Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-05 13:27:39 (3740): Detected: vboxwrapper 26206
2025-05-05 13:27:39 (3740): Detected: BOINC client v8.0.2
2025-05-05 13:27:40 (3740): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-05-05 13:27:40 (3740): Successfully copied 'init_data.xml' to the shared directory.
2025-05-05 13:27:40 (3740): Create VM. (boinc_841e6d37b4f7eccd, slot#7)
2025-05-05 13:27:41 (3740): Setting Memory Size for VM. (4800MB)
2025-05-05 13:27:41 (3740): Setting CPU Count for VM. (8)
2025-05-05 13:27:42 (3740): Setting Chipset Options for VM.
2025-05-05 13:27:42 (3740): Setting Graphics Controller Options for VM.
2025-05-05 13:27:42 (3740): Setting Boot Options for VM.
2025-05-05 13:27:42 (3740): Setting Network Configuration for NAT.
2025-05-05 13:27:43 (3740): Enabling VM Network Access.
2025-05-05 13:27:43 (3740): Disabling USB Support for VM.
2025-05-05 13:27:43 (3740): Disabling COM Port Support for VM.
2025-05-05 13:27:43 (3740): Disabling LPT Port Support for VM.
2025-05-05 13:27:44 (3740): Disabling Audio Support for VM.
2025-05-05 13:27:44 (3740): Disabling Clipboard Support for VM.
2025-05-05 13:27:44 (3740): Disabling Drag and Drop Support for VM.
2025-05-05 13:27:44 (3740): Adding storage controller(s) to VM.
2025-05-05 13:27:45 (3740): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-05 13:27:48 (3740): Adding VirtualBox Guest Additions to VM.
2025-05-05 13:27:48 (3740): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-05 13:27:48 (3740): forwarding host port 59598 to guest port 80
2025-05-05 13:27:48 (3740): Enabling remote desktop for VM.
2025-05-05 13:27:49 (3740): Enabling shared directory for VM.
2025-05-05 13:27:50 (3740): Starting VM using VBoxManage interface. (boinc_841e6d37b4f7eccd, slot#7)
2025-05-05 13:27:55 (3740): Successfully started VM. (PID = '11376')
2025-05-05 13:27:55 (3740): Reporting VM Process ID to BOINC.
2025-05-05 13:27:55 (3740): Guest Log: BIOS: VirtualBox 7.1.6
2025-05-05 13:27:55 (3740): Guest Log: CPUID EDX: 0x178bfbff
2025-05-05 13:27:55 (3740): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-05 13:27:55 (3740): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-05 13:27:55 (3740): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-05 13:27:55 (3740): Detected: Web Application Enabled (http://localhost:59598)
2025-05-05 13:27:55 (3740): Detected: Remote Desktop Enabled (localhost:59599)
2025-05-05 13:27:55 (3740): Preference change detected
2025-05-05 13:27:55 (3740): Setting CPU throttle for VM. (100%)
2025-05-05 13:27:55 (3740): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-05 13:27:57 (3740): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-05 13:27:57 (3740): Guest Log: BIOS: Booting from Hard Disk...
2025-05-05 13:28:00 (3740): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-05 13:28:00 (3740): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-05 13:28:00 (3740): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-05 13:28:06 (3740): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-05 13:28:06 (3740): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-05 13:28:11 (3740): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-05 13:28:11 (3740): Guest Log: 00:00:00.000133 main     Log opened 2025-05-05T13:28:09.506783000Z
2025-05-05 13:28:11 (3740): Guest Log: 00:00:00.000210 main     OS Product: Linux
2025-05-05 13:28:11 (3740): Guest Log: 00:00:00.000237 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-05 13:28:11 (3740): Guest Log: 00:00:00.000259 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-05 13:28:11 (3740): Guest Log: 00:00:00.000281 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-05 13:28:11 (3740): Guest Log: 00:00:00.000281 main     Process ID: 1374
2025-05-05 13:28:11 (3740): Guest Log: 00:00:00.000282 main     Package type: LINUX_64BITS_GENERIC
2025-05-05 13:28:11 (3740): Guest Log: 00:00:00.002029 main     5.2.32 r132073 started. Verbose level = 0
2025-05-05 13:28:12 (3740): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-05 13:28:12 (3740): Guest Log: [INFO] Mounting shared directory
2025-05-05 13:28:12 (3740): Guest Log: [INFO] Checking for init_data.xml
2025-05-05 13:28:21 (3740): Guest Log: 00:00:10.008761 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 109 635 000ns (GuestNow=1 746 444 501 400 365 000 ns GuestLast=1 746 451 689 510 000 000 ns fSetTimeLastLoop=true )
2025-05-05 13:30:03 (3740): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-05 13:30:03 (3740): Guest Log: [INFO] Detected branch: prod
2025-05-05 13:30:03 (3740): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-05 13:30:03 (3740): Guest Log: Copying input files
2025-05-05 13:30:04 (3740): Guest Log: Copied input files into RunAtlas.
