Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:42:40 (14874): wrapper (7.7.26015): starting
08:42:40 (14874): wrapper: running run_atlas (--nthreads 8)
[2025-05-05 08:42:40] Arguments: --nthreads 8
[2025-05-05 08:42:40] Threads: 8
[2025-05-05 08:42:40] Checking for CVMFS
[2025-05-05 08:42:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-05 08:42:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-05 08:42:41] Running cvmfs_config stat atlas.cern.ch
[2025-05-05 08:42:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-05 08:42:41] 2.11.2.0 15068 0 27000 145628 3 1 21180216 25165824 0 130560 0 0 0.000 1170 6647 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-05 08:42:41] CVMFS is ok
[2025-05-05 08:42:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-05 08:42:41] Checking for apptainer binary...
[2025-05-05 08:42:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-05 08:42:41] Running /usr/bin/apptainer --version
[2025-05-05 08:42:41] apptainer version 1.3.2-1.el7
[2025-05-05 08:42:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-05 08:42:41] cg-vwn315.simple-grid.lan
[2025-05-05 08:42:41] apptainer works
[2025-05-05 08:42:41] Set ATHENA_PROC_NUMBER=8
[2025-05-05 08:42:41] Set ATHENA_CORE_NUMBER=8
[2025-05-05 08:42:41] Starting ATLAS job with PandaID=6634094260
[2025-05-05 08:42:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:47:40 (7018): wrapper (7.7.26015): starting
08:47:40 (7018): wrapper: running run_atlas (--nthreads 8)
[2025-05-05 08:47:40] Arguments: --nthreads 8
[2025-05-05 08:47:40] Threads: 8
[2025-05-05 08:47:40] This job has been restarted, cleaning up previous attempt
[2025-05-05 08:47:40] Checking for CVMFS
[2025-05-05 08:47:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-05 08:47:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-05 08:47:40] Running cvmfs_config stat atlas.cern.ch
[2025-05-05 08:47:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-05 08:47:40] 2.11.2.0 15068 5 45712 145628 3 195 21963914 25165824 94 130560 0 56832 97.150 274425 39383 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-05 08:47:40] CVMFS is ok
[2025-05-05 08:47:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-05 08:47:40] Checking for apptainer binary...
[2025-05-05 08:47:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-05 08:47:40] Running /usr/bin/apptainer --version
[2025-05-05 08:47:40] apptainer version 1.3.2-1.el7
[2025-05-05 08:47:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-05 08:47:41] cg-vwn315.simple-grid.lan
[2025-05-05 08:47:41] apptainer works
[2025-05-05 08:47:41] Set ATHENA_PROC_NUMBER=8
[2025-05-05 08:47:41] Set ATHENA_CORE_NUMBER=8
[2025-05-05 08:47:41] Starting ATLAS job with PandaID=6634094260
[2025-05-05 08:47:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-05 10:36:14]  *** The last 200 lines of the pilot log: ***
[2025-05-05 10:36:14] 2025-05-05 08:35:53,663 | INFO     | mean x: 1746430889.5
