Stderr output

<core_client_version>7.16.19</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-06 02:51:43 (85406): Detected: vboxwrapper 26206
2025-05-06 02:51:43 (85406): Detected: BOINC client v7.16.19
2025-05-06 02:51:43 (85406): Detected: VirtualBox VboxManage Interface (Version: 5.0.26)
2025-05-06 02:51:43 (85406): Detected: Sandbox Configuration Enabled
2025-05-06 02:51:43 (85406): Successfully copied 'init_data.xml' to the shared directory.
2025-05-06 02:51:43 (85406): Create VM. (boinc_294d843fc47b800f, slot#0)
2025-05-06 02:51:43 (85406): Setting Memory Size for VM. (4200MB)
2025-05-06 02:51:43 (85406): Setting CPU Count for VM. (2)
2025-05-06 02:51:43 (85406): Setting Chipset Options for VM.
2025-05-06 02:51:43 (85406): Setting Graphics Controller Options for VM.
2025-05-06 02:51:43 (85406): Setting Boot Options for VM.
2025-05-06 02:51:43 (85406): Setting Network Configuration for NAT.
2025-05-06 02:51:44 (85406): Enabling VM Network Access.
2025-05-06 02:51:44 (85406): Disabling USB Support for VM.
2025-05-06 02:51:44 (85406): Disabling COM Port Support for VM.
2025-05-06 02:51:44 (85406): Disabling Audio Support for VM.
2025-05-06 02:51:44 (85406): Disabling Clipboard Support for VM.
2025-05-06 02:51:44 (85406): Disabling Drag and Drop Support for VM.
2025-05-06 02:51:44 (85406): Adding storage controller(s) to VM.
2025-05-06 02:51:44 (85406): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-06 02:51:44 (85406): Adding VirtualBox Guest Additions to VM.
2025-05-06 02:51:44 (85406): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-06 02:51:44 (85406): forwarding host port 55830 to guest port 80
2025-05-06 02:51:44 (85406): Enabling remote desktop for VM.
2025-05-06 02:51:44 (85406): Required extension pack not installed, remote desktop not enabled.
2025-05-06 02:51:44 (85406): Enabling shared directory for VM.
2025-05-06 02:51:44 (85406): Starting VM using VBoxManage interface. (boinc_294d843fc47b800f, slot#0)
2025-05-06 02:51:46 (85406): Successfully started VM. (PID = '85473')
2025-05-06 02:51:46 (85406): Reporting VM Process ID to BOINC.
2025-05-06 02:51:46 (85406): Guest Log: BIOS: VirtualBox 5.0.26
2025-05-06 02:51:46 (85406): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-06 02:51:46 (85406): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-06 02:51:46 (85406): Detected: Web Application Enabled (http://localhost:55830)
2025-05-06 02:51:46 (85406): Preference change detected
2025-05-06 02:51:46 (85406): Setting CPU throttle for VM. (90%)
2025-05-06 02:51:46 (85406): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-06 02:51:48 (85406): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-06 02:51:48 (85406): Guest Log: BIOS: Booting from Hard Disk...
2025-05-06 02:51:51 (85406): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-06 02:51:51 (85406): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-06 02:51:51 (85406): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-06 02:51:57 (85406): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-06 02:51:57 (85406): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-06 02:52:08 (85406): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-06 02:52:08 (85406): Guest Log: 00:00:00.000249 main     Log opened 2025-05-06T00:52:05.604746000Z
2025-05-06 02:52:08 (85406): Guest Log: 00:00:00.000383 main     OS Product: Linux
2025-05-06 02:52:08 (85406): Guest Log: 00:00:00.000441 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-06 02:52:08 (85406): Guest Log: 00:00:00.000493 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-06 02:52:08 (85406): Guest Log: 00:00:00.000545 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-06 02:52:08 (85406): Guest Log: 00:00:00.000546 main     Process ID: 1284
2025-05-06 02:52:08 (85406): Guest Log: 00:00:00.000547 main     Package type: LINUX_64BITS_GENERIC
2025-05-06 02:52:08 (85406): Guest Log: 00:00:00.002253 main     5.2.32 r132073 started. Verbose level = 0
2025-05-06 02:52:08 (85406): Guest Log: 00:00:00.003950 main     Error: Service 'control' failed to initialize: VERR_INVALID_PARAMETER
2025-05-06 02:52:08 (85406): Guest Log: 00:00:00.004129 main     Session 0 is about to close ...
2025-05-06 02:52:08 (85406): Guest Log: 00:00:00.004190 main     Stopping all guest processes ...
2025-05-06 02:52:08 (85406): Guest Log: 00:00:00.004253 main     Closing all guest files ...
2025-05-06 02:52:08 (85406): Guest Log: 00:00:00.004915 main     Ended.
