Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-07 06:43:24 (3520): Detected: vboxwrapper 26206
2025-05-07 06:43:24 (3520): Detected: BOINC client v8.0.2
2025-05-07 06:43:24 (3520): Detected: VirtualBox VboxManage Interface (Version: 6.1.2)
2025-05-07 06:43:25 (3520): Successfully copied 'init_data.xml' to the shared directory.
2025-05-07 06:43:25 (3520): Create VM. (boinc_cb12806fdf2ce361, slot#3)
2025-05-07 06:43:26 (3520): Setting Memory Size for VM. (4400MB)
2025-05-07 06:43:26 (3520): Setting CPU Count for VM. (4)
2025-05-07 06:43:26 (3520): Setting Chipset Options for VM.
2025-05-07 06:43:27 (3520): Setting Graphics Controller Options for VM.
2025-05-07 06:43:27 (3520): Setting Boot Options for VM.
2025-05-07 06:43:27 (3520): Setting Network Configuration for NAT.
2025-05-07 06:43:28 (3520): Enabling VM Network Access.
2025-05-07 06:43:28 (3520): Disabling USB Support for VM.
2025-05-07 06:43:28 (3520): Disabling COM Port Support for VM.
2025-05-07 06:43:28 (3520): Disabling LPT Port Support for VM.
2025-05-07 06:43:29 (3520): Disabling Audio Support for VM.
2025-05-07 06:43:29 (3520): Disabling Clipboard Support for VM.
2025-05-07 06:43:30 (3520): Disabling Drag and Drop Support for VM.
2025-05-07 06:43:30 (3520): Adding storage controller(s) to VM.
2025-05-07 06:43:30 (3520): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-07 06:43:31 (3520): Adding VirtualBox Guest Additions to VM.
2025-05-07 06:43:31 (3520): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-07 06:43:31 (3520): forwarding host port 64065 to guest port 80
2025-05-07 06:43:32 (3520): Enabling remote desktop for VM.
2025-05-07 06:43:32 (3520): Required extension pack not installed, remote desktop not enabled.
2025-05-07 06:43:32 (3520): Enabling shared directory for VM.
2025-05-07 06:43:32 (3520): Starting VM using VBoxManage interface. (boinc_cb12806fdf2ce361, slot#3)
2025-05-07 06:43:36 (3520): Successfully started VM. (PID = '14824')
2025-05-07 06:43:36 (3520): Reporting VM Process ID to BOINC.
2025-05-07 06:43:36 (3520): Guest Log: BIOS: VirtualBox 6.1.2
2025-05-07 06:43:36 (3520): Guest Log: CPUID EDX: 0x178bfbff
2025-05-07 06:43:36 (3520): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-07 06:43:36 (3520): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-07 06:43:36 (3520): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-07 06:43:37 (3520): Detected: Web Application Enabled (http://localhost:64065)
2025-05-07 06:43:37 (3520): Preference change detected
2025-05-07 06:43:37 (3520): Setting CPU throttle for VM. (90%)
2025-05-07 06:43:37 (3520): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-07 06:43:39 (3520): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-07 06:43:39 (3520): Guest Log: BIOS: Booting from Hard Disk...
2025-05-07 06:43:42 (3520): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-07 06:43:42 (3520): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-07 06:43:42 (3520): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-07 06:43:53 (3520): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-07 06:43:53 (3520): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-07 06:44:04 (3520): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-07 06:44:04 (3520): Guest Log: 00:00:00.000125 main     Log opened 2025-05-07T06:44:01.912352000Z
2025-05-07 06:44:04 (3520): Guest Log: 00:00:00.000202 main     OS Product: Linux
2025-05-07 06:44:04 (3520): Guest Log: 00:00:00.000229 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-07 06:44:04 (3520): Guest Log: 00:00:00.000251 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-07 06:44:04 (3520): Guest Log: 00:00:00.000274 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-07 06:44:04 (3520): Guest Log: 00:00:00.000274 main     Process ID: 1302
2025-05-07 06:44:04 (3520): Guest Log: 00:00:00.000275 main     Package type: LINUX_64BITS_GENERIC
2025-05-07 06:44:04 (3520): Guest Log: 00:00:00.002357 main     5.2.32 r132073 started. Verbose level = 0
2025-05-07 06:44:05 (3520): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-07 06:44:05 (3520): Guest Log: [INFO] Mounting shared directory
2025-05-07 06:44:05 (3520): Guest Log: [INFO] Checking for init_data.xml
2025-05-07 06:44:14 (3520): Guest Log: 00:00:10.019580 timesync vgsvcTimeSyncWorker: Radical guest time change: -34 188 363 999 000ns (GuestNow=1 746 566 053 552 393 000 ns GuestLast=1 746 600 241 916 392 000 ns fSetTimeLastLoop=true )
2025-05-07 06:44:16 (3520): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-07 06:44:16 (3520): Guest Log: [INFO] Detected branch: prod
2025-05-07 06:44:17 (3520): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-07 06:44:17 (3520): Guest Log: Copying input files
2025-05-07 06:44:20 (3520): Guest Log: Copied input files into RunAtlas.