[2025-05-05 10:36:14] 2025-05-05 08:35:53,663 | INFO     | mean y: 2392391.7735849055
[2025-05-05 10:36:14] 2025-05-05 08:35:53,663 | INFO     | -- intersect: -183171034248.73056
[2025-05-05 10:36:14] 2025-05-05 08:35:53,663 | INFO     | intersect: -183171034248.73056
[2025-05-05 10:36:14] 2025-05-05 08:35:53,663 | INFO     | chi2: 4.09324637409102
[2025-05-05 10:36:14] 2025-05-05 08:35:53,664 | INFO     | sum of square deviations: 319447850.0
[2025-05-05 10:36:14] 2025-05-05 08:35:53,664 | INFO     | sum of deviations: 36851402716.0
[2025-05-05 10:36:14] 2025-05-05 08:35:53,665 | INFO     | mean x: 1746430737.0
[2025-05-05 10:36:14] 2025-05-05 08:35:53,665 | INFO     | mean y: 2386632.920792079
[2025-05-05 10:36:14] 2025-05-05 08:35:53,665 | INFO     | -- intersect: -201465309596.01822
[2025-05-05 10:36:14] 2025-05-05 08:35:53,665 | INFO     | intersect: -201465309596.01822
[2025-05-05 10:36:14] 2025-05-05 08:35:53,665 | INFO     | chi2: 4.090227447284591
[2025-05-05 10:36:14] 2025-05-05 08:35:53,665 | INFO     | current chi2=4.090227447284591 (change=0.07375385037992757 %)
[2025-05-05 10:36:14] 2025-05-05 08:35:53,665 | INFO     | right removable region: 100
[2025-05-05 10:36:14] 2025-05-05 08:35:53,666 | INFO     | sum of square deviations: 319447850.0
[2025-05-05 10:36:14] 2025-05-05 08:35:53,666 | INFO     | sum of deviations: 14639854636.999989
[2025-05-05 10:36:14] 2025-05-05 08:35:53,667 | INFO     | mean x: 1746431042.0
[2025-05-05 10:36:14] 2025-05-05 08:35:53,667 | INFO     | mean y: 2465681.3168316833
[2025-05-05 10:36:14] 2025-05-05 08:35:53,667 | INFO     | -- intersect: -80034061684.33743
[2025-05-05 10:36:14] 2025-05-05 08:35:53,667 | INFO     | intersect: -80034061684.33743
[2025-05-05 10:36:14] 2025-05-05 08:35:53,667 | INFO     | chi2: 1.707862623987729
[2025-05-05 10:36:14] 2025-05-05 08:35:53,667 | INFO     | current chi2=1.707862623987729 (change=58.276085339060714 %)
[2025-05-05 10:36:14] 2025-05-05 08:35:53,668 | INFO     | sum of square deviations: 274312120.0
[2025-05-05 10:36:14] 2025-05-05 08:35:53,668 | INFO     | sum of deviations: -3774726482.000001
[2025-05-05 10:36:14] 2025-05-05 08:35:53,668 | INFO     | mean x: 1746431194.5
[2025-05-05 10:36:14] 2025-05-05 08:35:53,669 | INFO     | mean y: 2527932.5208333335
[2025-05-05 10:36:14] 2025-05-05 08:35:53,669 | INFO     | -- intersect: 24034641711.78091
[2025-05-05 10:36:14] 2025-05-05 08:35:53,669 | INFO     | intersect: 24034641711.78091
[2025-05-05 10:36:14] 2025-05-05 08:35:53,669 | INFO     | chi2: 0.37988375746966613
[2025-05-05 10:36:14] 2025-05-05 08:35:53,669 | INFO     | current chi2=0.37988375746966613 (change=77.75677316582605 %)
[2025-05-05 10:36:14] 2025-05-05 08:35:53,669 | INFO     | sum of square deviations: 233641590.0
[2025-05-05 10:36:14] 2025-05-05 08:35:53,670 | INFO     | sum of deviations: -7798501507.0
[2025-05-05 10:36:14] 2025-05-05 08:35:53,670 | INFO     | mean x: 1746431347.0