2025-05-05 13:30:04 (3740): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-05 13:30:04 (3740): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-05 13:30:04 (3740): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-05 13:30:04 (3740): Guest Log: Further information can be found at the LHC@home message board.
2025-05-05 13:31:17 (3740): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-05 13:31:17 (3740): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-05 13:31:17 (3740): Guest Log: 2.6.3.0 1693 1 30236 145636 4 1 3117345 4096000 0 65024 0 0 n/a 1 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-05 13:31:17 (3740): Guest Log: copied the webapp to /var/www
2025-05-05 13:31:17 (3740): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-05 13:31:17 (3740): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-05 13:31:18 (3740): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-05 13:31:18 (3740): Guest Log:  *** Starting ATLAS job. (PandaID=6634098474 taskID=44506063) ***
2025-05-05 13:43:45 (3740): Guest Log:  *** Job finished ***
2025-05-05 13:43:45 (3740): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:03,292 | INFO     | [job] validate thread has finished
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:03,532 | INFO     | [job] create_data_payload thread has finished
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:05,147 | INFO     | [data] queue_monitor thread has finished
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:05,925 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140078681761600)>', '<ExcThread(monitor, started 140077715932928)>']
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:06,147 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:06,147 | INFO     | [monitor] control thread has ended
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:10,930 | INFO     | all workflow threads have been joined
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:10,930 | INFO     | end of generic workflow (traces error code: 0)
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:10,930 | INFO     | traces error code: 0
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:10,930 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:11,001 [wrapper] ==== pilot stdout END ====
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:11,005 [wrapper] ==== wrapper stdout RESUME ====
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:11,009 [wrapper] pilotpid: 6136
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:11,012 [wrapper] Pilot exit status: 0
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:43,807 [wrapper] pandaids: 6634098474
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:43,839 [wrapper] cleanup supervisor_pilot  6142 6137
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:43,845 [wrapper] Test setup, not cleaning
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:43,849 [wrapper] apfmon messages muted
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:43,853 [wrapper] ==== wrapper stdout END ====
2025-05-05 13:43:45 (3740): Guest Log: 2025-05-05 11:43:43,857 [wrapper] ==== wrapper stderr END ====
2025-05-05 13:43:45 (3740): Guest Log:  *** Error codes and diagnostics ***
2025-05-05 13:43:45 (3740): Guest Log:     "exeErrorCode": 65,
2025-05-05 13:43:45 (3740): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-05-05 13:43:45 (3740): Guest Log:     "pilotErrorCode": 1305,
2025-05-05 13:43:45 (3740): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-05-05 13:43:45 (3740): Guest Log:  *** Listing of results directory ***
2025-05-05 13:43:45 (3740): Guest Log: total 3896
2025-05-05 13:43:45 (3740): Guest Log: -rw-r--r--. 1 atlas atlas  495897 May  5 05:49 pilot3.tar.gz
2025-05-05 13:43:45 (3740): Guest Log: -rw-r--r--. 1 atlas atlas    5111 May  5 05:54 queuedata.json