2025-05-07 06:44:20 (3520): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-07 06:44:20 (3520): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-07 06:44:20 (3520): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-07 06:44:20 (3520): Guest Log: Further information can be found at the LHC@home message board.
2025-05-07 06:44:37 (3520): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-07 06:44:37 (3520): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-07 06:44:37 (3520): Guest Log: 2.6.3.0 1598 0 32168 145689 4 1 3117346 4096000 0 65024 0 0 n/a 1 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-07 06:44:40 (3520): Guest Log: copied the webapp to /var/www
2025-05-07 06:44:40 (3520): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-07 06:44:40 (3520): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-07 06:44:41 (3520): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-07 06:44:41 (3520): Guest Log:  *** Starting ATLAS job. (PandaID=6634197377 taskID=44506063) ***
2025-05-07 08:23:40 (3520): Status Report: Elapsed Time: '6000.000000'
2025-05-07 08:23:40 (3520): Status Report: CPU Time: '15679.328125'
2025-05-07 10:03:44 (3520): Status Report: Elapsed Time: '12000.000000'
2025-05-07 10:03:44 (3520): Status Report: CPU Time: '37294.562500'
2025-05-07 10:31:30 (3520): Guest Log:  *** Job finished ***
2025-05-07 10:31:30 (3520): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:19,431 | INFO     | [data] copytool_in thread has finished
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:20,696 | INFO     | [data] copytool_out thread has finished
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:21,449 | INFO     | [data] queue_monitor thread has finished
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:21,819 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140563735598912)>', '<ExcThread(monitor, started 140562913019648)>']
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:22,278 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:22,279 | INFO     | [monitor] control thread has ended
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:26,866 | INFO     | all workflow threads have been joined
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:26,866 | INFO     | end of generic workflow (traces error code: 0)
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:26,867 | INFO     | traces error code: 0
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:26,867 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:27,336 [wrapper] ==== pilot stdout END ====
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:27,340 [wrapper] ==== wrapper stdout RESUME ====
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:27,345 [wrapper] pilotpid: 5934
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:27,349 [wrapper] Pilot exit status: 0
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:27,951 [wrapper] pandaids: 6634197377
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:27,980 [wrapper] cleanup supervisor_pilot 10986 5935
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:27,986 [wrapper] Test setup, not cleaning
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:27,991 [wrapper] apfmon messages muted
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:27,996 [wrapper] ==== wrapper stdout END ====
2025-05-07 10:31:30 (3520): Guest Log: 2025-05-07 01:01:28,000 [wrapper] ==== wrapper stderr END ====
2025-05-07 10:31:30 (3520): Guest Log:  *** Error codes and diagnostics ***
2025-05-07 10:31:30 (3520): Guest Log:     "exeErrorCode": 0,
2025-05-07 10:31:30 (3520): Guest Log:     "exeErrorDiag": "",
2025-05-07 10:31:30 (3520): Guest Log:     "pilotErrorCode": 0,
2025-05-07 10:31:30 (3520): Guest Log:     "pilotErrorDiag": "",
2025-05-07 10:31:30 (3520): Guest Log:  *** Listing of results directory ***
2025-05-07 10:31:30 (3520): Guest Log: total 204840
2025-05-07 10:31:30 (3520): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May  5 09:32 pilot3.tar.gz
2025-05-07 10:31:30 (3520): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May  5 09:50 queuedata.json
2025-05-07 10:31:30 (3520): Guest Log: -rwx------. 1 atlas atlas     37140 May  5 09:50 runpilot2-wrapper.sh
2025-05-07 10:31:30 (3520): Guest Log: -rwxr-xr-x. 1 atlas atlas      6358 May  6 21:14 init_data.xml
2025-05-07 10:31:30 (3520): Guest Log: -rwxr-xr-x. 1 atlas atlas    508877 May  6 21:14 input.tar.gz
2025-05-07 10:31:30 (3520): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May  6 21:14 start_atlas.sh
2025-05-07 10:31:30 (3520): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May  6 21:14 EVNT.44506061._000305.pool.root.1 -> /data/./ATLAS.root_0
2025-05-07 10:31:30 (3520): Guest Log: -rw-r--r--. 1 atlas atlas      2554 May  6 21:14 pandaJob.out
2025-05-07 10:31:30 (3520): Guest Log: -rw-------. 1 atlas atlas       424 May  6 21:14 setup.sh.local
2025-05-07 10:31:30 (3520): Guest Log: -rw-------. 1 atlas atlas    998316 May  6 21:17 agis_schedconf.cvmfs.json
2025-05-07 10:31:30 (3520): Guest Log: drwx------. 4 atlas atlas      4096 May  6 21:17 pilot3
2025-05-07 10:31:30 (3520): Guest Log: -rw-------. 1 atlas atlas 203112202 May  7 01:00 HITS.44506063._007609.pool.root.1
2025-05-07 10:31:30 (3520): Guest Log: -rw-------. 1 atlas atlas        95 May  7 01:00 pilot_heartbeat.json
2025-05-07 10:31:30 (3520): Guest Log: -rw-------. 1 atlas atlas      1033 May  7 01:00 memory_monitor_summary.json
2025-05-07 10:31:30 (3520): Guest Log: -rw-------. 1 atlas atlas   1596741 May  7 01:01 agis_ddmendpoints.agis.ALL.json
2025-05-07 10:31:30 (3520): Guest Log: -rw-------. 1 atlas atlas    312857 May  7 01:01 log.44506063._007609.job.log.tgz.1
2025-05-07 10:31:30 (3520): Guest Log: -rw-------. 1 atlas atlas      7721 May  7 01:01 heartbeat.json
2025-05-07 10:31:30 (3520): Guest Log: -rw-------. 1 atlas atlas      4413 May  7 01:01 pilotlog.txt
2025-05-07 10:31:30 (3520): Guest Log: -rw-------. 1 atlas atlas   1126076 May  7 01:01 log.44506063._007609.job.log.1
2025-05-07 10:31:30 (3520): Guest Log: -rw-------. 1 atlas atlas       357 May  7 01:01 output.list
2025-05-07 10:31:30 (3520): Guest Log: -rw-r--r--. 1 atlas atlas       620 May  7 01:01 runtime_log
2025-05-07 10:31:30 (3520): Guest Log: -rw-------. 1 atlas atlas   1454080 May  7 01:01 result.tar.gz
2025-05-07 10:31:30 (3520): Guest Log: -rw-r--r--. 1 atlas atlas     10972 May  7 01:01 runtime_log.err
2025-05-07 10:31:30 (3520): Guest Log: -rw-------. 1 atlas atlas       668 May  7 01:01 gmwMDmMe7V7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmwA1LDmQApdEn.diag
2025-05-07 10:31:30 (3520): Guest Log: Looking for outputfile HITS.44506063._007609.pool.root.1
2025-05-07 10:31:30 (3520): Guest Log: HITS file was successfully produced
2025-05-07 10:31:30 (3520): Guest Log: -rw-------. 1 atlas atlas 203112202 May  7 01:00 /home/atlas/RunAtlas/HITS.44506063._007609.pool.root.1
2025-05-07 10:31:32 (3520): Guest Log: Successfully finished the ATLAS job!
2025-05-07 10:31:32 (3520): Guest Log: Copying the results back to the shared directory!
2025-05-07 10:31:32 (3520): Guest Log:  *** Contents of shared directory: ***
2025-05-07 10:31:32 (3520): Guest Log: total 419464
2025-05-07 10:31:32 (3520): Guest Log: -rwxrwxrwx. 1 root root 224420274 May  6 21:13 ATLAS.root_0
2025-05-07 10:31:32 (3520): Guest Log: -rwxrwxrwx. 1 root root 203112202 May  7  2025 HITS.pool.root.1
2025-05-07 10:31:32 (3520): Guest Log: -rwxrwxrwx. 1 root root      6358 May  6 21:13 init_data.xml
2025-05-07 10:31:32 (3520): Guest Log: -rwxrwxrwx. 1 root root    508877 May  5 15:04 input.tar.gz
2025-05-07 10:31:32 (3520): Guest Log: -rwxrwxrwx. 1 root root   1454080 May  7  2025 result.tar.gz
2025-05-07 10:31:32 (3520): Guest Log: -rwxrwxrwx. 1 root root     17569 May  5 15:04 start_atlas.sh
2025-05-07 10:31:32 (3520): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-07 10:31:32 (3520): VM Completion File Detected.
2025-05-07 10:31:32 (3520): Powering off VM.
2025-05-07 10:31:33 (3520): Successfully stopped VM.
2025-05-07 10:31:33 (3520): Deregistering VM. (boinc_cb12806fdf2ce361, slot#3)
2025-05-07 10:31:33 (3520): Removing network bandwidth throttle group from VM.
2025-05-07 10:31:33 (3520): Removing VM from VirtualBox.
10:31:38 (3520): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN