Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
18:26:08 (1241555): wrapper (7.7.26015): starting
18:26:08 (1241555): wrapper: running run_atlas (--nthreads 12)
[2025-05-01 18:26:08] Arguments: --nthreads 12
[2025-05-01 18:26:08] Threads: 12
[2025-05-01 18:26:08] Checking for CVMFS
[2025-05-01 18:26:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-01 18:26:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-01 18:26:08] Running cvmfs_config stat atlas.cern.ch
[2025-05-01 18:26:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-01 18:26:09] 2.9.2.0 1378913 9322 76288 145494 3 55 14777402 36864001 0 130560 0 10472239 99.993 2636899 2152 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-05-01 18:26:09] CVMFS is ok
[2025-05-01 18:26:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-01 18:26:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-01 18:26:09] Further information can be found at the LHC@home message board.
[2025-05-01 18:26:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-01 18:26:09] Checking for apptainer binary...
[2025-05-01 18:26:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-01 18:26:09] Running /usr/bin/apptainer --version
[2025-05-01 18:26:09] apptainer version 1.3.6-6.1
[2025-05-01 18:26:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-01 18:26:09] thserv06
[2025-05-01 18:26:09] apptainer works
[2025-05-01 18:26:09] Set ATHENA_PROC_NUMBER=12
[2025-05-01 18:26:09] Set ATHENA_CORE_NUMBER=12
[2025-05-01 18:26:09] Starting ATLAS job with PandaID=6622355864
[2025-05-01 18:26:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-01 19:17:07]  *** The last 200 lines of the pilot log: ***
[2025-05-01 19:17:07]  is_tar=False
[2025-05-01 19:17:07]  lfn=log.44292257._048954.job.log.tgz.1
[2025-05-01 19:17:07]  mtime=0
[2025-05-01 19:17:07]  protocol_id=None
[2025-05-01 19:17:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-05-01 19:17:07]  replicas=None
[2025-05-01 19:17:07]  scope=mc23_13p6TeV
[2025-05-01 19:17:07]  status=None
[2025-05-01 19:17:07]  status_code=0
[2025-05-01 19:17:07]  storage_token=
[2025-05-01 19:17:07]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6622355864/log.44292257._048954.job.log.tgz.1
[2025-05-01 19:17:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ed/3f/log.44292257._048954.job.log.tgz.1
[2025-05-01 19:17:07]  workdir=None
[2025-05-01 19:17:07] ]
[2025-05-01 19:17:07] 2025-05-01 17:16:46,804 | INFO     | transferring file log.44292257._048954.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6622355864/log.44292257._048954.job.log.tgz.1 to /local/data/boinc/
[2025-05-01 19:17:07] 2025-05-01 17:16:46,804 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6622355864/log.44292257._048954.job.log.tgz.1 /local/data/boinc/slots/0/log.44292257._0489
[2025-05-01 19:17:07] 2025-05-01 17:16:46,834 | INFO     | adding to output.list: log.44292257._048954.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ed/3f/log.44292257._048954.job.log.tg
[2025-05-01 19:17:07] 2025-05-01 17:16:46,834 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-01 19:17:07] 2025-05-01 17:16:46,835 | INFO     | summary of transferred files:
[2025-05-01 19:17:07] 2025-05-01 17:16:46,835 | INFO     |  -- lfn=log.44292257._048954.job.log.tgz.1, status_code=0, status=transferred
[2025-05-01 19:17:07] 2025-05-01 17:16:46,835 | INFO     | stage-out finished correctly
[2025-05-01 19:17:07] 2025-05-01 17:16:47,175 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-01 19:17:07] 2025-05-01 17:16:47,295 | INFO     | job 6622355864 has state=finished
[2025-05-01 19:17:07] 2025-05-01 17:16:47,296 | INFO     | preparing for final server update for job 6622355864 in state='finished'
[2025-05-01 19:17:07] 2025-05-01 17:16:47,297 | INFO     | this job has now completed (state=finished)
[2025-05-01 19:17:07] 2025-05-01 17:16:47,297 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-01 19:17:07] 2025-05-01 17:16:47,297 | INFO     | log transfer has been attempted: DONE
[2025-05-01 19:17:07] 2025-05-01 17:16:47,297 | INFO     | job 6622355864 has finished - writing final server update
[2025-05-01 19:17:07] 2025-05-01 17:16:47,298 | INFO     | total number of processed events: 400 (read)
[2025-05-01 19:17:07] 2025-05-01 17:16:47,304 | INFO     | executing command: lscpu
[2025-05-01 19:17:07] 2025-05-01 17:16:47,363 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-01 19:17:07] 2025-05-01 17:16:48,469 | WARNING  | process 1252329 can no longer be monitored (due to stat problems) - aborting
[2025-05-01 19:17:07] 2025-05-01 17:16:48,469 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6622355864/memory_monitor_summary.json (trf name=prmon)
[2025-05-01 19:17:07] 2025-05-01 17:16:48,581 | INFO     | number of running child processes to parent process 1252329: 1
[2025-05-01 19:17:07] 2025-05-01 17:16:48,581 | INFO     | maximum number of monitored processes: 6
[2025-05-01 19:17:07] 2025-05-01 17:16:51,084 | INFO     | monitor loop #232: job 0:6622355864 is in state 'finished'
[2025-05-01 19:17:07] 2025-05-01 17:16:51,085 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-01 19:17:07] 2025-05-01 17:16:53,587 | INFO     | monitor loop #233: job 0:6622355864 is in state 'finished'
[2025-05-01 19:17:07] 2025-05-01 17:16:53,588 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-01 19:17:07] 2025-05-01 17:16:54,275 | INFO     | CPU arch script returned: x86-64-v4
[2025-05-01 19:17:07] 2025-05-01 17:16:54,276 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6622355864/memory_monitor_summary.json (trf name=prmon)
[2025-05-01 19:17:07] 2025-05-01 17:16:54,277 | INFO     | extracted standard info from prmon json
[2025-05-01 19:17:07] 2025-05-01 17:16:54,277 | INFO     | extracted standard memory fields from prmon json
[2025-05-01 19:17:07] 2025-05-01 17:16:54,277 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-01 19:17:07] 2025-05-01 17:16:54,278 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-01 19:17:07] 2025-05-01 17:16:54,278 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-01 19:17:07] 2025-05-01 17:16:54,280 | INFO     | fitting pss+swap vs Time
[2025-05-01 19:17:07] 2025-05-01 17:16:54,281 | INFO     | sum of square deviations: 22960430.5
[2025-05-01 19:17:07] 2025-05-01 17:16:54,282 | INFO     | sum of deviations: 9572524094.5
[2025-05-01 19:17:07] 2025-05-01 17:16:54,282 | INFO     | mean x: 1746118373.5
[2025-05-01 19:17:07] 2025-05-01 17:16:54,282 | INFO     | mean y: 2768633.1666666665
[2025-05-01 19:17:07] 2025-05-01 17:16:54,282 | INFO     | -- intersect: -727978364045.417
[2025-05-01 19:17:07] 2025-05-01 17:16:54,283 | INFO     | intersect: -727978364045.417
[2025-05-01 19:17:07] 2025-05-01 17:16:54,283 | INFO     | chi2: 1.1653287933929042
[2025-05-01 19:17:07] 2025-05-01 17:16:54,283 | INFO     | -- intersect: -727978364045.417
[2025-05-01 19:17:07] 2025-05-01 17:16:54,283 | INFO     | current memory leak: 416.91 B/s (using 42 data points, chi2=1.17)
[2025-05-01 19:17:07] 2025-05-01 17:16:54,284 | INFO     | ..............................