[2025-05-05 10:36:14] 2025-05-05 08:35:53,670 | INFO     | mean y: 2542249.2197802197
[2025-05-05 10:36:14] 2025-05-05 08:35:53,670 | INFO     | -- intersect: 58295021304.21825
[2025-05-05 10:36:14] 2025-05-05 08:35:53,670 | INFO     | intersect: 58295021304.21825
[2025-05-05 10:36:14] 2025-05-05 08:35:53,671 | INFO     | chi2: 0.07865595362019655
[2025-05-05 10:36:14] 2025-05-05 08:35:53,671 | INFO     | current chi2=0.07865595362019655 (change=79.29473106612691 %)
[2025-05-05 10:36:14] 2025-05-05 08:35:53,671 | INFO     | sum of square deviations: 197203697.5
[2025-05-05 10:36:14] 2025-05-05 08:35:53,672 | INFO     | sum of deviations: -4650062574.0
[2025-05-05 10:36:14] 2025-05-05 08:35:53,672 | INFO     | mean x: 1746431499.5
[2025-05-05 10:36:14] 2025-05-05 08:35:53,672 | INFO     | mean y: 2529045.023255814
[2025-05-05 10:36:14] 2025-05-05 08:35:53,672 | INFO     | -- intersect: 41183378374.07627
[2025-05-05 10:36:14] 2025-05-05 08:35:53,672 | INFO     | intersect: 41183378374.07627
[2025-05-05 10:36:14] 2025-05-05 08:35:53,672 | INFO     | chi2: 0.06151659717855587
[2025-05-05 10:36:14] 2025-05-05 08:35:53,673 | INFO     | current chi2=0.06151659717855587 (change=21.79028497245222 %)
[2025-05-05 10:36:14] 2025-05-05 08:35:53,673 | INFO     | left removable region: 40
[2025-05-05 10:36:14] 2025-05-05 08:35:53,673 | INFO     | sum of square deviations: 66959395.0
[2025-05-05 10:36:14] 2025-05-05 08:35:53,673 | INFO     | sum of deviations: 25801231.0
[2025-05-05 10:36:14] 2025-05-05 08:35:53,673 | INFO     | mean x: 1746431926.5
[2025-05-05 10:36:14] 2025-05-05 08:35:53,674 | INFO     | mean y: 2506173.3666666667
[2025-05-05 10:36:14] 2025-05-05 08:35:53,674 | INFO     | -- intersect: -670440372.2435725
[2025-05-05 10:36:14] 2025-05-05 08:35:53,674 | INFO     | intersect: -670440372.2435725
[2025-05-05 10:36:14] 2025-05-05 08:35:53,674 | INFO     | chi2: 5.502954161404444e-06
[2025-05-05 10:36:14] 2025-05-05 08:35:53,674 | INFO     | -- intersect: -670440372.2435725
[2025-05-05 10:36:14] 2025-05-05 08:35:53,674 | INFO     | current memory leak: 0.39 B/s (using 60 data points, chi2=0.00)
[2025-05-05 10:36:14] 2025-05-05 08:35:53,675 | INFO     | ..............................
[2025-05-05 10:36:14] 2025-05-05 08:35:53,675 | INFO     | . Timing measurements:
[2025-05-05 10:36:14] 2025-05-05 08:35:53,675 | INFO     | . get job = 0 s
[2025-05-05 10:36:14] 2025-05-05 08:35:53,675 | INFO     | . initial setup = 0 s
[2025-05-05 10:36:14] 2025-05-05 08:35:53,675 | INFO     | . payload setup = 3 s
[2025-05-05 10:36:14] 2025-05-05 08:35:53,676 | INFO     | . stage-in = 0 s
[2025-05-05 10:36:14] 2025-05-05 08:35:53,676 | INFO     | . payload execution = 6455 s
[2025-05-05 10:36:14] 2025-05-05 08:35:53,676 | INFO     | . stage-out = 1 s
[2025-05-05 10:36:14] 2025-05-05 08:35:53,676 | INFO     | . log creation = 0 s
[2025-05-05 10:36:14] 2025-05-05 08:35:53,676 | INFO     | ..............................
