Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
21:01:23 (1500438): wrapper (7.7.26015): starting
21:01:23 (1500438): wrapper: running run_atlas (--nthreads 4)
[2025-05-05 21:01:23] Arguments: --nthreads 4
[2025-05-05 21:01:23] Threads: 4
[2025-05-05 21:01:23] Checking for CVMFS
[2025-05-05 21:01:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-05 21:01:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-05 21:01:23] Running cvmfs_config stat atlas.cern.ch
[2025-05-05 21:01:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-05 21:01:23] 2.9.2.0 1322309 607 72296 145646 1 56 35530515 36864001 0 130560 0 451950 99.987 227972 59352 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-05-05 21:01:23] CVMFS is ok
[2025-05-05 21:01:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-05 21:01:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-05 21:01:23] Further information can be found at the LHC@home message board.
[2025-05-05 21:01:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-05 21:01:23] Checking for apptainer binary...
[2025-05-05 21:01:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-05 21:01:23] Running /usr/bin/apptainer --version
[2025-05-05 21:01:23] apptainer version 1.3.6-6.1
[2025-05-05 21:01:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-05 21:01:23] thA375a
[2025-05-05 21:01:23] apptainer works
[2025-05-05 21:01:23] Set ATHENA_PROC_NUMBER=4
[2025-05-05 21:01:23] Set ATHENA_CORE_NUMBER=4
[2025-05-05 21:01:23] Starting ATLAS job with PandaID=6634151550
[2025-05-05 21:01:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-05 22:32:12]  *** The last 200 lines of the pilot log: ***
[2025-05-05 22:32:12]  is_tar=False
[2025-05-05 22:32:12]  lfn=log.44506063._006120.job.log.tgz.1
[2025-05-05 22:32:12]  mtime=0
[2025-05-05 22:32:12]  protocol_id=None
[2025-05-05 22:32:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-05-05 22:32:12]  replicas=None
[2025-05-05 22:32:12]  scope=mc23_13p6TeV
[2025-05-05 22:32:12]  status=None
[2025-05-05 22:32:12]  status_code=0
[2025-05-05 22:32:12]  storage_token=
[2025-05-05 22:32:12]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6634151550/log.44506063._006120.job.log.tgz.1
[2025-05-05 22:32:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/85/d5/log.44506063._006120.job.log.tgz.1
[2025-05-05 22:32:12]  workdir=None
[2025-05-05 22:32:12] ]
[2025-05-05 22:32:12] 2025-05-05 20:31:51,485 | INFO     | transferring file log.44506063._006120.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6634151550/log.44506063._006120.job.log.tgz.1 to /local/data/boinc/
[2025-05-05 22:32:12] 2025-05-05 20:31:51,485 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6634151550/log.44506063._006120.job.log.tgz.1 /local/data/boinc/slots/0/log.44506063._0061
[2025-05-05 22:32:12] 2025-05-05 20:31:51,505 | INFO     | adding to output.list: log.44506063._006120.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/85/d5/log.44506063._006120.job.log.tg
[2025-05-05 22:32:12] 2025-05-05 20:31:51,505 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-05 22:32:12] 2025-05-05 20:31:51,505 | INFO     | summary of transferred files:
[2025-05-05 22:32:12] 2025-05-05 20:31:51,505 | INFO     |  -- lfn=log.44506063._006120.job.log.tgz.1, status_code=0, status=transferred
[2025-05-05 22:32:12] 2025-05-05 20:31:51,506 | INFO     | stage-out finished correctly
[2025-05-05 22:32:12] 2025-05-05 20:31:51,547 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-05 22:32:12] 2025-05-05 20:31:51,974 | INFO     | PID=1504165 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-05 22:32:12] 2025-05-05 20:31:52,994 | INFO     | job 6634151550 has state=finished
[2025-05-05 22:32:12] 2025-05-05 20:31:52,994 | INFO     | preparing for final server update for job 6634151550 in state='finished'
[2025-05-05 22:32:12] 2025-05-05 20:31:52,994 | INFO     | this job has now completed (state=finished)
