Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-06 06:41:42 (14788): Detected: vboxwrapper 26206
2025-05-06 06:41:42 (14788): Detected: BOINC client v8.0.2
2025-05-06 06:41:43 (14788): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-05-06 06:41:43 (14788): Successfully copied 'init_data.xml' to the shared directory.
2025-05-06 06:41:43 (14788): Create VM. (boinc_c0c63e7a0bf72835, slot#1)
2025-05-06 06:41:44 (14788): Setting Memory Size for VM. (4800MB)
2025-05-06 06:41:44 (14788): Setting CPU Count for VM. (8)
2025-05-06 06:41:44 (14788): Setting Chipset Options for VM.
2025-05-06 06:41:45 (14788): Setting Graphics Controller Options for VM.
2025-05-06 06:41:45 (14788): Setting Boot Options for VM.
2025-05-06 06:41:45 (14788): Setting Network Configuration for NAT.
2025-05-06 06:41:45 (14788): Enabling VM Network Access.
2025-05-06 06:41:46 (14788): Disabling USB Support for VM.
2025-05-06 06:41:46 (14788): Disabling COM Port Support for VM.
2025-05-06 06:41:46 (14788): Disabling LPT Port Support for VM.
2025-05-06 06:41:47 (14788): Disabling Audio Support for VM.
2025-05-06 06:41:47 (14788): Disabling Clipboard Support for VM.
2025-05-06 06:41:47 (14788): Disabling Drag and Drop Support for VM.
2025-05-06 06:41:47 (14788): Adding storage controller(s) to VM.
2025-05-06 06:41:48 (14788): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-06 06:41:50 (14788): Adding VirtualBox Guest Additions to VM.
2025-05-06 06:41:51 (14788): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-06 06:41:51 (14788): forwarding host port 49662 to guest port 80
2025-05-06 06:41:51 (14788): Enabling remote desktop for VM.
2025-05-06 06:41:52 (14788): Required extension pack not installed, remote desktop not enabled.
2025-05-06 06:41:52 (14788): Enabling shared directory for VM.
2025-05-06 06:41:52 (14788): Starting VM using VBoxManage interface. (boinc_c0c63e7a0bf72835, slot#1)
2025-05-06 06:41:58 (14788): Successfully started VM. (PID = '4512')
2025-05-06 06:41:58 (14788): Reporting VM Process ID to BOINC.
2025-05-06 06:41:58 (14788): Guest Log: BIOS: VirtualBox 7.0.6
2025-05-06 06:41:58 (14788): Guest Log: CPUID EDX: 0x178bfbff
2025-05-06 06:41:58 (14788): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-06 06:41:58 (14788): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-06 06:41:58 (14788): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-06 06:41:58 (14788): Detected: Web Application Enabled (http://localhost:49662)
2025-05-06 06:41:58 (14788): Preference change detected
2025-05-06 06:41:58 (14788): Setting CPU throttle for VM. (100%)
2025-05-06 06:41:58 (14788): Setting network throttle for VM. (97KB)
2025-05-06 06:41:58 (14788): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-06 06:42:00 (14788): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-06 06:42:00 (14788): Guest Log: BIOS: Booting from Hard Disk...
2025-05-06 06:42:03 (14788): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-06 06:42:03 (14788): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-06 06:42:03 (14788): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-06 06:42:10 (14788): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-06 06:42:10 (14788): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-06 06:42:14 (14788): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-06 06:42:14 (14788): Guest Log: 00:00:00.000094 main     Log opened 2025-05-06T06:42:12.301859000Z
2025-05-06 06:42:14 (14788): Guest Log: 00:00:00.000153 main     OS Product: Linux
2025-05-06 06:42:14 (14788): Guest Log: 00:00:00.000177 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-06 06:42:14 (14788): Guest Log: 00:00:00.000190 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-06 06:42:14 (14788): Guest Log: 00:00:00.000213 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-06 06:42:14 (14788): Guest Log: 00:00:00.000213 main     Process ID: 1365
2025-05-06 06:42:14 (14788): Guest Log: 00:00:00.000213 main     Package type: LINUX_64BITS_GENERIC
2025-05-06 06:42:14 (14788): Guest Log: 00:00:00.000796 main     5.2.32 r132073 started. Verbose level = 0
2025-05-06 06:42:14 (14788): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-06 06:42:14 (14788): Guest Log: [INFO] Mounting shared directory
2025-05-06 06:42:14 (14788): Guest Log: [INFO] Checking for init_data.xml
2025-05-06 06:42:24 (14788): Guest Log: 00:00:10.008997 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 579 690 000ns (GuestNow=1 746 506 543 723 521 000 ns GuestLast=1 746 513 732 303 211 000 ns fSetTimeLastLoop=true )
2025-05-06 06:43:10 (14788): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-06 06:43:10 (14788): Guest Log: [INFO] Detected branch: prod
2025-05-06 06:43:10 (14788): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-06 06:43:10 (14788): Guest Log: Copying input files
2025-05-06 06:43:11 (14788): Guest Log: Copied input files into RunAtlas.