[2025-05-05 10:36:14] 2025-05-05 08:35:53,800 | INFO     | 
[2025-05-05 10:36:14] 2025-05-05 08:35:53,800 | INFO     | job summary report
[2025-05-05 10:36:14] 2025-05-05 08:35:53,801 | INFO     | --------------------------------------------------
[2025-05-05 10:36:14] 2025-05-05 08:35:53,801 | INFO     | PanDA job id: 6634094260
[2025-05-05 10:36:14] 2025-05-05 08:35:53,801 | INFO     | task id: 44506063
[2025-05-05 10:36:14] 2025-05-05 08:35:53,801 | INFO     | errors: (none)
[2025-05-05 10:36:14] 2025-05-05 08:35:53,801 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-05 10:36:14] 2025-05-05 08:35:53,801 | INFO     | pilot state: finished 
[2025-05-05 10:36:14] 2025-05-05 08:35:53,801 | INFO     | transexitcode: 0
[2025-05-05 10:36:14] 2025-05-05 08:35:53,801 | INFO     | exeerrorcode: 0
[2025-05-05 10:36:14] 2025-05-05 08:35:53,802 | INFO     | exeerrordiag: 
[2025-05-05 10:36:14] 2025-05-05 08:35:53,802 | INFO     | exitcode: 0
[2025-05-05 10:36:14] 2025-05-05 08:35:53,802 | INFO     | exitmsg: OK
[2025-05-05 10:36:14] 2025-05-05 08:35:53,802 | INFO     | cpuconsumptiontime: 44337 s
[2025-05-05 10:36:14] 2025-05-05 08:35:53,802 | INFO     | nevents: 400
[2025-05-05 10:36:14] 2025-05-05 08:35:53,802 | INFO     | neventsw: 0
[2025-05-05 10:36:14] 2025-05-05 08:35:53,802 | INFO     | pid: 17156
[2025-05-05 10:36:14] 2025-05-05 08:35:53,802 | INFO     | pgrp: 17156
[2025-05-05 10:36:14] 2025-05-05 08:35:53,802 | INFO     | corecount: 8
[2025-05-05 10:36:14] 2025-05-05 08:35:53,803 | INFO     | event service: False
[2025-05-05 10:36:14] 2025-05-05 08:35:53,803 | INFO     | sizes: {0: 2393727, 3: 2393933, 11: 2393961, 6462: 2420689, 6464: 2429632, 6466: 2429688, 6474: 2429986}
[2025-05-05 10:36:14] 2025-05-05 08:35:53,803 | INFO     | --------------------------------------------------
[2025-05-05 10:36:14] 2025-05-05 08:35:53,803 | INFO     | 
[2025-05-05 10:36:14] 2025-05-05 08:35:53,803 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2025-05-05 10:36:14] 2025-05-05 08:35:53,839 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,839 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,839 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,839 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,839 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,840 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,840 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,840 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,840 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,840 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,840 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,840 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,840 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,841 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,841 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,841 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,841 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,841 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-05 10:36:14] 2025-05-05 08:35:53,841 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,841 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-05 10:36:14] 2025-05-05 08:35:53,841 | INFO     | job 6634094260 has completed (purged errors)
[2025-05-05 10:36:14] 2025-05-05 08:35:53,842 | INFO     | overall cleanup function is called
[2025-05-05 10:36:14] 2025-05-05 08:35:54,850 | INFO     | --- collectZombieJob: --- 10, [17156]
[2025-05-05 10:36:14] 2025-05-05 08:35:54,850 | INFO     | zombie collector waiting for pid 17156
[2025-05-05 10:36:14] 2025-05-05 08:35:54,850 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-05 10:36:14] 2025-05-05 08:35:54,850 | INFO     | collected zombie processes