[2025-05-05 22:32:12] 2025-05-05 20:31:52,994 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-05 22:32:12] 2025-05-05 20:31:52,994 | INFO     | log transfer has been attempted: DONE
[2025-05-05 22:32:12] 2025-05-05 20:31:52,994 | INFO     | job 6634151550 has finished - writing final server update
[2025-05-05 22:32:12] 2025-05-05 20:31:52,995 | INFO     | total number of processed events: 400 (read)
[2025-05-05 22:32:12] 2025-05-05 20:31:52,996 | INFO     | executing command: lscpu
[2025-05-05 22:32:12] 2025-05-05 20:31:53,018 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-05 22:32:12] 2025-05-05 20:31:53,202 | WARNING  | process 1510736 can no longer be monitored (due to stat problems) - aborting
[2025-05-05 22:32:12] 2025-05-05 20:31:53,202 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6634151550/memory_monitor_summary.json (trf name=prmon)
[2025-05-05 22:32:12] 2025-05-05 20:31:53,250 | INFO     | number of running child processes to parent process 1510736: 1
[2025-05-05 22:32:12] 2025-05-05 20:31:53,250 | INFO     | maximum number of monitored processes: 6
[2025-05-05 22:32:12] 2025-05-05 20:31:55,752 | INFO     | monitor loop #416: job 0:6634151550 is in state 'finished'
[2025-05-05 22:32:12] 2025-05-05 20:31:55,753 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-05 22:32:12] 2025-05-05 20:31:58,255 | INFO     | monitor loop #417: job 0:6634151550 is in state 'finished'
[2025-05-05 22:32:12] 2025-05-05 20:31:58,256 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-05 22:32:12] 2025-05-05 20:31:58,389 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-05 22:32:12] 2025-05-05 20:31:58,390 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6634151550/memory_monitor_summary.json (trf name=prmon)
[2025-05-05 22:32:12] 2025-05-05 20:31:58,390 | INFO     | extracted standard info from prmon json
[2025-05-05 22:32:12] 2025-05-05 20:31:58,390 | INFO     | extracted standard memory fields from prmon json
[2025-05-05 22:32:12] 2025-05-05 20:31:58,390 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-05 22:32:12] 2025-05-05 20:31:58,390 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-05 22:32:12] 2025-05-05 20:31:58,390 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-05 22:32:12] 2025-05-05 20:31:58,391 | INFO     | fitting pss+swap vs Time
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | sum of square deviations: 170944600.5
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | sum of deviations: 571449464.0000043
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | mean x: 1746474490.5
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | mean y: 2430784.0975609757
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | -- intersect: -5835846111.263668
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | intersect: -5835846111.263668
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | chi2: 1.2217416075891205
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | -- intersect: -5835846111.263668
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | current memory leak: 3.34 B/s (using 82 data points, chi2=1.22)
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | ..............................
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | . Timing measurements:
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | . get job = 0 s
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | . initial setup = 1 s
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | . payload setup = 4 s
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | . stage-in = 0 s
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | . payload execution = 5396 s
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | . stage-out = 0 s
[2025-05-05 22:32:12] 2025-05-05 20:31:58,392 | INFO     | . log creation = 0 s
[2025-05-05 22:32:12] 2025-05-05 20:31:58,393 | INFO     | ..............................
