Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
02:19:21 (7707): wrapper (7.7.26015): starting
02:19:21 (7707): wrapper: running run_atlas (--nthreads 12)
[2025-05-05 02:19:21] Arguments: --nthreads 12
[2025-05-05 02:19:21] Threads: 12
[2025-05-05 02:19:21] Checking for CVMFS
[2025-05-05 02:19:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-05 02:19:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-05 02:19:24] Running cvmfs_config stat atlas.cern.ch
[2025-05-05 02:19:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-05 02:19:24] 2.10.0.0 7912 0 33068 145629 3 1 8705757 16777217 0 130560 0 0 0.000 1170 1126 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-05-05 02:19:24] CVMFS is ok
[2025-05-05 02:19:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-05 02:19:24] Checking for apptainer binary...
[2025-05-05 02:19:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-05 02:19:24] Running /usr/bin/apptainer --version
[2025-05-05 02:19:24] apptainer version 1.3.6-150600.4.9.1
[2025-05-05 02:19:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-05 02:19:24] boinc-runner
[2025-05-05 02:19:24] apptainer works
[2025-05-05 02:19:24] Set ATHENA_PROC_NUMBER=12
[2025-05-05 02:19:24] Set ATHENA_CORE_NUMBER=12
[2025-05-05 02:19:24] Starting ATLAS job with PandaID=6634040199
[2025-05-05 02:19:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-05 02:58:07]  *** The last 200 lines of the pilot log: ***
[2025-05-05 02:58:07]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-05-05 02:58:07]  is_altstaged=None
[2025-05-05 02:58:07]  is_tar=False
[2025-05-05 02:58:07]  lfn=log.44506063._001177.job.log.tgz.1
[2025-05-05 02:58:07]  mtime=0
[2025-05-05 02:58:07]  protocol_id=None
[2025-05-05 02:58:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-05-05 02:58:07]  replicas=None
[2025-05-05 02:58:07]  scope=mc23_13p6TeV
[2025-05-05 02:58:07]  status=None
[2025-05-05 02:58:07]  status_code=0
[2025-05-05 02:58:07]  storage_token=
[2025-05-05 02:58:07]  surl=/var/lib/boinc/slots/17/PanDA_Pilot-6634040199/log.44506063._001177.job.log.tgz.1
[2025-05-05 02:58:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/77/e0/log.44506063._001177.job.log.tgz.1
[2025-05-05 02:58:07]  workdir=None
[2025-05-05 02:58:07] ]
[2025-05-05 02:58:07] 2025-05-05 07:57:41,941 | INFO     | transferring file log.44506063._001177.job.log.tgz.1 from /var/lib/boinc/slots/17/PanDA_Pilot-6634040199/log.44506063._001177.job.log.tgz.1 to /var/lib/boinc/slots
[2025-05-05 02:58:07] 2025-05-05 07:57:41,941 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/17/PanDA_Pilot-6634040199/log.44506063._001177.job.log.tgz.1 /var/lib/boinc/slots/17/log.44506063._001177.j
[2025-05-05 02:58:07] 2025-05-05 07:57:41,954 | INFO     | adding to output.list: log.44506063._001177.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/77/e0/log.44506063._001177.job.log.tg
[2025-05-05 02:58:07] 2025-05-05 07:57:41,954 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-05 02:58:07] 2025-05-05 07:57:41,954 | INFO     | summary of transferred files:
[2025-05-05 02:58:07] 2025-05-05 07:57:41,955 | INFO     |  -- lfn=log.44506063._001177.job.log.tgz.1, status_code=0, status=transferred
[2025-05-05 02:58:07] 2025-05-05 07:57:41,955 | INFO     | stage-out finished correctly
[2025-05-05 02:58:07] 2025-05-05 07:57:42,689 | WARNING  | process 29555 can no longer be monitored (due to stat problems) - aborting
[2025-05-05 02:58:07] 2025-05-05 07:57:42,689 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-6634040199/memory_monitor_summary.json (trf name=prmon)
[2025-05-05 02:58:07] 2025-05-05 07:57:42,723 | INFO     | number of running child processes to parent process 29555: 1
[2025-05-05 02:58:07] 2025-05-05 07:57:42,723 | INFO     | maximum number of monitored processes: 6
[2025-05-05 02:58:07] 2025-05-05 07:57:45,226 | INFO     | monitor loop #176: job 0:6634040199 is in state 'finished'
[2025-05-05 02:58:07] 2025-05-05 07:57:45,226 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-05 02:58:07] 2025-05-05 07:57:45,349 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-05 02:58:07] 2025-05-05 07:57:45,533 | INFO     | job 6634040199 has state=finished