[2025-05-05 10:36:14] 2025-05-05 08:35:54,850 | INFO     | will attempt to kill all subprocesses of pid=17156
[2025-05-05 10:36:14] 2025-05-05 08:35:54,922 | INFO     | process IDs to be killed: [17156] (in reverse order)
[2025-05-05 10:36:14] 2025-05-05 08:35:55,024 | WARNING  | found no corresponding commands to process id(s)
[2025-05-05 10:36:14] 2025-05-05 08:35:55,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-05 10:36:14] 2025-05-05 08:35:55,027 | INFO     | did not find any defunct processes belonging to 17156
[2025-05-05 10:36:14] 2025-05-05 08:35:55,028 | INFO     | did not find any defunct processes belonging to 17156
[2025-05-05 10:36:14] 2025-05-05 08:35:55,029 | INFO     | ready for new job
[2025-05-05 10:36:14] 2025-05-05 08:35:55,029 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-05 10:36:14] 2025-05-05 08:35:55,030 | INFO     | **************************************
[2025-05-05 10:36:14] 2025-05-05 08:35:55,030 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-05 10:36:14] 2025-05-05 08:35:55,031 | INFO     | **************************************
[2025-05-05 10:36:14] 2025-05-05 08:35:55,031 | INFO     | 
[2025-05-05 10:36:14] 2025-05-05 08:35:55,031 | INFO     | pilot is running in a VM
[2025-05-05 10:36:14] 2025-05-05 08:35:55,031 | INFO     | architecture information:
[2025-05-05 10:36:14] 2025-05-05 08:35:55,032 | INFO     | executing command: cat /etc/os-release
[2025-05-05 10:36:14] 2025-05-05 08:35:55,059 | INFO     | cat /etc/os-release:
[2025-05-05 10:36:14] NAME="CentOS Linux"
[2025-05-05 10:36:14] VERSION="7 (Core)"
[2025-05-05 10:36:14] ID="centos"
[2025-05-05 10:36:14] ID_LIKE="rhel fedora"
[2025-05-05 10:36:14] VERSION_ID="7"
[2025-05-05 10:36:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-05 10:36:14] ANSI_COLOR="0;31"
[2025-05-05 10:36:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-05 10:36:14] HOME_URL="https://www.centos.org/"
[2025-05-05 10:36:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-05 10:36:14] 
[2025-05-05 10:36:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-05 10:36:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-05 10:36:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-05 10:36:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-05 10:36:14] 
[2025-05-05 10:36:14] 2025-05-05 08:35:55,060 | INFO     | **************************************
[2025-05-05 10:36:14] 2025-05-05 08:35:55,563 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2025-05-05 10:36:14] 2025-05-05 08:35:55,592 | INFO     | sufficient remaining disk space (497891147776 B)
[2025-05-05 10:36:14] 2025-05-05 08:35:55,592 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-05 10:36:14] 2025-05-05 08:35:55,593 | INFO     | current server update state: UPDATING_FINAL
[2025-05-05 10:36:14] 2025-05-05 08:35:55,593 | INFO     | update_server=False
[2025-05-05 10:36:14] 2025-05-05 08:35:55,593 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-05 10:36:14] 2025-05-05 08:35:55,593 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-05 10:36:14] 2025-05-05 08:35:55,865 | INFO     | all data control threads have been joined
[2025-05-05 10:36:14] 2025-05-05 08:35:56,099 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-05 10:36:14] 2025-05-05 08:35:56,197 | INFO     | all payload control threads have been joined
[2025-05-05 10:36:14] 2025-05-05 08:35:56,292 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-05 10:36:14] 2025-05-05 08:35:56,292 | INFO     | aborting loop
[2025-05-05 10:36:14] 2025-05-05 08:35:56,555 | INFO     | found 0 job(s) in 20 queues
[2025-05-05 10:36:14] 2025-05-05 08:35:56,556 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-05 10:36:14] 2025-05-05 08:35:56,556 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-05 10:36:14] 2025-05-05 08:35:56,599 | INFO     | [job] retrieve thread has finished