[2025-05-05 22:32:12] 2025-05-05 20:31:58,434 | INFO     | 
[2025-05-05 22:32:12] 2025-05-05 20:31:58,434 | INFO     | job summary report
[2025-05-05 22:32:12] 2025-05-05 20:31:58,434 | INFO     | --------------------------------------------------
[2025-05-05 22:32:12] 2025-05-05 20:31:58,434 | INFO     | PanDA job id: 6634151550
[2025-05-05 22:32:12] 2025-05-05 20:31:58,434 | INFO     | task id: 44506063
[2025-05-05 22:32:12] 2025-05-05 20:31:58,434 | INFO     | errors: (none)
[2025-05-05 22:32:12] 2025-05-05 20:31:58,434 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-05 22:32:12] 2025-05-05 20:31:58,434 | INFO     | pilot state: finished 
[2025-05-05 22:32:12] 2025-05-05 20:31:58,435 | INFO     | transexitcode: 0
[2025-05-05 22:32:12] 2025-05-05 20:31:58,435 | INFO     | exeerrorcode: 0
[2025-05-05 22:32:12] 2025-05-05 20:31:58,435 | INFO     | exeerrordiag: 
[2025-05-05 22:32:12] 2025-05-05 20:31:58,435 | INFO     | exitcode: 0
[2025-05-05 22:32:12] 2025-05-05 20:31:58,435 | INFO     | exitmsg: OK
[2025-05-05 22:32:12] 2025-05-05 20:31:58,435 | INFO     | cpuconsumptiontime: 18869 s
[2025-05-05 22:32:12] 2025-05-05 20:31:58,435 | INFO     | nevents: 400
[2025-05-05 22:32:12] 2025-05-05 20:31:58,435 | INFO     | neventsw: 0
[2025-05-05 22:32:12] 2025-05-05 20:31:58,435 | INFO     | pid: 1510736
[2025-05-05 22:32:12] 2025-05-05 20:31:58,435 | INFO     | pgrp: 1510736
[2025-05-05 22:32:12] 2025-05-05 20:31:58,435 | INFO     | corecount: 4
[2025-05-05 22:32:12] 2025-05-05 20:31:58,435 | INFO     | event service: False
[2025-05-05 22:32:12] 2025-05-05 20:31:58,435 | INFO     | sizes: {0: 2393736, 4: 2393942, 11: 2393970, 5404: 2420518, 5405: 2429521, 5412: 2429635}
[2025-05-05 22:32:12] 2025-05-05 20:31:58,435 | INFO     | --------------------------------------------------
[2025-05-05 22:32:12] 2025-05-05 20:31:58,435 | INFO     | 
[2025-05-05 22:32:12] 2025-05-05 20:31:58,435 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-05-05 22:32:12] 2025-05-05 20:31:58,453 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | job 6634151550 has completed (purged errors)
[2025-05-05 22:32:12] 2025-05-05 20:31:58,454 | INFO     | overall cleanup function is called
[2025-05-05 22:32:12] 2025-05-05 20:31:59,461 | INFO     | --- collectZombieJob: --- 10, [1510736]
[2025-05-05 22:32:12] 2025-05-05 20:31:59,461 | INFO     | zombie collector waiting for pid 1510736
[2025-05-05 22:32:12] 2025-05-05 20:31:59,461 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-05 22:32:12] 2025-05-05 20:31:59,461 | INFO     | collected zombie processes
[2025-05-05 22:32:12] 2025-05-05 20:31:59,462 | INFO     | will attempt to kill all subprocesses of pid=1510736
[2025-05-05 22:32:12] 2025-05-05 20:31:59,512 | INFO     | process IDs to be killed: [1510736] (in reverse order)
[2025-05-05 22:32:12] 2025-05-05 20:31:59,548 | WARNING  | found no corresponding commands to process id(s)
[2025-05-05 22:32:12] 2025-05-05 20:31:59,548 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-05 22:32:12] 2025-05-05 20:31:59,550 | INFO     | did not find any defunct processes belonging to 1510736
[2025-05-05 22:32:12] 2025-05-05 20:31:59,552 | INFO     | did not find any defunct processes belonging to 1510736
[2025-05-05 22:32:12] 2025-05-05 20:31:59,552 | INFO     | ready for new job
[2025-05-05 22:32:12] 2025-05-05 20:31:59,552 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-05 22:32:12] 2025-05-05 20:31:59,553 | INFO     | **************************************
