
2025-05-06 00:01:09 (3584): Setting CPU throttle for VM. (100%)
2025-05-06 00:01:09 (3584): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-06 00:01:11 (3584): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-06 00:01:11 (3584): Guest Log: BIOS: Booting from Hard Disk...
2025-05-06 00:01:15 (3584): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-06 00:01:15 (3584): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-06 00:01:15 (3584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-06 00:01:28 (3584): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-06 00:01:28 (3584): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-06 00:02:29 (3584): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-06 00:02:29 (3584): Guest Log: 00:00:00.000215 main     Log opened 2025-05-06T00:02:28.011029000Z
2025-05-06 00:02:29 (3584): Guest Log: 00:00:00.000349 main     OS Product: Linux
2025-05-06 00:02:29 (3584): Guest Log: 00:00:00.000404 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-06 00:02:29 (3584): Guest Log: 00:00:00.000497 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-06 00:02:29 (3584): Guest Log: 00:00:00.000553 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-06 00:02:29 (3584): Guest Log: 00:00:00.000555 main     Process ID: 1323
2025-05-06 00:02:29 (3584): Guest Log: 00:00:00.000556 main     Package type: LINUX_64BITS_GENERIC
2025-05-06 00:02:29 (3584): Guest Log: 00:00:00.001920 main     5.2.32 r132073 started. Verbose level = 0
2025-05-06 00:02:30 (3584): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-06 00:02:30 (3584): Guest Log: [INFO] Mounting shared directory
2025-05-06 00:02:30 (3584): Guest Log: [INFO] Checking for init_data.xml
2025-05-06 00:02:39 (3584): Guest Log: 00:00:10.005368 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 211 282 930 000ns (GuestNow=1 746 514 959 298 022 000 ns GuestLast=1 746 489 748 015 092 000 ns fSetTimeLastLoop=true )
2025-05-06 00:02:42 (3584): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-06 00:02:42 (3584): Guest Log: [INFO] Detected branch: prod
2025-05-06 00:02:43 (3584): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-06 00:02:43 (3584): Guest Log: Copying input files
2025-05-06 00:02:45 (3584): Guest Log: Copied input files into RunAtlas.
2025-05-06 00:02:45 (3584): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-06 00:02:45 (3584): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-06 00:02:45 (3584): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-06 00:02:45 (3584): Guest Log: Further information can be found at the LHC@home message board.
2025-05-06 00:03:01 (3584): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-06 00:03:02 (3584): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-06 00:03:02 (3584): Guest Log: 2.6.3.0 1604 0 32156 145665 4 1 3117345 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-06 00:03:43 (3584): Guest Log: copied the webapp to /var/www
2025-05-06 00:03:43 (3584): Guest Log: ATHENA_PROC_NUMBER=3
2025-05-06 00:03:43 (3584): Guest Log: ATHENA_CORE_NUMBER=3
2025-05-06 00:03:43 (3584): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-06 00:03:43 (3584): Guest Log:  *** Starting ATLAS job. (PandaID=6634673285 taskID=44506063) ***
2025-05-06 01:42:30 (3584): Status Report: Elapsed Time: '6000.297720'
2025-05-06 01:42:30 (3584): Status Report: CPU Time: '12589.859375'
2025-05-06 03:25:30 (3584): Status Report: Elapsed Time: '12000.324289'
2025-05-06 03:25:30 (3584): Status Report: CPU Time: '30664.250000'
2025-05-06 05:08:32 (3584): Status Report: Elapsed Time: '18000.843767'
2025-05-06 05:08:32 (3584): Status Report: CPU Time: '49046.015625'
2025-05-06 06:51:22 (3584): Status Report: Elapsed Time: '24000.970222'