[2025-05-05 10:36:14] 2025-05-05 08:35:56,599 | INFO     | [job] queue monitor thread has finished
[2025-05-05 10:36:14] 2025-05-05 08:35:56,607 | INFO     | all job control threads have been joined
[2025-05-05 10:36:14] 2025-05-05 08:35:56,871 | INFO     | [data] control thread has finished
[2025-05-05 10:36:14] 2025-05-05 08:35:56,972 | INFO     | [payload] validate_post thread has finished
[2025-05-05 10:36:14] 2025-05-05 08:35:57,084 | INFO     | [job] validate thread has finished
[2025-05-05 10:36:14] 2025-05-05 08:35:57,086 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-05 10:36:14] 2025-05-05 08:35:57,114 | INFO     | [data] copytool_in thread has finished
[2025-05-05 10:36:14] 2025-05-05 08:35:57,202 | INFO     | [payload] control thread has finished
[2025-05-05 10:36:14] 2025-05-05 08:35:57,298 | INFO     | [job] job monitor thread has finished
[2025-05-05 10:36:14] 2025-05-05 08:35:57,449 | INFO     | [payload] validate_pre thread has finished
[2025-05-05 10:36:14] 2025-05-05 08:35:57,457 | INFO     | [payload] execute_payloads thread has finished
[2025-05-05 10:36:14] 2025-05-05 08:35:57,485 | INFO     | [payload] failed_post thread has finished
[2025-05-05 10:36:14] 2025-05-05 08:35:57,613 | INFO     | [job] control thread has finished
[2025-05-05 10:36:14] 2025-05-05 08:35:57,822 | INFO     | [job] create_data_payload thread has finished
[2025-05-05 10:36:14] 2025-05-05 08:35:59,092 | INFO     | [data] copytool_out thread has finished
[2025-05-05 10:36:14] 2025-05-05 08:36:00,105 | INFO     | [data] queue_monitor thread has finished
[2025-05-05 10:36:14] 2025-05-05 08:36:06,231 | INFO     | job.realtimelogging is not enabled
[2025-05-05 10:36:14] 2025-05-05 08:36:07,236 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-05 10:36:14] 2025-05-05 08:36:08,574 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140620824176448)>', '<ExcThread(monitor, started 140620173666048)>']
[2025-05-05 10:36:14] 2025-05-05 08:36:08,618 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-05 10:36:14] 2025-05-05 08:36:08,619 | INFO     | [monitor] control thread has ended
[2025-05-05 10:36:14] 2025-05-05 08:36:13,599 | INFO     | all workflow threads have been joined
[2025-05-05 10:36:14] 2025-05-05 08:36:13,600 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-05 10:36:14] 2025-05-05 08:36:13,600 | INFO     | traces error code: 0
[2025-05-05 10:36:14] 2025-05-05 08:36:13,600 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-05 10:36:14] 2025-05-05 08:36:13,739 [wrapper] ==== pilot stdout END ====
[2025-05-05 10:36:14] 2025-05-05 08:36:13,747 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-05 10:36:14] 2025-05-05 08:36:13,756 [wrapper] pilotpid: 10660
[2025-05-05 10:36:14] 2025-05-05 08:36:13,762 [wrapper] Pilot exit status: 0
[2025-05-05 10:36:14] 2025-05-05 08:36:13,803 [wrapper] pandaids: 6634094260 6634094260
[2025-05-05 10:36:14] 2025-05-05 08:36:13,839 [wrapper] cleanup supervisor_pilot 15274 10661
[2025-05-05 10:36:14] 2025-05-05 08:36:13,843 [wrapper] Test setup, not cleaning
[2025-05-05 10:36:14] 2025-05-05 08:36:13,855 [wrapper] apfmon messages muted
[2025-05-05 10:36:14] 2025-05-05 08:36:13,859 [wrapper] ==== wrapper stdout END ====
[2025-05-05 10:36:14] 2025-05-05 08:36:13,862 [wrapper] ==== wrapper stderr END ====
[2025-05-05 10:36:14]  *** Error codes and diagnostics ***
[2025-05-05 10:36:14]     "exeErrorCode": 0,
[2025-05-05 10:36:14]     "exeErrorDiag": "",
[2025-05-05 10:36:14]     "pilotErrorCode": 0,
[2025-05-05 10:36:14]     "pilotErrorDiag": "",
[2025-05-05 10:36:14]  *** Listing of results directory ***
[2025-05-05 10:36:14] total 634580
[2025-05-05 10:36:14] drwx------. 4 boinc boinc      4096 Apr  3 10:00 pilot3