2025-05-06 02:52:08 (85406): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-06 02:52:08 (85406): Guest Log: [INFO] Mounting shared directory
2025-05-06 02:52:08 (85406): Guest Log: [INFO] Checking for init_data.xml
2025-05-06 02:52:17 (85406): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-06 02:52:17 (85406): Guest Log: [INFO] Detected branch: prod
2025-05-06 02:52:17 (85406): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-06 02:52:17 (85406): Guest Log: Copying input files
2025-05-06 02:52:19 (85406): Guest Log: Copied input files into RunAtlas.
2025-05-06 02:52:19 (85406): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-06 02:52:19 (85406): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-06 02:52:19 (85406): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-06 02:52:19 (85406): Guest Log: Further information can be found at the LHC@home message board.
2025-05-06 02:52:48 (85406): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-06 02:52:54 (85406): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-06 02:52:54 (85406): Guest Log: 2.6.3.0 1554 0 32104 145655 4 1 3117345 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-06 02:52:55 (85406): Guest Log: copied the webapp to /var/www
2025-05-06 02:52:55 (85406): Guest Log: ATHENA_PROC_NUMBER=2
2025-05-06 02:52:55 (85406): Guest Log: ATHENA_CORE_NUMBER=2
2025-05-06 02:52:55 (85406): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-06 02:52:55 (85406): Guest Log:  *** Starting ATLAS job. (PandaID=6634257660 taskID=44506063) ***
2025-05-06 04:31:20 (85406): Status Report: Elapsed Time: '6000.000000'
2025-05-06 04:31:20 (85406): Status Report: CPU Time: '9294.890000'
2025-05-06 06:10:54 (85406): Status Report: Elapsed Time: '12000.000000'
2025-05-06 06:10:54 (85406): Status Report: CPU Time: '19923.700000'
2025-05-06 07:50:28 (85406): Status Report: Elapsed Time: '18000.000000'
2025-05-06 07:50:28 (85406): Status Report: CPU Time: '30553.580000'
2025-05-06 09:30:02 (85406): Status Report: Elapsed Time: '24000.000000'
2025-05-06 09:30:02 (85406): Status Report: CPU Time: '41183.240000'
2025-05-06 11:09:37 (85406): Status Report: Elapsed Time: '30000.000000'
2025-05-06 11:09:37 (85406): Status Report: CPU Time: '51814.350000'
2025-05-06 12:18:58 (85406): Guest Log:  *** Job finished ***
2025-05-06 12:18:58 (85406): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:43,954 | INFO     | [data] queue_monitor thread has finished
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:47,936 | INFO     | job.realtimelogging is not enabled
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:48,939 | INFO     | [payload] run_realtimelog thread has finished
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:51,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139990992860992)>', '<ExcThread(monitor, started 139990415693568)>']
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:51,708 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:51,708 | INFO     | [monitor] control thread has ended
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:56,057 | INFO     | all workflow threads have been joined
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:56,058 | INFO     | end of generic workflow (traces error code: 0)
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:56,059 | INFO     | traces error code: 0
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:56,059 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:56,191 [wrapper] ==== pilot stdout END ====
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:56,201 [wrapper] ==== wrapper stdout RESUME ====
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:56,209 [wrapper] pilotpid: 5851
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:56,216 [wrapper] Pilot exit status: 0
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:56,311 [wrapper] pandaids: 6634257660
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:56,363 [wrapper] cleanup supervisor_pilot 13431 5852
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:56,374 [wrapper] Test setup, not cleaning
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:56,381 [wrapper] apfmon messages muted
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:56,389 [wrapper] ==== wrapper stdout END ====
2025-05-06 12:18:58 (85406): Guest Log: 2025-05-06 10:18:56,396 [wrapper] ==== wrapper stderr END ====
2025-05-06 12:18:58 (85406): Guest Log:  *** Error codes and diagnostics ***
2025-05-06 12:18:58 (85406): Guest Log:     "exeErrorCode": 0,
2025-05-06 12:18:58 (85406): Guest Log:     "exeErrorDiag": "",