2025-05-05 13:43:45 (3740): Guest Log: -rwx------. 1 atlas atlas   37140 May  5 05:54 runpilot2-wrapper.sh
2025-05-05 13:43:45 (3740): Guest Log: -rwxr-xr-x. 1 atlas atlas    9126 May  5 11:30 init_data.xml
2025-05-05 13:43:45 (3740): Guest Log: -rwxr-xr-x. 1 atlas atlas  508870 May  5 11:30 input.tar.gz
2025-05-05 13:43:45 (3740): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 May  5 11:30 start_atlas.sh
2025-05-05 13:43:45 (3740): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 May  5 11:30 EVNT.44506061._000132.pool.root.1 -> /data/./ATLAS.root_0
2025-05-05 13:43:45 (3740): Guest Log: -rw-r--r--. 1 atlas atlas    2556 May  5 11:31 pandaJob.out
2025-05-05 13:43:45 (3740): Guest Log: -rw-------. 1 atlas atlas     424 May  5 11:31 setup.sh.local
2025-05-05 13:43:45 (3740): Guest Log: -rw-------. 1 atlas atlas  995801 May  5 11:38 agis_schedconf.cvmfs.json
2025-05-05 13:43:45 (3740): Guest Log: -rw-------. 1 atlas atlas 1596741 May  5 11:38 agis_ddmendpoints.agis.ALL.json
2025-05-05 13:43:45 (3740): Guest Log: drwx------. 4 atlas atlas    4096 May  5 11:38 pilot3
2025-05-05 13:43:45 (3740): Guest Log: -rw-------. 1 atlas atlas    1004 May  5 11:40 memory_monitor_summary.json
2025-05-05 13:43:45 (3740): Guest Log: -rw-------. 1 atlas atlas   21001 May  5 11:40 log.44506063._003257.job.log.tgz.1
2025-05-05 13:43:45 (3740): Guest Log: -rw-------. 1 atlas atlas      95 May  5 11:42 pilot_heartbeat.json
2025-05-05 13:43:45 (3740): Guest Log: -rw-------. 1 atlas atlas    8364 May  5 11:42 heartbeat.json
2025-05-05 13:43:45 (3740): Guest Log: -rw-------. 1 atlas atlas    4536 May  5 11:43 pilotlog.txt
2025-05-05 13:43:45 (3740): Guest Log: -rw-------. 1 atlas atlas   82704 May  5 11:43 log.44506063._003257.job.log.1
2025-05-05 13:43:45 (3740): Guest Log: -rw-------. 1 atlas atlas     188 May  5 11:43 output.list
2025-05-05 13:43:45 (3740): Guest Log: -rw-r--r--. 1 atlas atlas     620 May  5 11:43 runtime_log
2025-05-05 13:43:45 (3740): Guest Log: -rw-------. 1 atlas atlas  122880 May  5 11:43 result.tar.gz
2025-05-05 13:43:45 (3740): Guest Log: -rw-r--r--. 1 atlas atlas   10820 May  5 11:43 runtime_log.err
2025-05-05 13:43:45 (3740): Guest Log: -rw-------. 1 atlas atlas     655 May  5 11:43 InxLDmUx3V7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm6J0LDmeTsSYo.diag
2025-05-05 13:43:45 (3740): Guest Log: Looking for outputfile HITS.44506063._003257.pool.root.1
2025-05-05 13:43:45 (3740): Guest Log: No HITS file was produced
2025-05-05 13:43:45 (3740): Guest Log: Successfully finished the ATLAS job!
2025-05-05 13:43:45 (3740): Guest Log: Copying the results back to the shared directory!
2025-05-05 13:43:45 (3740): Guest Log:  *** Contents of shared directory: ***
2025-05-05 13:43:45 (3740): Guest Log: total 218112
2025-05-05 13:43:45 (3740): Guest Log: -rwxrwxrwx. 1 root root 222675790 May  5 11:27 ATLAS.root_0
2025-05-05 13:43:45 (3740): Guest Log: -rwxrwxrwx. 1 root root      9126 May  5 11:27 init_data.xml
2025-05-05 13:43:45 (3740): Guest Log: -rwxrwxrwx. 1 root root    508870 May  5 11:07 input.tar.gz
2025-05-05 13:43:45 (3740): Guest Log: -rwxrwxrwx. 1 root root    122880 May  5 11:43 result.tar.gz
2025-05-05 13:43:45 (3740): Guest Log: -rwxrwxrwx. 1 root root     17569 May  5 11:07 start_atlas.sh
2025-05-05 13:43:45 (3740): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-05 13:43:45 (3740): VM Completion File Detected.
2025-05-05 13:43:45 (3740): Powering off VM.
2025-05-05 13:43:45 (3740): Successfully stopped VM.
2025-05-05 13:43:45 (3740): Deregistering VM. (boinc_841e6d37b4f7eccd, slot#7)
2025-05-05 13:43:45 (3740): Removing network bandwidth throttle group from VM.
2025-05-05 13:43:45 (3740): Removing VM from VirtualBox.
13:43:51 (3740): called boinc_finish(0)

</stderr_txt>
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