[2025-05-05 02:58:07] 2025-05-05 07:57:45,534 | INFO     | preparing for final server update for job 6634040199 in state='finished'
[2025-05-05 02:58:07] 2025-05-05 07:57:45,534 | INFO     | this job has now completed (state=finished)
[2025-05-05 02:58:07] 2025-05-05 07:57:45,534 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-05 02:58:07] 2025-05-05 07:57:45,534 | INFO     | log transfer has been attempted: DONE
[2025-05-05 02:58:07] 2025-05-05 07:57:45,534 | INFO     | job 6634040199 has finished - writing final server update
[2025-05-05 02:58:07] 2025-05-05 07:57:45,534 | INFO     | total number of processed events: 400 (read)
[2025-05-05 02:58:07] 2025-05-05 07:57:45,536 | INFO     | executing command: lscpu
[2025-05-05 02:58:07] 2025-05-05 07:57:45,556 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-05 02:58:07] 2025-05-05 07:57:47,562 | INFO     | CPU arch script returned: x86-64-v4
[2025-05-05 02:58:07] 2025-05-05 07:57:47,562 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-6634040199/memory_monitor_summary.json (trf name=prmon)
[2025-05-05 02:58:07] 2025-05-05 07:57:47,563 | INFO     | extracted standard info from prmon json
[2025-05-05 02:58:07] 2025-05-05 07:57:47,563 | INFO     | extracted standard memory fields from prmon json
[2025-05-05 02:58:07] 2025-05-05 07:57:47,563 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-05 02:58:07] 2025-05-05 07:57:47,563 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-05 02:58:07] 2025-05-05 07:57:47,563 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-05 02:58:07] 2025-05-05 07:57:47,563 | INFO     | fitting pss+swap vs Time
[2025-05-05 02:58:07] 2025-05-05 07:57:47,563 | INFO     | sum of square deviations: 9228080.0
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | sum of deviations: 3726799087.0
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | mean x: 1746430815.0
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | mean y: 2787710.35483871
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | -- intersect: -705300673773.5796
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | intersect: -705300673773.5796
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | chi2: 0.6534672114135198
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | -- intersect: -705300673773.5796
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | current memory leak: 403.85 B/s (using 31 data points, chi2=0.65)
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | ..............................
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | . Timing measurements:
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | . get job = 0 s
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | . initial setup = 3 s
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | . payload setup = 2 s
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | . stage-in = 0 s
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | . payload execution = 2265 s
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | . stage-out = 0 s
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | . log creation = 0 s
[2025-05-05 02:58:07] 2025-05-05 07:57:47,564 | INFO     | ..............................
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | 
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | job summary report
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | --------------------------------------------------
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | PanDA job id: 6634040199
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | task id: 44506063
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | errors: (none)
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | pilot state: finished 
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | transexitcode: 0
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | exeerrorcode: 0
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | exeerrordiag: 
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | exitcode: 0
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | exitmsg: OK
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | cpuconsumptiontime: 21170 s
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | nevents: 400