[2025-05-05 10:36:14] -rw-r--r--. 1 boinc boinc    495897 May  5 07:18 pilot3.tar.gz
[2025-05-05 10:36:14] -rw-r--r--. 1 boinc boinc      5111 May  5 07:47 queuedata.json
[2025-05-05 10:36:14] -rwx------. 1 boinc boinc     37140 May  5 07:48 runpilot2-wrapper.sh
[2025-05-05 10:36:14] -rw-r--r--. 1 boinc boinc       100 May  5 08:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-05 10:36:14] -rwxr-xr-x. 1 boinc boinc      7986 May  5 08:42 run_atlas
[2025-05-05 10:36:14] -rw-r--r--. 1 boinc boinc       105 May  5 08:42 job.xml
[2025-05-05 10:36:14] -rw-r--r--. 3 boinc boinc 224983962 May  5 08:42 EVNT.44506061._000097.pool.root.1
[2025-05-05 10:36:14] -rw-r--r--. 3 boinc boinc 224983962 May  5 08:42 ATLAS.root_0
[2025-05-05 10:36:14] -rw-r--r--. 2 boinc boinc     17569 May  5 08:42 start_atlas.sh
[2025-05-05 10:36:14] drwxrwx--x. 2 boinc boinc        68 May  5 08:42 shared
[2025-05-05 10:36:14] -rw-r--r--. 2 boinc boinc    508872 May  5 08:42 input.tar.gz
[2025-05-05 10:36:14] -rw-r--r--. 1 boinc boinc         0 May  5 08:42 boinc_lockfile
[2025-05-05 10:36:14] -rw-------. 1 boinc boinc   1596670 May  5 08:42 agis_ddmendpoints.agis.ALL.json
[2025-05-05 10:36:14] -rw-r--r--. 1 boinc boinc      6370 May  5 08:47 init_data.xml
[2025-05-05 10:36:14] -rw-r--r--. 1 boinc boinc      2552 May  5 08:47 pandaJob.out
[2025-05-05 10:36:14] -rw-------. 1 boinc boinc       424 May  5 08:47 setup.sh.local
[2025-05-05 10:36:14] -rw-------. 1 boinc boinc    990395 May  5 08:47 agis_schedconf.cvmfs.json
[2025-05-05 10:36:14] -rw-------. 1 boinc boinc        96 May  5 10:35 pilot_heartbeat.json
[2025-05-05 10:36:14] -rw-r--r--. 1 boinc boinc       530 May  5 10:35 boinc_task_state.xml
[2025-05-05 10:36:14] -rw-------. 1 boinc boinc 194255386 May  5 10:35 HITS.44506063._002401.pool.root.1
[2025-05-05 10:36:14] -rw-------. 1 boinc boinc      1016 May  5 10:35 memory_monitor_summary.json
[2025-05-05 10:36:14] -rw-------. 1 boinc boinc    301414 May  5 10:35 log.44506063._002401.job.log.tgz.1
[2025-05-05 10:36:14] -rw-------. 1 boinc boinc      7674 May  5 10:35 heartbeat.json
[2025-05-05 10:36:14] -rw-r--r--. 1 boinc boinc        27 May  5 10:36 wrapper_checkpoint.txt
[2025-05-05 10:36:14] -rw-r--r--. 1 boinc boinc      8192 May  5 10:36 boinc_mmap_file
[2025-05-05 10:36:14] -rw-------. 1 boinc boinc      4489 May  5 10:36 pilotlog.txt
[2025-05-05 10:36:14] -rw-------. 1 boinc boinc    580000 May  5 10:36 log.44506063._002401.job.log.1
[2025-05-05 10:36:14] -rw-------. 1 boinc boinc       357 May  5 10:36 output.list
[2025-05-05 10:36:14] -rw-r--r--. 1 boinc boinc       620 May  5 10:36 runtime_log
[2025-05-05 10:36:14] -rw-------. 1 boinc boinc    901120 May  5 10:36 result.tar.gz
[2025-05-05 10:36:14] -rw-r--r--. 1 boinc boinc     11115 May  5 10:36 runtime_log.err
[2025-05-05 10:36:14] -rw-------. 1 boinc boinc       776 May  5 10:36 6ZALDmor3V7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmAA0LDmqy4AMn.diag
[2025-05-05 10:36:14] -rw-r--r--. 1 boinc boinc     22177 May  5 10:36 stderr.txt
[2025-05-05 10:36:14] HITS file was successfully produced:
[2025-05-05 10:36:14] -rw-------. 1 boinc boinc 194255386 May  5 10:35 shared/HITS.pool.root.1
[2025-05-05 10:36:14]  *** Contents of shared directory: ***
[2025-05-05 10:36:14] total 410816
[2025-05-05 10:36:14] -rw-r--r--. 3 boinc boinc 224983962 May  5 08:42 ATLAS.root_0
[2025-05-05 10:36:14] -rw-r--r--. 2 boinc boinc     17569 May  5 08:42 start_atlas.sh
[2025-05-05 10:36:14] -rw-r--r--. 2 boinc boinc    508872 May  5 08:42 input.tar.gz
[2025-05-05 10:36:14] -rw-------. 1 boinc boinc 194255386 May  5 10:35 HITS.pool.root.1
[2025-05-05 10:36:14] -rw-------. 1 boinc boinc    901120 May  5 10:36 result.tar.gz
10:36:15 (7018): run_atlas exited; CPU time 44371.340780
10:36:15 (7018): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN