Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-05 07:05:30 (5976): Detected: vboxwrapper 26206
2025-05-05 07:05:30 (5976): Detected: BOINC client v7.20.2
2025-05-05 07:05:31 (5976): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-05-05 07:05:31 (5976): Successfully copied 'init_data.xml' to the shared directory.
2025-05-05 07:05:32 (5976): Create VM. (boinc_60be71d4d1679323, slot#19)
2025-05-05 07:05:32 (5976): Setting Memory Size for VM. (4100MB)
2025-05-05 07:05:32 (5976): Setting CPU Count for VM. (1)
2025-05-05 07:05:33 (5976): Setting Chipset Options for VM.
2025-05-05 07:05:33 (5976): Setting Graphics Controller Options for VM.
2025-05-05 07:05:33 (5976): Setting Boot Options for VM.
2025-05-05 07:05:34 (5976): Setting Network Configuration for NAT.
2025-05-05 07:05:34 (5976): Enabling VM Network Access.
2025-05-05 07:05:34 (5976): Disabling USB Support for VM.
2025-05-05 07:05:34 (5976): Disabling COM Port Support for VM.
2025-05-05 07:05:35 (5976): Disabling LPT Port Support for VM.
2025-05-05 07:05:35 (5976): Disabling Audio Support for VM.
2025-05-05 07:05:35 (5976): Disabling Clipboard Support for VM.
2025-05-05 07:05:36 (5976): Disabling Drag and Drop Support for VM.
2025-05-05 07:05:36 (5976): Adding storage controller(s) to VM.
2025-05-05 07:05:36 (5976): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-05 07:05:39 (5976): Adding VirtualBox Guest Additions to VM.
2025-05-05 07:05:39 (5976): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-05 07:05:39 (5976): forwarding host port 57530 to guest port 80
2025-05-05 07:05:40 (5976): Enabling remote desktop for VM.
2025-05-05 07:05:40 (5976): Required extension pack not installed, remote desktop not enabled.
2025-05-05 07:05:40 (5976): Enabling shared directory for VM.
2025-05-05 07:05:40 (5976): Starting VM using VBoxManage interface. (boinc_60be71d4d1679323, slot#19)
2025-05-05 07:05:47 (5976): Successfully started VM. (PID = '12476')
2025-05-05 07:05:47 (5976): Reporting VM Process ID to BOINC.
2025-05-05 07:05:47 (5976): Guest Log: BIOS: VirtualBox 7.1.6
2025-05-05 07:05:47 (5976): Guest Log: CPUID EDX: 0x178bfbff
2025-05-05 07:05:47 (5976): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-05 07:05:47 (5976): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-05 07:05:47 (5976): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-05 07:05:47 (5976): Detected: Web Application Enabled (http://localhost:57530)
2025-05-05 07:05:47 (5976): Preference change detected
2025-05-05 07:05:47 (5976): Setting CPU throttle for VM. (100%)
2025-05-05 07:05:47 (5976): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-05 07:05:49 (5976): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-05 07:05:49 (5976): Guest Log: BIOS: Booting from Hard Disk...