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | neventsw: 0
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | pid: 29555
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | pgrp: 29555
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | corecount: 12
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | event service: False
[2025-05-05 02:58:07] 2025-05-05 07:57:47,590 | INFO     | sizes: {0: 2393731, 2: 2393937, 10: 2393965, 2272: 2427989, 2275: 2427989, 2277: 2428159}
[2025-05-05 02:58:07] 2025-05-05 07:57:47,591 | INFO     | --------------------------------------------------
[2025-05-05 02:58:07] 2025-05-05 07:57:47,591 | INFO     | 
[2025-05-05 02:58:07] 2025-05-05 07:57:47,591 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | job 6634040199 has completed (purged errors)
[2025-05-05 02:58:07] 2025-05-05 07:57:47,600 | INFO     | overall cleanup function is called
[2025-05-05 02:58:07] 2025-05-05 07:57:48,607 | INFO     | --- collectZombieJob: --- 10, [29555]
[2025-05-05 02:58:07] 2025-05-05 07:57:48,607 | INFO     | zombie collector waiting for pid 29555
[2025-05-05 02:58:07] 2025-05-05 07:57:48,607 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-05 02:58:07] 2025-05-05 07:57:48,607 | INFO     | collected zombie processes
[2025-05-05 02:58:07] 2025-05-05 07:57:48,608 | INFO     | will attempt to kill all subprocesses of pid=29555
[2025-05-05 02:58:07] 2025-05-05 07:57:48,648 | INFO     | process IDs to be killed: [29555] (in reverse order)
[2025-05-05 02:58:07] 2025-05-05 07:57:48,669 | WARNING  | found no corresponding commands to process id(s)
[2025-05-05 02:58:07] 2025-05-05 07:57:48,670 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-05 02:58:07] 2025-05-05 07:57:48,673 | INFO     | did not find any defunct processes belonging to 29555
[2025-05-05 02:58:07] 2025-05-05 07:57:48,675 | INFO     | did not find any defunct processes belonging to 29555
[2025-05-05 02:58:07] 2025-05-05 07:57:48,675 | INFO     | ready for new job
[2025-05-05 02:58:07] 2025-05-05 07:57:48,675 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-05 02:58:07] 2025-05-05 07:57:48,675 | INFO     | **************************************
[2025-05-05 02:58:07] 2025-05-05 07:57:48,675 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-05 02:58:07] 2025-05-05 07:57:48,675 | INFO     | **************************************
[2025-05-05 02:58:07] 2025-05-05 07:57:48,676 | INFO     | 
[2025-05-05 02:58:07] 2025-05-05 07:57:48,676 | INFO     | architecture information:
[2025-05-05 02:58:07] 2025-05-05 07:57:48,676 | INFO     | executing command: cat /etc/os-release
[2025-05-05 02:58:07] 2025-05-05 07:57:48,687 | INFO     | cat /etc/os-release:
[2025-05-05 02:58:07] NAME="CentOS Linux"
[2025-05-05 02:58:07] VERSION="7 (Core)"
[2025-05-05 02:58:07] ID="centos"
[2025-05-05 02:58:07] ID_LIKE="rhel fedora"
[2025-05-05 02:58:07] VERSION_ID="7"
[2025-05-05 02:58:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-05 02:58:07] ANSI_COLOR="0;31"
[2025-05-05 02:58:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-05 02:58:07] HOME_URL="https://www.centos.org/"
[2025-05-05 02:58:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-05 02:58:07] 
[2025-05-05 02:58:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-05 02:58:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-05 02:58:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-05 02:58:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-05 02:58:07] 
[2025-05-05 02:58:07] 2025-05-05 07:57:48,687 | INFO     | **************************************
[2025-05-05 02:58:07] 2025-05-05 07:57:49,190 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2025-05-05 02:58:07] 2025-05-05 07:57:49,203 | INFO     | sufficient remaining disk space (3887602860032 B)
[2025-05-05 02:58:07] 2025-05-05 07:57:49,203 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-05 02:58:07] 2025-05-05 07:57:49,203 | INFO     | current server update state: UPDATING_FINAL
[2025-05-05 02:58:07] 2025-05-05 07:57:49,203 | INFO     | update_server=False
[2025-05-05 02:58:07] 2025-05-05 07:57:49,203 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-05 02:58:07] 2025-05-05 07:57:49,203 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-05 02:58:07] 2025-05-05 07:57:49,203 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-05 02:58:07] 2025-05-05 07:57:49,203 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-05 02:58:07] 2025-05-05 07:57:49,204 | INFO     | aborting loop
[2025-05-05 02:58:07] 2025-05-05 07:57:49,204 | INFO     | found 0 job(s) in 20 queues
[2025-05-05 02:58:07] 2025-05-05 07:57:49,204 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-05 02:58:07] 2025-05-05 07:57:49,204 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-05 02:58:07] 2025-05-05 07:57:49,683 | INFO     | all data control threads have been joined
[2025-05-05 02:58:07] 2025-05-05 07:57:50,004 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-05 02:58:07] 2025-05-05 07:57:50,205 | INFO     | [job] job monitor thread has finished
[2025-05-05 02:58:07] 2025-05-05 07:57:50,208 | INFO     | [job] retrieve thread has finished
[2025-05-05 02:58:07] 2025-05-05 07:57:50,209 | INFO     | [job] queue monitor thread has finished
[2025-05-05 02:58:07] 2025-05-05 07:57:50,552 | INFO     | all payload control threads have been joined
[2025-05-05 02:58:07] 2025-05-05 07:57:50,685 | INFO     | [payload] validate_post thread has finished
[2025-05-05 02:58:07] 2025-05-05 07:57:50,689 | INFO     | [data] control thread has finished
[2025-05-05 02:58:07] 2025-05-05 07:57:50,701 | INFO     | all job control threads have been joined
[2025-05-05 02:58:07] 2025-05-05 07:57:50,830 | INFO     | [job] create_data_payload thread has finished
[2025-05-05 02:58:07] 2025-05-05 07:57:51,201 | INFO     | [payload] failed_post thread has finished
[2025-05-05 02:58:07] 2025-05-05 07:57:51,292 | INFO     | [data] copytool_in thread has finished
[2025-05-05 02:58:07] 2025-05-05 07:57:51,327 | INFO     | [job] validate thread has finished
[2025-05-05 02:58:07] 2025-05-05 07:57:51,333 | INFO     | [payload] validate_pre thread has finished
[2025-05-05 02:58:07] 2025-05-05 07:57:51,384 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-05 02:58:07] 2025-05-05 07:57:51,558 | INFO     | [payload] control thread has finished
[2025-05-05 02:58:07] 2025-05-05 07:57:51,649 | INFO     | [payload] execute_payloads thread has finished
[2025-05-05 02:58:07] 2025-05-05 07:57:51,706 | INFO     | [job] control thread has finished
[2025-05-05 02:58:07] 2025-05-05 07:57:52,005 | INFO     | [data] copytool_out thread has finished
[2025-05-05 02:58:07] 2025-05-05 07:57:55,390 | INFO     | [data] queue_monitor thread has finished
[2025-05-05 02:58:07] 2025-05-05 07:57:59,929 | INFO     | job.realtimelogging is not enabled
[2025-05-05 02:58:07] 2025-05-05 07:58:00,933 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-05 02:58:07] 2025-05-05 07:58:02,809 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139919044618048)>', '<ExcThread(monitor, started 139918265272064)>']
[2025-05-05 02:58:07] 2025-05-05 07:58:03,266 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-05 02:58:07] 2025-05-05 07:58:03,266 | INFO     | [monitor] control thread has ended
[2025-05-05 02:58:07] 2025-05-05 07:58:07,835 | INFO     | all workflow threads have been joined
[2025-05-05 02:58:07] 2025-05-05 07:58:07,835 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-05 02:58:07] 2025-05-05 07:58:07,835 | INFO     | traces error code: 0
[2025-05-05 02:58:07] 2025-05-05 07:58:07,835 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-05 02:58:07] 2025-05-05 07:58:07,886 [wrapper] ==== pilot stdout END ====
[2025-05-05 02:58:07] 2025-05-05 07:58:07,888 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-05 02:58:07] 2025-05-05 07:58:07,890 [wrapper] pilotpid: 15967
[2025-05-05 02:58:07] 2025-05-05 07:58:07,892 [wrapper] Pilot exit status: 0
[2025-05-05 02:58:07] 2025-05-05 07:58:07,899 [wrapper] pandaids: 6634040199
[2025-05-05 02:58:07] 2025-05-05 07:58:07,917 [wrapper] cleanup supervisor_pilot 29258 15968
[2025-05-05 02:58:07] 2025-05-05 07:58:07,919 [wrapper] Test setup, not cleaning
[2025-05-05 02:58:07] 2025-05-05 07:58:07,921 [wrapper] apfmon messages muted
[2025-05-05 02:58:07] 2025-05-05 07:58:07,923 [wrapper] ==== wrapper stdout END ====
[2025-05-05 02:58:07] 2025-05-05 07:58:07,925 [wrapper] ==== wrapper stderr END ====