2025-05-06 06:43:11 (14788): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-06 06:43:11 (14788): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-06 06:43:11 (14788): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-06 06:43:11 (14788): Guest Log: Further information can be found at the LHC@home message board.
2025-05-06 06:43:20 (14788): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-06 06:43:20 (14788): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-06 06:43:20 (14788): Guest Log: 2.6.3.0 1667 0 32172 145662 4 1 3117345 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-06 06:43:21 (14788): Guest Log: copied the webapp to /var/www
2025-05-06 06:43:21 (14788): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-06 06:43:21 (14788): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-06 06:43:21 (14788): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-06 06:43:21 (14788): Guest Log:  *** Starting ATLAS job. (PandaID=6634334831 taskID=44506063) ***
2025-05-06 07:33:48 (14788): VM state change detected. (old = 'running', new = 'paused')
2025-05-06 07:34:08 (14788): VM state change detected. (old = 'paused', new = 'running')
2025-05-06 07:34:18 (14788): VM state change detected. (old = 'running', new = 'paused')
2025-05-06 07:34:38 (14788): VM state change detected. (old = 'paused', new = 'running')
2025-05-06 07:35:48 (14788): VM state change detected. (old = 'running', new = 'paused')
2025-05-06 07:36:08 (14788): VM state change detected. (old = 'paused', new = 'running')
2025-05-06 07:40:25 (14788): Guest Log:  *** Job finished ***
2025-05-06 07:40:25 (14788): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:11,412 | INFO     | [job] validate thread has finished
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:12,634 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:16,712 | INFO     | [data] queue_monitor thread has finished
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:18,088 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140347346966336)>', '<ExcThread(monitor, started 140346092672768)>']
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:18,929 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:18,929 | INFO     | [monitor] control thread has ended
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:23,106 | INFO     | all workflow threads have been joined
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:23,106 | INFO     | end of generic workflow (traces error code: 0)
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:23,106 | INFO     | traces error code: 0
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:23,106 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:23,152 [wrapper] ==== pilot stdout END ====
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:23,155 [wrapper] ==== wrapper stdout RESUME ====
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:23,158 [wrapper] pilotpid: 6020
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:23,162 [wrapper] Pilot exit status: 0
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:23,357 [wrapper] pandaids: 6634334831
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:23,385 [wrapper] cleanup supervisor_pilot 30879 6021
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:23,390 [wrapper] Test setup, not cleaning
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:23,393 [wrapper] apfmon messages muted
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:23,396 [wrapper] ==== wrapper stdout END ====
2025-05-06 07:40:25 (14788): Guest Log: 2025-05-06 05:39:23,398 [wrapper] ==== wrapper stderr END ====
2025-05-06 07:40:25 (14788): Guest Log:  *** Error codes and diagnostics ***
2025-05-06 07:40:25 (14788): Guest Log:     "exeErrorCode": 0,
2025-05-06 07:40:25 (14788): Guest Log:     "exeErrorDiag": "",
2025-05-06 07:40:25 (14788): Guest Log:     "pilotErrorCode": 0,
2025-05-06 07:40:25 (14788): Guest Log:     "pilotErrorDiag": "",
2025-05-06 07:40:25 (14788): Guest Log:  *** Listing of results directory ***
2025-05-06 07:40:25 (14788): Guest Log: total 194600
2025-05-06 07:40:25 (14788): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May  5 15:32 pilot3.tar.gz
2025-05-06 07:40:25 (14788): Guest Log: -rwx------. 1 atlas atlas     37140 May  5 15:53 runpilot2-wrapper.sh