2025-05-06 06:51:22 (3584): Status Report: CPU Time: '67376.781250'
2025-05-06 08:40:36 (3584): Status Report: Elapsed Time: '30001.307190'
2025-05-06 08:40:36 (3584): Status Report: CPU Time: '86665.812500'
2025-05-06 10:26:23 (3584): Status Report: Elapsed Time: '36002.146894'
2025-05-06 10:26:23 (3584): Status Report: CPU Time: '105119.156250'
2025-05-06 11:04:38 (3584): Guest Log:  *** Job finished ***
2025-05-06 11:04:38 (3584): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:26,007 | INFO     | [job] control thread has finished
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:26,573 | INFO     | [data] copytool_out thread has finished
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:27,258 | INFO     | [data] queue_monitor thread has finished
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:28,728 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139721885841216)>', '<ExcThread(monitor, started 139721283970816)>']
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:29,264 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:29,264 | INFO     | [monitor] control thread has ended
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:33,735 | INFO     | all workflow threads have been joined
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:33,735 | INFO     | end of generic workflow (traces error code: 0)
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:33,735 | INFO     | traces error code: 0
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:33,736 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:34,152 [wrapper] ==== pilot stdout END ====
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:34,161 [wrapper] ==== wrapper stdout RESUME ====
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:34,170 [wrapper] pilotpid: 5948
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:34,178 [wrapper] Pilot exit status: 0
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:34,323 [wrapper] pandaids: 6634673285
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:34,379 [wrapper] cleanup supervisor_pilot 20224 5949
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:34,389 [wrapper] Test setup, not cleaning
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:34,398 [wrapper] apfmon messages muted
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:34,409 [wrapper] ==== wrapper stdout END ====
2025-05-06 11:04:38 (3584): Guest Log: 2025-05-06 18:04:34,421 [wrapper] ==== wrapper stderr END ====
2025-05-06 11:04:38 (3584): Guest Log:  *** Error codes and diagnostics ***
2025-05-06 11:04:38 (3584): Guest Log:     "exeErrorCode": 0,
2025-05-06 11:04:38 (3584): Guest Log:     "exeErrorDiag": "",
2025-05-06 11:04:38 (3584): Guest Log:     "pilotErrorCode": 0,
2025-05-06 11:04:38 (3584): Guest Log:     "pilotErrorDiag": "",
2025-05-06 11:04:38 (3584): Guest Log:  *** Listing of results directory ***
2025-05-06 11:04:38 (3584): Guest Log: total 209264
2025-05-06 11:04:38 (3584): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May  6 03:27 pilot3.tar.gz
2025-05-06 11:04:38 (3584): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May  6 03:29 queuedata.json
2025-05-06 11:04:38 (3584): Guest Log: -rwx------. 1 atlas atlas     37140 May  6 03:29 runpilot2-wrapper.sh
2025-05-06 11:04:38 (3584): Guest Log: -rwxr-xr-x. 1 atlas atlas      9138 May  6 07:02 init_data.xml
2025-05-06 11:04:38 (3584): Guest Log: -rwxr-xr-x. 1 atlas atlas    508884 May  6 07:02 input.tar.gz
2025-05-06 11:04:38 (3584): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May  6 07:02 start_atlas.sh
2025-05-06 11:04:38 (3584): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May  6 07:02 EVNT.44506061._000754.pool.root.1 -> /data/./ATLAS.root_0
2025-05-06 11:04:38 (3584): Guest Log: -rw-r--r--. 1 atlas atlas      2556 May  6 07:03 pandaJob.out
2025-05-06 11:04:38 (3584): Guest Log: -rw-------. 1 atlas atlas       424 May  6 07:03 setup.sh.local
2025-05-06 11:04:38 (3584): Guest Log: -rw-------. 1 atlas atlas    997355 May  6 07:05 agis_schedconf.cvmfs.json
2025-05-06 11:04:38 (3584): Guest Log: drwx------. 4 atlas atlas      4096 May  6 07:05 pilot3
2025-05-06 11:04:38 (3584): Guest Log: -rw-------. 1 atlas atlas 203006438 May  6 18:02 HITS.44506063._018847.pool.root.1
2025-05-06 11:04:38 (3584): Guest Log: -rw-------. 1 atlas atlas      1033 May  6 18:03 memory_monitor_summary.json
2025-05-06 11:04:38 (3584): Guest Log: -rw-------. 1 atlas atlas        95 May  6 18:03 pilot_heartbeat.json
2025-05-06 11:04:38 (3584): Guest Log: -rw-------. 1 atlas atlas   1596741 May  6 18:03 agis_ddmendpoints.agis.ALL.json
2025-05-06 11:04:38 (3584): Guest Log: -rw-------. 1 atlas atlas    518519 May  6 18:03 log.44506063._018847.job.log.tgz.1
2025-05-06 11:04:38 (3584): Guest Log: -rw-------. 1 atlas atlas      7701 May  6 18:04 heartbeat.json
2025-05-06 11:04:38 (3584): Guest Log: -rw-------. 1 atlas atlas      4536 May  6 18:04 pilotlog.txt
2025-05-06 11:04:38 (3584): Guest Log: -rw-------. 1 atlas atlas   3227724 May  6 18:04 log.44506063._018847.job.log.1
2025-05-06 11:04:38 (3584): Guest Log: -rw-------. 1 atlas atlas       357 May  6 18:04 output.list
2025-05-06 11:04:38 (3584): Guest Log: -rw-r--r--. 1 atlas atlas       620 May  6 18:04 runtime_log
2025-05-06 11:04:38 (3584): Guest Log: -rw-------. 1 atlas atlas   3768320 May  6 18:04 result.tar.gz
2025-05-06 11:04:38 (3584): Guest Log: -rw-r--r--. 1 atlas atlas     10920 May  6 18:04 runtime_log.err
2025-05-06 11:04:38 (3584): Guest Log: -rw-------. 1 atlas atlas       657 May  6 18:04 apPMDmFBOW7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmXI3LDmxxtVLm.diag
2025-05-06 11:04:38 (3584): Guest Log: Looking for outputfile HITS.44506063._018847.pool.root.1
2025-05-06 11:04:38 (3584): Guest Log: HITS file was successfully produced
2025-05-06 11:04:38 (3584): Guest Log: -rw-------. 1 atlas atlas 203006438 May  6 18:02 /home/atlas/RunAtlas/HITS.44506063._018847.pool.root.1
2025-05-06 11:04:41 (3584): Guest Log: Successfully finished the ATLAS job!
2025-05-06 11:04:41 (3584): Guest Log: Copying the results back to the shared directory!
2025-05-06 11:04:41 (3584): Guest Log:  *** Contents of shared directory: ***
2025-05-06 11:04:41 (3584): Guest Log: total 419592
2025-05-06 11:04:41 (3584): Guest Log: -rwxrwxrwx. 1 root root 222335480 May  6 07:00 ATLAS.root_0
2025-05-06 11:04:41 (3584): Guest Log: -rwxrwxrwx. 1 root root 203006438 May  6 18:04 HITS.pool.root.1
2025-05-06 11:04:41 (3584): Guest Log: -rwxrwxrwx. 1 root root      9138 May  6 07:00 init_data.xml
2025-05-06 11:04:41 (3584): Guest Log: -rwxrwxrwx. 1 root root    508884 May  6 06:54 input.tar.gz
2025-05-06 11:04:41 (3584): Guest Log: -rwxrwxrwx. 1 root root   3768320 May  6 18:04 result.tar.gz
2025-05-06 11:04:41 (3584): Guest Log: -rwxrwxrwx. 1 root root     17569 May  6 06:54 start_atlas.sh
2025-05-06 11:04:41 (3584): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-06 11:04:42 (3584): VM Completion File Detected.
2025-05-06 11:04:42 (3584): Powering off VM.
2025-05-06 11:04:43 (3584): Successfully stopped VM.
2025-05-06 11:04:43 (3584): Deregistering VM. (boinc_bc52ebc7fd99b217, slot#2)
2025-05-06 11:04:43 (3584): Removing network bandwidth throttle group from VM.
2025-05-06 11:04:44 (3584): Removing VM from VirtualBox.
11:04:50 (3584): called boinc_finish(0)

</stderr_txt>
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