2025-05-06 12:18:58 (85406): Guest Log:     "pilotErrorCode": 0,
2025-05-06 12:18:58 (85406): Guest Log:     "pilotErrorDiag": "",
2025-05-06 12:18:58 (85406): Guest Log:  *** Listing of results directory ***
2025-05-06 12:18:58 (85406): Guest Log: total 196924
2025-05-06 12:18:58 (85406): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May  5 12:26 pilot3.tar.gz
2025-05-06 12:18:58 (85406): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May  5 12:50 queuedata.json
2025-05-06 12:18:58 (85406): Guest Log: -rwx------. 1 atlas atlas     37140 May  5 12:51 runpilot2-wrapper.sh
2025-05-06 12:18:58 (85406): Guest Log: -rw-r--r--. 1 atlas atlas      8379 May  6 00:52 init_data.xml
2025-05-06 12:18:58 (85406): Guest Log: -rw-r-----. 1 atlas atlas    508878 May  6 00:52 input.tar.gz
2025-05-06 12:18:58 (85406): Guest Log: -rw-r-----. 1 atlas atlas     17569 May  6 00:52 start_atlas.sh
2025-05-06 12:18:58 (85406): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May  6 00:52 EVNT.44506061._000392.pool.root.1 -> /data/./ATLAS.root_0
2025-05-06 12:18:58 (85406): Guest Log: -rw-r--r--. 1 atlas atlas      2554 May  6 00:52 pandaJob.out
2025-05-06 12:18:58 (85406): Guest Log: -rw-------. 1 atlas atlas       424 May  6 00:52 setup.sh.local
2025-05-06 12:18:58 (85406): Guest Log: -rw-------. 1 atlas atlas    997468 May  6 00:53 agis_schedconf.cvmfs.json
2025-05-06 12:18:58 (85406): Guest Log: drwx------. 4 atlas atlas      4096 May  6 00:53 pilot3
2025-05-06 12:18:58 (85406): Guest Log: -rw-------. 1 atlas atlas 191170413 May  6 10:17 HITS.44506063._009791.pool.root.1
2025-05-06 12:18:58 (85406): Guest Log: -rw-------. 1 atlas atlas      1031 May  6 10:18 memory_monitor_summary.json
2025-05-06 12:18:58 (85406): Guest Log: -rw-------. 1 atlas atlas   1596741 May  6 10:18 agis_ddmendpoints.agis.ALL.json
2025-05-06 12:18:58 (85406): Guest Log: -rw-------. 1 atlas atlas    468928 May  6 10:18 log.44506063._009791.job.log.tgz.1
2025-05-06 12:18:58 (85406): Guest Log: -rw-------. 1 atlas atlas        95 May  6 10:18 pilot_heartbeat.json
2025-05-06 12:18:58 (85406): Guest Log: -rw-------. 1 atlas atlas      7715 May  6 10:18 heartbeat.json
2025-05-06 12:18:58 (85406): Guest Log: -rw-------. 1 atlas atlas      4608 May  6 10:18 pilotlog.txt
2025-05-06 12:18:58 (85406): Guest Log: -rw-------. 1 atlas atlas   2877343 May  6 10:18 log.44506063._009791.job.log.1
2025-05-06 12:18:58 (85406): Guest Log: -rw-------. 1 atlas atlas       357 May  6 10:18 output.list
2025-05-06 12:18:58 (85406): Guest Log: -rw-r--r--. 1 atlas atlas       620 May  6 10:18 runtime_log
2025-05-06 12:18:58 (85406): Guest Log: -rw-------. 1 atlas atlas   3368960 May  6 10:18 result.tar.gz
2025-05-06 12:18:58 (85406): Guest Log: -rw-r--r--. 1 atlas atlas     10963 May  6 10:18 runtime_log.err
2025-05-06 12:18:58 (85406): Guest Log: -rw-------. 1 atlas atlas       667 May  6 10:18 iOALDmtSAW7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmjc1LDmidyPFo.diag
2025-05-06 12:18:58 (85406): Guest Log: Looking for outputfile HITS.44506063._009791.pool.root.1
2025-05-06 12:18:58 (85406): Guest Log: HITS file was successfully produced
2025-05-06 12:18:58 (85406): Guest Log: -rw-------. 1 atlas atlas 191170413 May  6 10:17 /home/atlas/RunAtlas/HITS.44506063._009791.pool.root.1
2025-05-06 12:18:58 (85406): Guest Log: Successfully finished the ATLAS job!
2025-05-06 12:18:58 (85406): Guest Log: Copying the results back to the shared directory!
2025-05-06 12:18:58 (85406): Guest Log:  *** Contents of shared directory: ***
2025-05-06 12:18:58 (85406): Guest Log: total 221748
2025-05-06 12:18:58 (85406): Guest Log: -rw-rw----. 1 root root 223150274 May  6 00:51 ATLAS.root_0
2025-05-06 12:18:58 (85406): Guest Log: -rw-rw-r--. 1 root root      8379 May  6 00:51 init_data.xml
2025-05-06 12:18:58 (85406): Guest Log: -rw-rw----. 1 root root    508878 May  6 00:51 input.tar.gz
2025-05-06 12:18:58 (85406): Guest Log: -rw-r--r--. 1 root root   3368960 May  6 10:18 result.tar.gz
2025-05-06 12:18:58 (85406): Guest Log: -rw-rw----. 1 root root     17569 May  6 00:51 start_atlas.sh
2025-05-06 12:18:58 (85406): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-06 12:18:58 (85406): VM Completion File Detected.
2025-05-06 12:18:58 (85406): Powering off VM.
2025-05-06 12:18:59 (85406): Successfully stopped VM.
2025-05-06 12:18:59 (85406): Deregistering VM. (boinc_294d843fc47b800f, slot#0)
2025-05-06 12:18:59 (85406): Removing network bandwidth throttle group from VM.
2025-05-06 12:18:59 (85406): Removing VM from VirtualBox.
12:19:04 (85406): called boinc_finish(0)

</stderr_txt>
]]>

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