Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:38:21 (16127): wrapper (7.7.26015): starting
22:38:21 (16127): wrapper: running run_atlas (--nthreads 8)
[2025-05-05 22:38:21] Arguments: --nthreads 8
[2025-05-05 22:38:21] Threads: 8
[2025-05-05 22:38:21] Checking for CVMFS
[2025-05-05 22:38:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-05 22:38:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-05 22:38:21] Running cvmfs_config stat atlas.cern.ch
[2025-05-05 22:38:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-05 22:38:21] 2.11.2.0 3243 818 77276 145648 0 140 16548919 25165825 779 130560 0 2041565 99.672 541191 909 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-05 22:38:21] CVMFS is ok
[2025-05-05 22:38:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-05 22:38:21] Checking for apptainer binary...
[2025-05-05 22:38:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-05 22:38:21] Running /usr/bin/apptainer --version
[2025-05-05 22:38:21] apptainer version 1.3.2-1.el7
[2025-05-05 22:38:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-05 22:38:23] cg-vwn424.simple-grid.lan
[2025-05-05 22:38:23] apptainer works
[2025-05-05 22:38:23] Set ATHENA_PROC_NUMBER=8
[2025-05-05 22:38:23] Set ATHENA_CORE_NUMBER=8
[2025-05-05 22:38:23] Starting ATLAS job with PandaID=6634200004
[2025-05-05 22:38:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-06 05:14:54]  *** The last 200 lines of the pilot log: ***
[2025-05-06 05:14:54] 2025-05-06 01:56:09,188 | INFO     | mean y: 2400126.768707483
[2025-05-06 05:14:54] 2025-05-06 01:56:09,188 | INFO     | -- intersect: -61561674062.70983
[2025-05-06 05:14:54] 2025-05-06 01:56:09,188 | INFO     | intersect: -61561674062.70983
[2025-05-06 05:14:54] 2025-05-06 01:56:09,189 | INFO     | chi2: 8.981554349099378
[2025-05-06 05:14:54] 2025-05-06 01:56:09,189 | INFO     | current chi2=8.981554349099378 (change=7.541158768432565 %)
[2025-05-06 05:14:54] 2025-05-06 01:56:09,189 | INFO     | right removable region: 293
[2025-05-06 05:14:54] 2025-05-06 01:56:09,190 | INFO     | sum of square deviations: 7879803557.5
[2025-05-06 05:14:54] 2025-05-06 01:56:09,192 | INFO     | sum of deviations: 162179607764.5
[2025-05-06 05:14:54] 2025-05-06 01:56:09,193 | INFO     | mean x: 1746487486.5
[2025-05-06 05:14:54] 2025-05-06 01:56:09,193 | INFO     | mean y: 2432188.044217687
[2025-05-06 05:14:54] 2025-05-06 01:56:09,193 | INFO     | -- intersect: -35943217149.442764
[2025-05-06 05:14:54] 2025-05-06 01:56:09,193 | INFO     | intersect: -35943217149.442764
[2025-05-06 05:14:54] 2025-05-06 01:56:09,193 | INFO     | chi2: 4.948539017416797
[2025-05-06 05:14:54] 2025-05-06 01:56:09,193 | INFO     | current chi2=4.948539017416797 (change=49.05824030498289 %)
[2025-05-06 05:14:54] 2025-05-06 01:56:09,194 | INFO     | sum of square deviations: 7484568240.0
[2025-05-06 05:14:54] 2025-05-06 01:56:09,197 | INFO     | sum of deviations: 90017577146.0
[2025-05-06 05:14:54] 2025-05-06 01:56:09,197 | INFO     | mean x: 1746487639.0
[2025-05-06 05:14:54] 2025-05-06 01:56:09,197 | INFO     | mean y: 2459995.809688581
[2025-05-06 05:14:54] 2025-05-06 01:56:09,197 | INFO     | -- intersect: -21002704328.567947
[2025-05-06 05:14:54] 2025-05-06 01:56:09,197 | INFO     | intersect: -21002704328.567947
[2025-05-06 05:14:54] 2025-05-06 01:56:09,198 | INFO     | chi2: 2.656376269891925