2025-05-05 07:05:52 (5976): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-05 07:05:52 (5976): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-05 07:05:52 (5976): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-05 07:05:56 (5976): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-05 07:05:56 (5976): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-05 07:06:06 (5976): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-05 07:06:06 (5976): Guest Log: 00:00:00.000137 main     Log opened 2025-05-05T07:06:05.180117000Z
2025-05-05 07:06:06 (5976): Guest Log: 00:00:00.000285 main     OS Product: Linux
2025-05-05 07:06:06 (5976): Guest Log: 00:00:00.000342 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-05 07:06:06 (5976): Guest Log: 00:00:00.000387 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-05 07:06:06 (5976): Guest Log: 00:00:00.000430 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-05 07:06:06 (5976): Guest Log: 00:00:00.000431 main     Process ID: 1273
2025-05-05 07:06:06 (5976): Guest Log: 00:00:00.000432 main     Package type: LINUX_64BITS_GENERIC
2025-05-05 07:06:06 (5976): Guest Log: 00:00:00.001800 main     5.2.32 r132073 started. Verbose level = 0
2025-05-05 07:06:06 (5976): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-05 07:06:06 (5976): Guest Log: [INFO] Mounting shared directory
2025-05-05 07:06:06 (5976): Guest Log: [INFO] Checking for init_data.xml
2025-05-05 07:06:10 (5976): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-05 07:06:10 (5976): Guest Log: [INFO] Detected branch: prod
2025-05-05 07:06:10 (5976): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-05 07:06:10 (5976): Guest Log: Copying input files
2025-05-05 07:06:11 (5976): Guest Log: Copied input files into RunAtlas.
2025-05-05 07:06:11 (5976): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-05 07:06:11 (5976): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-05 07:06:11 (5976): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-05 07:06:11 (5976): Guest Log: Further information can be found at the LHC@home message board.
2025-05-05 07:06:16 (5976): Guest Log: 00:00:10.021254 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 955 162 000ns (GuestNow=1 746 425 176 245 509 000 ns GuestLast=1 746 428 765 200 671 000 ns fSetTimeLastLoop=true )
2025-05-05 07:06:21 (5976): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-05 07:06:22 (5976): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-05 07:06:22 (5976): Guest Log: 2.6.3.0 1542 0 30236 145627 4 1 3119946 4096000 0 65024 0 0 n/a 1171 442 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-05 07:06:23 (5976): Guest Log: copied the webapp to /var/www
2025-05-05 07:06:23 (5976): Guest Log: core_number=1
2025-05-05 07:06:23 (5976): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-05 07:06:23 (5976): Guest Log:  *** Starting ATLAS job. (PandaID=6634040365 taskID=44506063) ***
2025-05-05 08:47:12 (5976): Status Report: Elapsed Time: '6000.399645'
2025-05-05 08:47:12 (5976): Status Report: CPU Time: '5325.187500'
2025-05-05 10:28:45 (5976): Status Report: Elapsed Time: '12000.421471'
2025-05-05 10:28:45 (5976): Status Report: CPU Time: '11397.156250'
2025-05-05 12:09:49 (5976): Status Report: Elapsed Time: '18000.421471'
2025-05-05 12:09:49 (5976): Status Report: CPU Time: '17431.328125'
2025-05-05 13:51:47 (5976): Status Report: Elapsed Time: '24000.794895'
2025-05-05 13:51:47 (5976): Status Report: CPU Time: '23514.734375'
2025-05-05 15:53:17 (5976): Status Report: Elapsed Time: '30001.449715'
2025-05-05 15:53:17 (5976): Status Report: CPU Time: '30778.640625'
2025-05-05 17:34:38 (5976): Status Report: Elapsed Time: '36002.232643'
2025-05-05 17:34:38 (5976): Status Report: CPU Time: '36830.390625'
2025-05-05 19:35:05 (5976): Status Report: Elapsed Time: '42002.975973'
2025-05-05 19:35:11 (5976): Status Report: CPU Time: '44024.453125'
2025-05-05 20:57:11 (5976): VM state change detected. (old = 'running', new = 'paused')
2025-05-05 20:59:29 (5976): VM state change detected. (old = 'paused', new = 'running')
2025-05-05 22:25:03 (5976): Status Report: Elapsed Time: '48003.867332'
2025-05-05 22:25:03 (5976): Status Report: CPU Time: '54057.687500'
2025-05-06 01:49:37 (5976): Status Report: Elapsed Time: '54004.420134'
2025-05-06 01:49:37 (5976): Status Report: CPU Time: '66288.234375'
2025-05-06 01:53:59 (5976): Guest Log:  *** Job finished ***
2025-05-06 01:54:00 (5976): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:19,303 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:20,305 | INFO     | [job] queue monitor thread has finished
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:23,257 | INFO     | [data] queue_monitor thread has finished
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:24,406 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140263935985472)>', '<ExcThread(monitor, started 140263355836160)>']
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:25,320 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:25,320 | INFO     | [monitor] control thread has ended
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:29,412 | INFO     | all workflow threads have been joined
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:29,412 | INFO     | end of generic workflow (traces error code: 0)
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:29,412 | INFO     | traces error code: 0
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:29,413 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:29,579 [wrapper] ==== pilot stdout END ====
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:29,583 [wrapper] ==== wrapper stdout RESUME ====
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:29,587 [wrapper] pilotpid: 5814
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:29,590 [wrapper] Pilot exit status: 0
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:30,132 [wrapper] pandaids: 6634040365
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:30,154 [wrapper] cleanup supervisor_pilot 32275 5815
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:30,158 [wrapper] Test setup, not cleaning
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:30,162 [wrapper] apfmon messages muted
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:30,166 [wrapper] ==== wrapper stdout END ====
2025-05-06 01:54:00 (5976): Guest Log: 2025-05-06 00:51:30,170 [wrapper] ==== wrapper stderr END ====
2025-05-06 01:54:00 (5976): Guest Log:  *** Error codes and diagnostics ***
2025-05-06 01:54:00 (5976): Guest Log:     "exeErrorCode": 0,
2025-05-06 01:54:00 (5976): Guest Log:     "exeErrorDiag": "",
2025-05-06 01:54:00 (5976): Guest Log:     "pilotErrorCode": 0,
2025-05-06 01:54:00 (5976): Guest Log:     "pilotErrorDiag": "",
2025-05-06 01:54:00 (5976): Guest Log:  *** Listing of results directory ***
2025-05-06 01:54:00 (5976): Guest Log: total 221636
2025-05-06 01:54:00 (5976): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May  5 05:12 pilot3.tar.gz
2025-05-06 01:54:00 (5976): Guest Log: -rwx------. 1 atlas atlas     37140 May  5 05:17 runpilot2-wrapper.sh
2025-05-06 01:54:00 (5976): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May  5 05:17 queuedata.json
2025-05-06 01:54:00 (5976): Guest Log: -rwxr-xr-x. 1 atlas atlas     10547 May  5 06:06 init_data.xml
2025-05-06 01:54:00 (5976): Guest Log: -rwxr-xr-x. 1 atlas atlas    508875 May  5 06:06 input.tar.gz
2025-05-06 01:54:00 (5976): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 May  5 06:06 start_atlas.sh