[2025-05-05 22:32:12] 2025-05-05 20:31:59,553 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-05 22:32:12] 2025-05-05 20:31:59,553 | INFO     | **************************************
[2025-05-05 22:32:12] 2025-05-05 20:31:59,553 | INFO     | 
[2025-05-05 22:32:12] 2025-05-05 20:31:59,553 | INFO     | architecture information:
[2025-05-05 22:32:12] 2025-05-05 20:31:59,553 | INFO     | executing command: cat /etc/os-release
[2025-05-05 22:32:12] 2025-05-05 20:31:59,568 | INFO     | cat /etc/os-release:
[2025-05-05 22:32:12] NAME="CentOS Linux"
[2025-05-05 22:32:12] VERSION="7 (Core)"
[2025-05-05 22:32:12] ID="centos"
[2025-05-05 22:32:12] ID_LIKE="rhel fedora"
[2025-05-05 22:32:12] VERSION_ID="7"
[2025-05-05 22:32:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-05 22:32:12] ANSI_COLOR="0;31"
[2025-05-05 22:32:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-05 22:32:12] HOME_URL="https://www.centos.org/"
[2025-05-05 22:32:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-05 22:32:12] 
[2025-05-05 22:32:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-05 22:32:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-05 22:32:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-05 22:32:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-05 22:32:12] 
[2025-05-05 22:32:12] 2025-05-05 20:31:59,568 | INFO     | **************************************
[2025-05-05 22:32:12] 2025-05-05 20:32:00,072 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-05-05 22:32:12] 2025-05-05 20:32:00,090 | INFO     | sufficient remaining disk space (219382022144 B)
[2025-05-05 22:32:12] 2025-05-05 20:32:00,091 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-05 22:32:12] 2025-05-05 20:32:00,091 | INFO     | current server update state: UPDATING_FINAL
[2025-05-05 22:32:12] 2025-05-05 20:32:00,091 | INFO     | update_server=False
[2025-05-05 22:32:12] 2025-05-05 20:32:00,091 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-05 22:32:12] 2025-05-05 20:32:00,091 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-05 22:32:12] 2025-05-05 20:32:00,091 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-05 22:32:12] 2025-05-05 20:32:00,091 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-05 22:32:12] 2025-05-05 20:32:00,091 | INFO     | aborting loop
[2025-05-05 22:32:12] 2025-05-05 20:32:00,091 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-05 22:32:12] 2025-05-05 20:32:00,092 | INFO     | found 0 job(s) in 20 queues
[2025-05-05 22:32:12] 2025-05-05 20:32:00,092 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-05 22:32:12] 2025-05-05 20:32:00,092 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-05 22:32:12] 2025-05-05 20:32:01,096 | INFO     | [job] retrieve thread has finished
[2025-05-05 22:32:12] 2025-05-05 20:32:01,097 | INFO     | [job] queue monitor thread has finished
[2025-05-05 22:32:12] 2025-05-05 20:32:01,097 | INFO     | [job] job monitor thread has finished
[2025-05-05 22:32:12] 2025-05-05 20:32:01,116 | INFO     | all data control threads have been joined
[2025-05-05 22:32:12] 2025-05-05 20:32:01,153 | INFO     | [payload] validate_post thread has finished
[2025-05-05 22:32:12] 2025-05-05 20:32:01,294 | INFO     | all job control threads have been joined
[2025-05-05 22:32:12] 2025-05-05 20:32:01,353 | INFO     | all payload control threads have been joined
[2025-05-05 22:32:12] 2025-05-05 20:32:01,776 | INFO     | [payload] execute_payloads thread has finished