[2025-05-06 05:14:54] 2025-05-06 01:56:09,198 | INFO     | current chi2=2.656376269891925 (change=46.319989383885094 %)
[2025-05-06 05:14:54] 2025-05-06 01:56:09,198 | INFO     | sum of square deviations: 7102775035.0
[2025-05-06 05:14:54] 2025-05-06 01:56:09,201 | INFO     | sum of deviations: 35924689496.0
[2025-05-06 05:14:54] 2025-05-06 01:56:09,201 | INFO     | mean x: 1746487791.5
[2025-05-06 05:14:54] 2025-05-06 01:56:09,202 | INFO     | mean y: 2481596.732394366
[2025-05-06 05:14:54] 2025-05-06 01:56:09,202 | INFO     | -- intersect: -8830971709.759987
[2025-05-06 05:14:54] 2025-05-06 01:56:09,202 | INFO     | intersect: -8830971709.759987
[2025-05-06 05:14:54] 2025-05-06 01:56:09,202 | INFO     | chi2: 1.4290565082319076
[2025-05-06 05:14:54] 2025-05-06 01:56:09,202 | INFO     | current chi2=1.4290565082319076 (change=46.20278292540052 %)
[2025-05-06 05:14:54] 2025-05-06 01:56:09,203 | INFO     | sum of square deviations: 6734191380.0
[2025-05-06 05:14:54] 2025-05-06 01:56:09,206 | INFO     | sum of deviations: 1073513745.9999962
[2025-05-06 05:14:54] 2025-05-06 01:56:09,206 | INFO     | mean x: 1746487944.0
[2025-05-06 05:14:54] 2025-05-06 01:56:09,206 | INFO     | mean y: 2495951.853046595
[2025-05-06 05:14:54] 2025-05-06 01:56:09,206 | INFO     | -- intersect: -275915918.15639645
[2025-05-06 05:14:54] 2025-05-06 01:56:09,206 | INFO     | intersect: -275915918.15639645
[2025-05-06 05:14:54] 2025-05-06 01:56:09,207 | INFO     | chi2: 0.8070996664070158
[2025-05-06 05:14:54] 2025-05-06 01:56:09,207 | INFO     | current chi2=0.8070996664070158 (change=43.52220071370057 %)
[2025-05-06 05:14:54] 2025-05-06 01:56:09,207 | INFO     | sum of square deviations: 6378584712.5
[2025-05-06 05:14:54] 2025-05-06 01:56:09,210 | INFO     | sum of deviations: -196857400.5000038
[2025-05-06 05:14:54] 2025-05-06 01:56:09,210 | INFO     | mean x: 1746488096.5
[2025-05-06 05:14:54] 2025-05-06 01:56:09,210 | INFO     | mean y: 2496490.8795620436
[2025-05-06 05:14:54] 2025-05-06 01:56:09,210 | INFO     | -- intersect: 56397022.451625854
[2025-05-06 05:14:54] 2025-05-06 01:56:09,210 | INFO     | intersect: 56397022.451625854
[2025-05-06 05:14:54] 2025-05-06 01:56:09,211 | INFO     | chi2: 0.7970244601386645
[2025-05-06 05:14:54] 2025-05-06 01:56:09,211 | INFO     | current chi2=0.7970244601386645 (change=1.2483224424070662 %)
[2025-05-06 05:14:54] 2025-05-06 01:56:09,211 | INFO     | left removable region: 50
[2025-05-06 05:14:54] 2025-05-06 01:56:09,212 | INFO     | sum of square deviations: 4449281562.0
[2025-05-06 05:14:54] 2025-05-06 01:56:09,213 | INFO     | sum of deviations: 7697287989.0
[2025-05-06 05:14:54] 2025-05-06 01:56:09,214 | INFO     | mean x: 1746488676.0
[2025-05-06 05:14:54] 2025-05-06 01:56:09,214 | INFO     | mean y: 2509229.827160494
[2025-05-06 05:14:54] 2025-05-06 01:56:09,214 | INFO     | -- intersect: -3018928303.709476
[2025-05-06 05:14:54] 2025-05-06 01:56:09,214 | INFO     | intersect: -3018928303.709476
[2025-05-06 05:14:54] 2025-05-06 01:56:09,214 | INFO     | chi2: 0.0016410033212737793
[2025-05-06 05:14:54] 2025-05-06 01:56:09,214 | INFO     | -- intersect: -3018928303.709476
[2025-05-06 05:14:54] 2025-05-06 01:56:09,215 | INFO     | current memory leak: 1.73 B/s (using 243 data points, chi2=0.00)
[2025-05-06 05:14:54] 2025-05-06 01:56:09,215 | INFO     | ..............................
[2025-05-06 05:14:54] 2025-05-06 01:56:09,215 | INFO     | . Timing measurements:
[2025-05-06 05:14:54] 2025-05-06 01:56:09,215 | INFO     | . get job = 0 s
[2025-05-06 05:14:54] 2025-05-06 01:56:09,216 | INFO     | . initial setup = 6 s
[2025-05-06 05:14:54] 2025-05-06 01:56:09,216 | INFO     | . payload setup = 151 s
[2025-05-06 05:14:54] 2025-05-06 01:56:09,216 | INFO     | . stage-in = 0 s
[2025-05-06 05:14:54] 2025-05-06 01:56:09,216 | INFO     | . payload execution = 18380 s
[2025-05-06 05:14:54] 2025-05-06 01:56:09,216 | INFO     | . stage-out = 3 s
[2025-05-06 05:14:54] 2025-05-06 01:56:09,216 | INFO     | . log creation = 1 s
[2025-05-06 05:14:54] 2025-05-06 01:56:09,216 | INFO     | ..............................
[2025-05-06 05:14:54] 2025-05-06 01:56:09,375 | INFO     | 
[2025-05-06 05:14:54] 2025-05-06 01:56:09,376 | INFO     | job summary report
[2025-05-06 05:14:54] 2025-05-06 01:56:09,376 | INFO     | --------------------------------------------------
[2025-05-06 05:14:54] 2025-05-06 01:56:09,376 | INFO     | PanDA job id: 6634200004
[2025-05-06 05:14:54] 2025-05-06 01:56:09,376 | INFO     | task id: 44506063
[2025-05-06 05:14:54] 2025-05-06 01:56:09,376 | INFO     | errors: (none)
[2025-05-06 05:14:54] 2025-05-06 01:56:09,376 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-06 05:14:54] 2025-05-06 01:56:09,376 | INFO     | pilot state: finished 
[2025-05-06 05:14:54] 2025-05-06 01:56:09,376 | INFO     | transexitcode: 0
[2025-05-06 05:14:54] 2025-05-06 01:56:09,377 | INFO     | exeerrorcode: 0
[2025-05-06 05:14:54] 2025-05-06 01:56:09,377 | INFO     | exeerrordiag: 
[2025-05-06 05:14:54] 2025-05-06 01:56:09,377 | INFO     | exitcode: 0
[2025-05-06 05:14:54] 2025-05-06 01:56:09,377 | INFO     | exitmsg: OK
[2025-05-06 05:14:54] 2025-05-06 01:56:09,377 | INFO     | cpuconsumptiontime: 64561 s
[2025-05-06 05:14:54] 2025-05-06 01:56:09,377 | INFO     | nevents: 400
[2025-05-06 05:14:54] 2025-05-06 01:56:09,377 | INFO     | neventsw: 0
[2025-05-06 05:14:54] 2025-05-06 01:56:09,377 | INFO     | pid: 26333
[2025-05-06 05:14:54] 2025-05-06 01:56:09,377 | INFO     | pgrp: 26333
[2025-05-06 05:14:54] 2025-05-06 01:56:09,378 | INFO     | corecount: 8
[2025-05-06 05:14:54] 2025-05-06 01:56:09,378 | INFO     | event service: False
[2025-05-06 05:14:54] 2025-05-06 01:56:09,378 | INFO     | sizes: {0: 2393561, 1: 2393760, 12: 2393760, 23: 2393788, 34: 2393816, 44: 2393844, 55: 2394000, 66: 2394028, 77: 2394056, 87: 2394112, 98: 2394140, 109: 2394448, 
[2025-05-06 05:14:54] 2025-05-06 01:56:09,378 | INFO     | --------------------------------------------------
[2025-05-06 05:14:54] 2025-05-06 01:56:09,378 | INFO     | 
[2025-05-06 05:14:54] 2025-05-06 01:56:09,378 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-05-06 05:14:54] 2025-05-06 01:56:09,885 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,885 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,886 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,886 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,886 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,886 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,886 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,886 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,886 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,886 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,886 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,886 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,887 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,887 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,887 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,887 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,887 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,887 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-06 05:14:54] 2025-05-06 01:56:09,887 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,887 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-06 05:14:54] 2025-05-06 01:56:09,888 | INFO     | job 6634200004 has completed (purged errors)
[2025-05-06 05:14:54] 2025-05-06 01:56:09,888 | INFO     | overall cleanup function is called
[2025-05-06 05:14:54] 2025-05-06 01:56:10,896 | INFO     | --- collectZombieJob: --- 10, [26333]
[2025-05-06 05:14:54] 2025-05-06 01:56:10,897 | INFO     | zombie collector waiting for pid 26333
[2025-05-06 05:14:54] 2025-05-06 01:56:10,897 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-06 05:14:54] 2025-05-06 01:56:10,897 | INFO     | collected zombie processes
[2025-05-06 05:14:54] 2025-05-06 01:56:10,897 | INFO     | will attempt to kill all subprocesses of pid=26333
[2025-05-06 05:14:54] 2025-05-06 01:56:10,979 | INFO     | process IDs to be killed: [26333] (in reverse order)
[2025-05-06 05:14:54] 2025-05-06 01:56:12,037 | WARNING  | found no corresponding commands to process id(s)
[2025-05-06 05:14:54] 2025-05-06 01:56:12,037 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-06 05:14:54] 2025-05-06 01:56:12,040 | INFO     | did not find any defunct processes belonging to 26333
[2025-05-06 05:14:54] 2025-05-06 01:56:12,042 | INFO     | did not find any defunct processes belonging to 26333
[2025-05-06 05:14:54] 2025-05-06 01:56:12,042 | INFO     | ready for new job
[2025-05-06 05:14:54] 2025-05-06 01:56:12,042 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-06 05:14:54] 2025-05-06 01:56:12,044 | INFO     | **************************************
[2025-05-06 05:14:54] 2025-05-06 01:56:12,044 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-06 05:14:54] 2025-05-06 01:56:12,045 | INFO     | **************************************
[2025-05-06 05:14:54] 2025-05-06 01:56:12,045 | INFO     | 
[2025-05-06 05:14:54] 2025-05-06 01:56:12,045 | INFO     | pilot is running in a VM
[2025-05-06 05:14:54] 2025-05-06 01:56:12,045 | INFO     | architecture information:
[2025-05-06 05:14:54] 2025-05-06 01:56:12,056 | INFO     | executing command: cat /etc/os-release
[2025-05-06 05:14:54] 2025-05-06 01:56:12,471 | INFO     | cat /etc/os-release:
[2025-05-06 05:14:54] NAME="CentOS Linux"
[2025-05-06 05:14:54] VERSION="7 (Core)"
[2025-05-06 05:14:54] ID="centos"
[2025-05-06 05:14:54] ID_LIKE="rhel fedora"
[2025-05-06 05:14:54] VERSION_ID="7"
[2025-05-06 05:14:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-06 05:14:54] ANSI_COLOR="0;31"
[2025-05-06 05:14:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-06 05:14:54] HOME_URL="https://www.centos.org/"
[2025-05-06 05:14:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-06 05:14:54] 
[2025-05-06 05:14:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-06 05:14:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-06 05:14:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-06 05:14:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-06 05:14:54] 
[2025-05-06 05:14:54] 2025-05-06 01:56:12,471 | INFO     | **************************************
[2025-05-06 05:14:54] 2025-05-06 01:56:12,974 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-05-06 05:14:54] 2025-05-06 01:56:13,192 | INFO     | sufficient remaining disk space (495731081216 B)
[2025-05-06 05:14:54] 2025-05-06 01:56:13,192 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-06 05:14:54] 2025-05-06 01:56:13,192 | INFO     | current server update state: UPDATING_FINAL
[2025-05-06 05:14:54] 2025-05-06 01:56:13,193 | INFO     | update_server=False
[2025-05-06 05:14:54] 2025-05-06 01:56:13,193 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-06 05:14:54] 2025-05-06 01:56:13,193 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-06 05:14:54] 2025-05-06 01:56:13,193 | INFO     | found 0 job(s) in 20 queues
[2025-05-06 05:14:54] 2025-05-06 01:56:13,193 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-06 05:14:54] 2025-05-06 01:56:13,194 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-06 05:14:54] 2025-05-06 01:56:13,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-06 05:14:54] 2025-05-06 01:56:13,198 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-06 05:14:54] 2025-05-06 01:56:13,199 | INFO     | aborting loop
[2025-05-06 05:14:54] 2025-05-06 01:56:13,689 | INFO     | all job control threads have been joined
[2025-05-06 05:14:54] 2025-05-06 01:56:14,198 | INFO     | [job] retrieve thread has finished
[2025-05-06 05:14:54] 2025-05-06 01:56:14,204 | INFO     | [job] job monitor thread has finished
[2025-05-06 05:14:54] 2025-05-06 01:56:14,245 | INFO     | all data control threads have been joined
[2025-05-06 05:14:54] 2025-05-06 01:56:14,392 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-06 05:14:54] 2025-05-06 01:56:14,561 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-06 05:14:54] 2025-05-06 01:56:14,613 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-06 05:14:54] 2025-05-06 01:56:14,634 | INFO     | all payload control threads have been joined
[2025-05-06 05:14:54] 2025-05-06 01:56:14,671 | INFO     | [payload] validate_post thread has finished
[2025-05-06 05:14:54] 2025-05-06 01:56:14,695 | INFO     | [job] control thread has finished
[2025-05-06 05:14:54] 2025-05-06 01:56:14,878 | INFO     | [job] create_data_payload thread has finished
[2025-05-06 05:14:54] 2025-05-06 01:56:14,896 | INFO     | [payload] failed_post thread has finished
[2025-05-06 05:14:54] 2025-05-06 01:56:15,251 | INFO     | [data] control thread has finished
[2025-05-06 05:14:54] 2025-05-06 01:56:15,252 | INFO     | [job] validate thread has finished
[2025-05-06 05:14:54] 2025-05-06 01:56:15,384 | INFO     | [data] copytool_in thread has finished
[2025-05-06 05:14:54] 2025-05-06 01:56:15,398 | INFO     | [job] queue monitor thread has finished
[2025-05-06 05:14:54] 2025-05-06 01:56:15,622 | INFO     | [payload] validate_pre thread has finished
[2025-05-06 05:14:54] 2025-05-06 01:56:15,640 | INFO     | [payload] control thread has finished
[2025-05-06 05:14:54] 2025-05-06 01:56:15,658 | INFO     | [payload] execute_payloads thread has finished
[2025-05-06 05:14:54] 2025-05-06 01:56:16,569 | INFO     | [data] copytool_out thread has finished
[2025-05-06 05:14:54] 2025-05-06 01:56:17,204 | INFO     | [data] queue_monitor thread has finished
[2025-05-06 05:14:54] 2025-05-06 01:56:18,129 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140056778594112)>', '<ExcThread(monitor, started 140056484353792)>']
[2025-05-06 05:14:54] 2025-05-06 01:56:18,222 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-06 05:14:54] 2025-05-06 01:56:18,223 | INFO     | [monitor] control thread has ended
[2025-05-06 05:14:54] 2025-05-06 01:56:23,155 | INFO     | all workflow threads have been joined
[2025-05-06 05:14:54] 2025-05-06 01:56:23,156 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-06 05:14:54] 2025-05-06 01:56:23,156 | INFO     | traces error code: 0
[2025-05-06 05:14:54] 2025-05-06 01:56:23,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-06 05:14:54] 2025-05-06 01:56:23,500 [wrapper] ==== pilot stdout END ====
[2025-05-06 05:14:54] 2025-05-06 01:56:23,647 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-06 05:14:54] 2025-05-06 01:56:23,758 [wrapper] pilotpid: 19817
[2025-05-06 05:14:54] 2025-05-06 01:56:23,889 [wrapper] Pilot exit status: 0
[2025-05-06 05:14:54] 2025-05-06 01:56:24,383 [wrapper] pandaids: 6634200004
[2025-05-06 05:14:54] 2025-05-06 01:56:25,018 [wrapper] cleanup supervisor_pilot 12559 19818
[2025-05-06 05:14:54] 2025-05-06 01:56:25,139 [wrapper] Test setup, not cleaning
[2025-05-06 05:14:54] 2025-05-06 01:56:25,235 [wrapper] apfmon messages muted
[2025-05-06 05:14:54] 2025-05-06 01:56:25,329 [wrapper] ==== wrapper stdout END ====
[2025-05-06 05:14:54] 2025-05-06 01:56:25,426 [wrapper] ==== wrapper stderr END ====
[2025-05-06 05:14:54]  *** Error codes and diagnostics ***
[2025-05-06 05:14:54]     "exeErrorCode": 0,
[2025-05-06 05:14:54]     "exeErrorDiag": "",
[2025-05-06 05:14:54]     "pilotErrorCode": 0,
[2025-05-06 05:14:54]     "pilotErrorDiag": "",
[2025-05-06 05:14:54]  *** Listing of results directory ***
[2025-05-06 05:14:54] total 429644
[2025-05-06 05:14:54] -rw-r--r--. 1 boinc boinc      5111 May  5 13:24 queuedata.json
[2025-05-06 05:14:54] -rw-r--r--. 1 boinc boinc    495897 May  5 13:24 pilot3.tar.gz
[2025-05-06 05:14:54] -rwx------. 1 boinc boinc     37140 May  5 13:26 runpilot2-wrapper.sh
[2025-05-06 05:14:54] -rw-r--r--. 1 boinc boinc       100 May  5 22:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-06 05:14:54] -rwxr-xr-x. 1 boinc boinc      7986 May  5 22:38 run_atlas
[2025-05-06 05:14:54] -rw-r--r--. 1 boinc boinc       105 May  5 22:38 job.xml
[2025-05-06 05:14:54] -rw-r--r--. 1 boinc boinc      6368 May  5 22:38 init_data.xml
[2025-05-06 05:14:54] -rw-r--r--. 2 boinc boinc 226083400 May  5 22:38 EVNT.44506061._000352.pool.root.1
[2025-05-06 05:14:54] -rw-r--r--. 2 boinc boinc     17569 May  5 22:38 start_atlas.sh
[2025-05-06 05:14:54] drwxrwx--x. 2 boinc boinc        68 May  5 22:38 shared
[2025-05-06 05:14:54] -rw-r--r--. 2 boinc boinc    508878 May  5 22:38 input.tar.gz
[2025-05-06 05:14:54] -rw-r--r--. 1 boinc boinc         0 May  5 22:38 boinc_lockfile
[2025-05-06 05:14:54] -rw-r--r--. 1 boinc boinc      2554 May  5 22:38 pandaJob.out
[2025-05-06 05:14:54] -rw-------. 1 boinc boinc       424 May  5 22:38 setup.sh.local
[2025-05-06 05:14:54] -rw-------. 1 boinc boinc    996872 May  5 22:41 agis_schedconf.cvmfs.json
[2025-05-06 05:14:54] drwx------. 4 boinc boinc      4096 May  5 22:41 pilot3
[2025-05-06 05:14:54] -rw-------. 1 boinc boinc 205976501 May  6 03:52 HITS.44506063._008780.pool.root.1
[2025-05-06 05:14:54] -rw-r--r--. 1 boinc boinc       531 May  6 03:52 boinc_task_state.xml
[2025-05-06 05:14:54] -rw-------. 1 boinc boinc      1012 May  6 03:54 memory_monitor_summary.json
[2025-05-06 05:14:54] -rw-------. 1 boinc boinc   1596741 May  6 03:54 agis_ddmendpoints.agis.ALL.json
[2025-05-06 05:14:54] -rw-------. 1 boinc boinc    417472 May  6 03:54 log.44506063._008780.job.log.tgz.1
[2025-05-06 05:14:54] -rw-------. 1 boinc boinc        95 May  6 03:55 pilot_heartbeat.json
[2025-05-06 05:14:54] -rw-------. 1 boinc boinc      7679 May  6 03:56 heartbeat.json
[2025-05-06 05:14:54] -rw-------. 1 boinc boinc      4539 May  6 03:56 pilotlog.txt
[2025-05-06 05:14:54] -rw-------. 1 boinc boinc   1615687 May  6 03:56 log.44506063._008780.job.log.1
[2025-05-06 05:14:54] -rw-------. 1 boinc boinc       357 May  6 03:56 output.list
[2025-05-06 05:14:54] -rw-r--r--. 1 boinc boinc       620 May  6 03:56 runtime_log
[2025-05-06 05:14:54] -rw-------. 1 boinc boinc   2048000 May  6 03:56 result.tar.gz
[2025-05-06 05:14:54] -rw-r--r--. 1 boinc boinc     11013 May  6 03:56 runtime_log.err
[2025-05-06 05:14:54] -rw-------. 1 boinc boinc       656 May  6 03:56 fj1LDmt88V7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmHQ1LDmJPcTln.diag
[2025-05-06 05:14:54] -rw-r--r--. 1 boinc boinc      8192 May  6 05:14 boinc_mmap_file
[2025-05-06 05:14:54] -rw-r--r--. 1 boinc boinc        28 May  6 05:14 wrapper_checkpoint.txt
[2025-05-06 05:14:54] -rw-r--r--. 1 boinc boinc     20498 May  6 05:14 stderr.txt
[2025-05-06 05:14:54] HITS file was successfully produced:
[2025-05-06 05:14:54] -rw-------. 1 boinc boinc 205976501 May  6 03:52 shared/HITS.pool.root.1
[2025-05-06 05:14:54]  *** Contents of shared directory: ***
[2025-05-06 05:14:54] total 424460
[2025-05-06 05:14:54] -rw-r--r--. 2 boinc boinc 226083400 May  5 22:38 ATLAS.root_0
[2025-05-06 05:14:54] -rw-r--r--. 2 boinc boinc     17569 May  5 22:38 start_atlas.sh
[2025-05-06 05:14:54] -rw-r--r--. 2 boinc boinc    508878 May  5 22:38 input.tar.gz
[2025-05-06 05:14:54] -rw-------. 1 boinc boinc 205976501 May  6 03:52 HITS.pool.root.1
[2025-05-06 05:14:54] -rw-------. 1 boinc boinc   2048000 May  6 03:56 result.tar.gz
05:14:56 (16127): run_atlas exited; CPU time 64754.374028
05:14:56 (16127): called boinc_finish(0)

</stderr_txt>
]]>

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