2025-05-06 01:54:00 (5976): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May  5 06:06 EVNT.44506061._000054.pool.root.1 -> /data/./ATLAS.root_0
2025-05-06 01:54:00 (5976): Guest Log: -rw-r--r--. 1 atlas atlas      2555 May  5 06:06 pandaJob.out
2025-05-06 01:54:00 (5976): Guest Log: -rw-------. 1 atlas atlas       424 May  5 06:06 setup.sh.local
2025-05-06 01:54:00 (5976): Guest Log: -rw-------. 1 atlas atlas    993688 May  5 06:07 agis_schedconf.cvmfs.json
2025-05-06 01:54:00 (5976): Guest Log: drwx------. 4 atlas atlas      4096 May  5 06:08 pilot3
2025-05-06 01:54:00 (5976): Guest Log: -rw-------. 1 atlas atlas 209942577 May  6 00:50 HITS.44506063._001343.pool.root.1
2025-05-06 01:54:00 (5976): Guest Log: -rw-------. 1 atlas atlas        95 May  6 00:50 pilot_heartbeat.json
2025-05-06 01:54:00 (5976): Guest Log: -rw-------. 1 atlas atlas      1024 May  6 00:50 memory_monitor_summary.json
2025-05-06 01:54:00 (5976): Guest Log: -rw-------. 1 atlas atlas   1596741 May  6 00:50 agis_ddmendpoints.agis.ALL.json
2025-05-06 01:54:00 (5976): Guest Log: -rw-------. 1 atlas atlas    754383 May  6 00:51 log.44506063._001343.job.log.tgz.1
2025-05-06 01:54:00 (5976): Guest Log: -rw-------. 1 atlas atlas      7678 May  6 00:51 heartbeat.json
2025-05-06 01:54:00 (5976): Guest Log: -rw-------. 1 atlas atlas      4536 May  6 00:51 pilotlog.txt
2025-05-06 01:54:00 (5976): Guest Log: -rw-------. 1 atlas atlas   5862632 May  6 00:51 log.44506063._001343.job.log.1
2025-05-06 01:54:00 (5976): Guest Log: -rw-------. 1 atlas atlas       357 May  6 00:51 output.list
2025-05-06 01:54:00 (5976): Guest Log: -rw-r--r--. 1 atlas atlas       620 May  6 00:51 runtime_log
2025-05-06 01:54:00 (5976): Guest Log: -rw-------. 1 atlas atlas   6635520 May  6 00:51 result.tar.gz
2025-05-06 01:54:00 (5976): Guest Log: -rw-r--r--. 1 atlas atlas     10811 May  6 00:51 runtime_log.err
2025-05-06 01:54:00 (5976): Guest Log: -rw-------. 1 atlas atlas       658 May  6 00:51 3FvLDmgN3V7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm5zzLDmb8k9Zn.diag
2025-05-06 01:54:00 (5976): Guest Log: Looking for outputfile HITS.44506063._001343.pool.root.1
2025-05-06 01:54:00 (5976): Guest Log: HITS file was successfully produced
2025-05-06 01:54:00 (5976): Guest Log: -rw-------. 1 atlas atlas 209942577 May  6 00:50 /home/atlas/RunAtlas/HITS.44506063._001343.pool.root.1
2025-05-06 01:54:00 (5976): Guest Log: Successfully finished the ATLAS job!
2025-05-06 01:54:00 (5976): Guest Log: Copying the results back to the shared directory!
2025-05-06 01:54:00 (5976): Guest Log:  *** Contents of shared directory: ***
2025-05-06 01:54:00 (5976): Guest Log: total 433020
2025-05-06 01:54:00 (5976): Guest Log: -rwxrwxrwx. 1 root root 226283623 May  5 06:05 ATLAS.root_0
2025-05-06 01:54:00 (5976): Guest Log: -rwxrwxrwx. 1 root root 209942577 May  6  2025 HITS.pool.root.1
2025-05-06 01:54:00 (5976): Guest Log: -rwxrwxrwx. 1 root root     10547 May  5 06:05 init_data.xml
2025-05-06 01:54:00 (5976): Guest Log: -rwxrwxrwx. 1 root root    508875 May  5 05:24 input.tar.gz
2025-05-06 01:54:00 (5976): Guest Log: -rwxrwxrwx. 1 root root   6635520 May  6  2025 result.tar.gz
2025-05-06 01:54:00 (5976): Guest Log: -rwxrwxrwx. 1 root root     17569 May  5 05:24 start_atlas.sh
2025-05-06 01:54:00 (5976): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-06 01:54:00 (5976): VM Completion File Detected.
2025-05-06 01:54:00 (5976): Powering off VM.
2025-05-06 01:54:02 (5976): Successfully stopped VM.
2025-05-06 01:54:02 (5976): Deregistering VM. (boinc_60be71d4d1679323, slot#19)
2025-05-06 01:54:02 (5976): Removing network bandwidth throttle group from VM.
2025-05-06 01:54:02 (5976): Removing VM from VirtualBox.
01:54:07 (5976): called boinc_finish(0)

</stderr_txt>
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