[2025-05-05 02:58:07]  *** Error codes and diagnostics ***
[2025-05-05 02:58:07]     "exeErrorCode": 0,
[2025-05-05 02:58:07]     "exeErrorDiag": "",
[2025-05-05 02:58:07]     "pilotErrorCode": 0,
[2025-05-05 02:58:07]     "pilotErrorDiag": "",
[2025-05-05 02:58:07]  *** Listing of results directory ***
[2025-05-05 02:58:07] total 411288
[2025-05-05 02:58:07] -rwx------ 1 boinc boinc     37140 May  5 00:17 runpilot2-wrapper.sh
[2025-05-05 02:58:07] -rw-r--r-- 1 boinc boinc    495897 May  5 00:18 pilot3.tar.gz
[2025-05-05 02:58:07] -rw-r--r-- 1 boinc boinc      5111 May  5 00:19 queuedata.json
[2025-05-05 02:58:07] -rw-r--r-- 1 boinc boinc       100 May  5 02:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-05 02:58:07] -rwxr-xr-x 1 boinc boinc      7986 May  5 02:19 run_atlas
[2025-05-05 02:58:07] -rw-r--r-- 1 boinc boinc       105 May  5 02:19 job.xml
[2025-05-05 02:58:07] -rw-r--r-- 2 boinc boinc     17569 May  5 02:19 start_atlas.sh
[2025-05-05 02:58:07] drwxrwx--x 1 boinc boinc        76 May  5 02:19 shared
[2025-05-05 02:58:07] -rw-r--r-- 2 boinc boinc    508862 May  5 02:19 input.tar.gz
[2025-05-05 02:58:07] -rw-r--r-- 1 boinc boinc     10045 May  5 02:19 init_data.xml
[2025-05-05 02:58:07] -rw-r--r-- 2 boinc boinc 224178689 May  5 02:19 EVNT.44506061._000048.pool.root.1
[2025-05-05 02:58:07] -rw-r--r-- 1 boinc boinc         0 May  5 02:19 boinc_lockfile
[2025-05-05 02:58:07] -rw-r--r-- 1 boinc boinc      2554 May  5 02:19 pandaJob.out
[2025-05-05 02:58:07] -rw------- 1 boinc boinc       473 May  5 02:19 setup.sh.local
[2025-05-05 02:58:07] -rw------- 1 boinc boinc    990343 May  5 02:19 agis_schedconf.cvmfs.json
[2025-05-05 02:58:07] -rw------- 1 boinc boinc   1596726 May  5 02:19 agis_ddmendpoints.agis.ALL.json
[2025-05-05 02:58:07] drwx------ 1 boinc boinc       368 May  5 02:19 pilot3
[2025-05-05 02:58:07] -rw------- 1 boinc boinc        95 May  5 02:56 pilot_heartbeat.json
[2025-05-05 02:58:07] -rw------- 1 boinc boinc 191984843 May  5 02:57 HITS.44506063._001177.pool.root.1
[2025-05-05 02:58:07] -rw------- 1 boinc boinc      1025 May  5 02:57 memory_monitor_summary.json
[2025-05-05 02:58:07] -rw-r--r-- 1 boinc boinc       529 May  5 02:57 boinc_task_state.xml
[2025-05-05 02:58:07] -rw------- 1 boinc boinc    326119 May  5 02:57 log.44506063._001177.job.log.tgz.1
[2025-05-05 02:58:07] -rw-r--r-- 1 boinc boinc        27 May  5 02:57 wrapper_checkpoint.txt
[2025-05-05 02:58:07] -rw-r--r-- 1 boinc boinc      8192 May  5 02:57 boinc_mmap_file
[2025-05-05 02:58:07] -rw------- 1 boinc boinc      7675 May  5 02:57 heartbeat.json
[2025-05-05 02:58:07] -rw------- 1 boinc boinc      4551 May  5 02:58 pilotlog.txt
[2025-05-05 02:58:07] -rw------- 1 boinc boinc    257342 May  5 02:58 log.44506063._001177.job.log.1
[2025-05-05 02:58:07] -rw------- 1 boinc boinc       357 May  5 02:58 output.list
[2025-05-05 02:58:07] -rw-r--r-- 1 boinc boinc       620 May  5 02:58 runtime_log
[2025-05-05 02:58:07] -rw------- 1 boinc boinc    604160 May  5 02:58 result.tar.gz
[2025-05-05 02:58:07] -rw-r--r-- 1 boinc boinc     11496 May  5 02:58 runtime_log.err
[2025-05-05 02:58:07] -rw------- 1 boinc boinc       652 May  5 02:58 EnaNDm5N3V7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmaMFLDmssaOim.diag
[2025-05-05 02:58:07] -rw-r--r-- 1 boinc boinc     21000 May  5 02:58 stderr.txt
[2025-05-05 02:58:07] HITS file was successfully produced:
[2025-05-05 02:58:07] -rw------- 1 boinc boinc 191984843 May  5 02:57 shared/HITS.pool.root.1
[2025-05-05 02:58:07]  *** Contents of shared directory: ***
[2025-05-05 02:58:07] total 407528
[2025-05-05 02:58:07] -rw-r--r-- 2 boinc boinc     17569 May  5 02:19 start_atlas.sh
[2025-05-05 02:58:07] -rw-r--r-- 2 boinc boinc    508862 May  5 02:19 input.tar.gz
[2025-05-05 02:58:07] -rw-r--r-- 2 boinc boinc 224178689 May  5 02:19 ATLAS.root_0
[2025-05-05 02:58:07] -rw------- 1 boinc boinc 191984843 May  5 02:57 HITS.pool.root.1
[2025-05-05 02:58:07] -rw------- 1 boinc boinc    604160 May  5 02:58 result.tar.gz
02:58:09 (7707): run_atlas exited; CPU time 21183.763611
02:58:09 (7707): called boinc_finish(0)

</stderr_txt>
]]>

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