[2025-05-05 22:32:12] 2025-05-05 20:32:01,797 | INFO     | [job] validate thread has finished
[2025-05-05 22:32:12] 2025-05-05 20:32:01,955 | INFO     | [job] create_data_payload thread has finished
[2025-05-05 22:32:12] 2025-05-05 20:32:01,997 | INFO     | [payload] validate_pre thread has finished
[2025-05-05 22:32:12] 2025-05-05 20:32:02,097 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-05 22:32:12] 2025-05-05 20:32:02,097 | INFO     | [data] copytool_out thread has finished
[2025-05-05 22:32:12] 2025-05-05 20:32:02,107 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-05 22:32:12] 2025-05-05 20:32:02,121 | INFO     | [data] control thread has finished
[2025-05-05 22:32:12] 2025-05-05 20:32:02,228 | INFO     | [payload] failed_post thread has finished
[2025-05-05 22:32:12] 2025-05-05 20:32:02,300 | INFO     | [job] control thread has finished
[2025-05-05 22:32:12] 2025-05-05 20:32:02,359 | INFO     | [payload] control thread has finished
[2025-05-05 22:32:12] 2025-05-05 20:32:02,586 | INFO     | [data] copytool_in thread has finished
[2025-05-05 22:32:12] 2025-05-05 20:32:06,104 | INFO     | [data] queue_monitor thread has finished
[2025-05-05 22:32:12] 2025-05-05 20:32:07,669 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140543483017024)>', '<ExcThread(monitor, started 140542847469312)>']
[2025-05-05 22:32:12] 2025-05-05 20:32:08,133 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-05 22:32:12] 2025-05-05 20:32:08,133 | INFO     | [monitor] control thread has ended
[2025-05-05 22:32:12] 2025-05-05 20:32:12,694 | INFO     | all workflow threads have been joined
[2025-05-05 22:32:12] 2025-05-05 20:32:12,694 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-05 22:32:12] 2025-05-05 20:32:12,695 | INFO     | traces error code: 0
[2025-05-05 22:32:12] 2025-05-05 20:32:12,695 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-05 22:32:12] 2025-05-05 20:32:12,776 [wrapper] ==== pilot stdout END ====
[2025-05-05 22:32:12] 2025-05-05 20:32:12,780 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-05 22:32:12] 2025-05-05 20:32:12,785 [wrapper] pilotpid: 1504165
[2025-05-05 22:32:12] 2025-05-05 20:32:12,789 [wrapper] Pilot exit status: 0
[2025-05-05 22:32:12] 2025-05-05 20:32:12,801 [wrapper] pandaids: 6634151550
[2025-05-05 22:32:12] 2025-05-05 20:32:12,826 [wrapper] cleanup supervisor_pilot 1523175 1504166
[2025-05-05 22:32:12] 2025-05-05 20:32:12,830 [wrapper] Test setup, not cleaning
[2025-05-05 22:32:12] 2025-05-05 20:32:12,835 [wrapper] apfmon messages muted
[2025-05-05 22:32:12] 2025-05-05 20:32:12,839 [wrapper] ==== wrapper stdout END ====
[2025-05-05 22:32:12] 2025-05-05 20:32:12,844 [wrapper] ==== wrapper stderr END ====
[2025-05-05 22:32:12]  *** Error codes and diagnostics ***
[2025-05-05 22:32:12]     "exeErrorCode": 0,
[2025-05-05 22:32:12]     "exeErrorDiag": "",
[2025-05-05 22:32:12]     "pilotErrorCode": 0,
[2025-05-05 22:32:12]     "pilotErrorDiag": "",
[2025-05-05 22:32:12]  *** Listing of results directory ***
[2025-05-05 22:32:12] total 426948
[2025-05-05 22:32:12] -rw-r--r-- 1 boinc boinc    495897 May  5 09:58 pilot3.tar.gz
[2025-05-05 22:32:12] -rwx------ 1 boinc boinc     37140 May  5 10:16 runpilot2-wrapper.sh
[2025-05-05 22:32:12] -rw-r--r-- 1 boinc boinc      5111 May  5 10:16 queuedata.json
[2025-05-05 22:32:12] -rw-r--r-- 1 boinc boinc       100 May  5 21:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-05 22:32:12] -rwxr-xr-x 1 boinc boinc      7986 May  5 21:01 run_atlas