2025-05-06 07:40:25 (14788): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May  5 15:53 queuedata.json
2025-05-06 07:40:25 (14788): Guest Log: -rwxr-xr-x. 1 atlas atlas      6126 May  6 04:43 init_data.xml
2025-05-06 07:40:25 (14788): Guest Log: -rwxr-xr-x. 1 atlas atlas    508870 May  6 04:43 input.tar.gz
2025-05-06 07:40:25 (14788): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May  6 04:43 start_atlas.sh
2025-05-06 07:40:25 (14788): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May  6 04:43 EVNT.44506061._000485.pool.root.1 -> /data/./ATLAS.root_0
2025-05-06 07:40:25 (14788): Guest Log: -rw-r--r--. 1 atlas atlas      2557 May  6 04:43 pandaJob.out
2025-05-06 07:40:25 (14788): Guest Log: -rw-------. 1 atlas atlas       424 May  6 04:43 setup.sh.local
2025-05-06 07:40:25 (14788): Guest Log: -rw-------. 1 atlas atlas    997387 May  6 04:44 agis_schedconf.cvmfs.json
2025-05-06 07:40:25 (14788): Guest Log: -rw-------. 1 atlas atlas   1596741 May  6 04:44 agis_ddmendpoints.agis.ALL.json
2025-05-06 07:40:25 (14788): Guest Log: drwx------. 4 atlas atlas      4096 May  6 04:44 pilot3
2025-05-06 07:40:25 (14788): Guest Log: -rw-------. 1 atlas atlas 194293618 May  6 05:38 HITS.44506063._012120.pool.root.1
2025-05-06 07:40:25 (14788): Guest Log: -rw-------. 1 atlas atlas        95 May  6 05:38 pilot_heartbeat.json
2025-05-06 07:40:25 (14788): Guest Log: -rw-------. 1 atlas atlas      1028 May  6 05:38 memory_monitor_summary.json
2025-05-06 07:40:25 (14788): Guest Log: -rw-------. 1 atlas atlas    290465 May  6 05:39 log.44506063._012120.job.log.tgz.1
2025-05-06 07:40:25 (14788): Guest Log: -rw-------. 1 atlas atlas      7715 May  6 05:39 heartbeat.json
2025-05-06 07:40:25 (14788): Guest Log: -rw-------. 1 atlas atlas      4413 May  6 05:39 pilotlog.txt
2025-05-06 07:40:25 (14788): Guest Log: -rw-------. 1 atlas atlas    310067 May  6 05:39 log.44506063._012120.job.log.1
2025-05-06 07:40:25 (14788): Guest Log: -rw-------. 1 atlas atlas       357 May  6 05:39 output.list
2025-05-06 07:40:25 (14788): Guest Log: -rw-r--r--. 1 atlas atlas       620 May  6 05:39 runtime_log
2025-05-06 07:40:25 (14788): Guest Log: -rw-------. 1 atlas atlas    624640 May  6 05:39 result.tar.gz
2025-05-06 07:40:25 (14788): Guest Log: -rw-r--r--. 1 atlas atlas     10923 May  6 05:39 runtime_log.err
2025-05-06 07:40:25 (14788): Guest Log: -rw-------. 1 atlas atlas       647 May  6 05:39 ObfKDmdJDW7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmM8FLDm274cSn.diag
2025-05-06 07:40:25 (14788): Guest Log: Looking for outputfile HITS.44506063._012120.pool.root.1
2025-05-06 07:40:25 (14788): Guest Log: HITS file was successfully produced
2025-05-06 07:40:25 (14788): Guest Log: -rw-------. 1 atlas atlas 194293618 May  6 05:38 /home/atlas/RunAtlas/HITS.44506063._012120.pool.root.1
2025-05-06 07:40:25 (14788): Guest Log: Successfully finished the ATLAS job!
2025-05-06 07:40:25 (14788): Guest Log: Copying the results back to the shared directory!
2025-05-06 07:40:25 (14788): Guest Log:  *** Contents of shared directory: ***
2025-05-06 07:40:25 (14788): Guest Log: total 409248
2025-05-06 07:40:25 (14788): Guest Log: -rwxrwxrwx. 1 root root 223607109 May  6 04:41 ATLAS.root_0
2025-05-06 07:40:25 (14788): Guest Log: -rwxrwxrwx. 1 root root 194293618 May  6  2025 HITS.pool.root.1
2025-05-06 07:40:25 (14788): Guest Log: -rwxrwxrwx. 1 root root      6126 May  6 04:41 init_data.xml
2025-05-06 07:40:25 (14788): Guest Log: -rwxrwxrwx. 1 root root    508870 May  5 18:45 input.tar.gz
2025-05-06 07:40:25 (14788): Guest Log: -rwxrwxrwx. 1 root root    624640 May  6  2025 result.tar.gz
2025-05-06 07:40:25 (14788): Guest Log: -rwxrwxrwx. 1 root root     17569 May  5 18:45 start_atlas.sh
2025-05-06 07:40:25 (14788): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-06 07:40:25 (14788): VM Completion File Detected.
2025-05-06 07:40:25 (14788): Powering off VM.
2025-05-06 07:40:26 (14788): Successfully stopped VM.
2025-05-06 07:40:26 (14788): Deregistering VM. (boinc_c0c63e7a0bf72835, slot#1)
2025-05-06 07:40:26 (14788): Removing network bandwidth throttle group from VM.
2025-05-06 07:40:26 (14788): Removing VM from VirtualBox.
07:40:31 (14788): called boinc_finish(0)

</stderr_txt>
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