[2025-05-05 22:32:12] -rw-r--r-- 1 boinc boinc       105 May  5 21:01 job.xml
[2025-05-05 22:32:12] -rw-r--r-- 2 boinc boinc 225201157 May  5 21:01 EVNT.44506061._000244.pool.root.1
[2025-05-05 22:32:12] -rw-r--r-- 1 boinc boinc      6861 May  5 21:01 init_data.xml
[2025-05-05 22:32:12] drwxrwx--x 2 boinc boinc      4096 May  5 21:01 shared
[2025-05-05 22:32:12] -rw-r--r-- 2 boinc boinc    508873 May  5 21:01 input.tar.gz
[2025-05-05 22:32:12] -rw-r--r-- 2 boinc boinc     17569 May  5 21:01 start_atlas.sh
[2025-05-05 22:32:12] -rw-r--r-- 1 boinc boinc         0 May  5 21:01 boinc_lockfile
[2025-05-05 22:32:12] -rw-r--r-- 1 boinc boinc      2555 May  5 21:01 pandaJob.out
[2025-05-05 22:32:12] -rw------- 1 boinc boinc       424 May  5 21:01 setup.sh.local
[2025-05-05 22:32:12] -rw------- 1 boinc boinc    996872 May  5 21:01 agis_schedconf.cvmfs.json
[2025-05-05 22:32:12] -rw------- 1 boinc boinc   1596741 May  5 21:01 agis_ddmendpoints.agis.ALL.json
[2025-05-05 22:32:12] drwx------ 4 boinc boinc      4096 May  5 21:01 pilot3
[2025-05-05 22:32:12] -rw------- 1 boinc boinc        95 May  5 22:31 pilot_heartbeat.json
[2025-05-05 22:32:12] -rw------- 1 boinc boinc 206593482 May  5 22:31 HITS.44506063._006120.pool.root.1
[2025-05-05 22:32:12] -rw-r--r-- 1 boinc boinc       530 May  5 22:31 boinc_task_state.xml
[2025-05-05 22:32:12] -rw------- 1 boinc boinc      1022 May  5 22:31 memory_monitor_summary.json
[2025-05-05 22:32:12] -rw------- 1 boinc boinc    256616 May  5 22:31 log.44506063._006120.job.log.tgz.1
[2025-05-05 22:32:12] -rw------- 1 boinc boinc      7657 May  5 22:31 heartbeat.json
[2025-05-05 22:32:12] -rw-r--r-- 1 boinc boinc        27 May  5 22:32 wrapper_checkpoint.txt
[2025-05-05 22:32:12] -rw-r--r-- 1 boinc boinc      8192 May  5 22:32 boinc_mmap_file
[2025-05-05 22:32:12] -rw------- 1 boinc boinc      4480 May  5 22:32 pilotlog.txt
[2025-05-05 22:32:12] -rw------- 1 boinc boinc    521458 May  5 22:32 log.44506063._006120.job.log.1
[2025-05-05 22:32:12] -rw------- 1 boinc boinc       357 May  5 22:32 output.list
[2025-05-05 22:32:12] -rw-r--r-- 1 boinc boinc       620 May  5 22:32 runtime_log
[2025-05-05 22:32:12] -rw------- 1 boinc boinc    798720 May  5 22:32 result.tar.gz
[2025-05-05 22:32:12] -rw-r--r-- 1 boinc boinc     11104 May  5 22:32 runtime_log.err
[2025-05-05 22:32:12] -rw------- 1 boinc boinc       659 May  5 22:32 PXdNDm8A6V7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmxs0LDmA6UTfn.diag
[2025-05-05 22:32:12] -rw-r--r-- 1 boinc boinc     21608 May  5 22:32 stderr.txt
[2025-05-05 22:32:12] HITS file was successfully produced:
[2025-05-05 22:32:12] -rw------- 1 boinc boinc 206593482 May  5 22:31 shared/HITS.pool.root.1
[2025-05-05 22:32:12]  *** Contents of shared directory: ***
[2025-05-05 22:32:12] total 422980
[2025-05-05 22:32:12] -rw-r--r-- 2 boinc boinc 225201157 May  5 21:01 ATLAS.root_0
[2025-05-05 22:32:12] -rw-r--r-- 2 boinc boinc    508873 May  5 21:01 input.tar.gz
[2025-05-05 22:32:12] -rw-r--r-- 2 boinc boinc     17569 May  5 21:01 start_atlas.sh
[2025-05-05 22:32:12] -rw------- 1 boinc boinc 206593482 May  5 22:31 HITS.pool.root.1
[2025-05-05 22:32:12] -rw------- 1 boinc boinc    798720 May  5 22:32 result.tar.gz
22:32:13 (1500438): run_atlas exited; CPU time 18891.036155
22:32:13 (1500438): called boinc_finish(0)

</stderr_txt>
]]>

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