[2025-05-01 19:17:07] 2025-05-01 17:16:54,284 | INFO     | . Timing measurements:
[2025-05-01 19:17:07] 2025-05-01 17:16:54,285 | INFO     | . get job = 0 s
[2025-05-01 19:17:07] 2025-05-01 17:16:54,285 | INFO     | . initial setup = 1 s
[2025-05-01 19:17:07] 2025-05-01 17:16:54,285 | INFO     | . payload setup = 9 s
[2025-05-01 19:17:07] 2025-05-01 17:16:54,285 | INFO     | . stage-in = 0 s
[2025-05-01 19:17:07] 2025-05-01 17:16:54,285 | INFO     | . payload execution = 2990 s
[2025-05-01 19:17:07] 2025-05-01 17:16:54,285 | INFO     | . stage-out = 0 s
[2025-05-01 19:17:07] 2025-05-01 17:16:54,285 | INFO     | . log creation = 0 s
[2025-05-01 19:17:07] 2025-05-01 17:16:54,286 | INFO     | ..............................
[2025-05-01 19:17:07] 2025-05-01 17:16:54,771 | INFO     | 
[2025-05-01 19:17:07] 2025-05-01 17:16:54,771 | INFO     | job summary report
[2025-05-01 19:17:07] 2025-05-01 17:16:54,771 | INFO     | --------------------------------------------------
[2025-05-01 19:17:07] 2025-05-01 17:16:54,772 | INFO     | PanDA job id: 6622355864
[2025-05-01 19:17:07] 2025-05-01 17:16:54,772 | INFO     | task id: 44292257
[2025-05-01 19:17:07] 2025-05-01 17:16:54,772 | INFO     | errors: (none)
[2025-05-01 19:17:07] 2025-05-01 17:16:54,772 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-01 19:17:07] 2025-05-01 17:16:54,772 | INFO     | pilot state: finished 
[2025-05-01 19:17:07] 2025-05-01 17:16:54,772 | INFO     | transexitcode: 0
[2025-05-01 19:17:07] 2025-05-01 17:16:54,773 | INFO     | exeerrorcode: 0
[2025-05-01 19:17:07] 2025-05-01 17:16:54,773 | INFO     | exeerrordiag: 
[2025-05-01 19:17:07] 2025-05-01 17:16:54,773 | INFO     | exitcode: 0
[2025-05-01 19:17:07] 2025-05-01 17:16:54,773 | INFO     | exitmsg: OK
[2025-05-01 19:17:07] 2025-05-01 17:16:54,773 | INFO     | cpuconsumptiontime: 26281 s
[2025-05-01 19:17:07] 2025-05-01 17:16:54,773 | INFO     | nevents: 400
[2025-05-01 19:17:07] 2025-05-01 17:16:54,773 | INFO     | neventsw: 0
[2025-05-01 19:17:07] 2025-05-01 17:16:54,774 | INFO     | pid: 1252329
[2025-05-01 19:17:07] 2025-05-01 17:16:54,774 | INFO     | pgrp: 1252329
[2025-05-01 19:17:07] 2025-05-01 17:16:54,774 | INFO     | corecount: 12
[2025-05-01 19:17:07] 2025-05-01 17:16:54,774 | INFO     | event service: False
[2025-05-01 19:17:07] 2025-05-01 17:16:54,774 | INFO     | sizes: {0: 2393728, 8: 2393934, 11: 2393962, 3004: 2419186, 3005: 2428189, 3012: 2428303}
[2025-05-01 19:17:07] 2025-05-01 17:16:54,774 | INFO     | --------------------------------------------------
[2025-05-01 19:17:07] 2025-05-01 17:16:54,774 | INFO     | 
[2025-05-01 19:17:07] 2025-05-01 17:16:54,775 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-05-01 19:17:07] 2025-05-01 17:16:54,806 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,807 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,807 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,807 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,807 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,808 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,808 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,808 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,808 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,808 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,808 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,808 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,809 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,809 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,809 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,809 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,809 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,809 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-01 19:17:07] 2025-05-01 17:16:54,810 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,810 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-01 19:17:07] 2025-05-01 17:16:54,810 | INFO     | job 6622355864 has completed (purged errors)
[2025-05-01 19:17:07] 2025-05-01 17:16:54,810 | INFO     | overall cleanup function is called
[2025-05-01 19:17:07] 2025-05-01 17:16:55,819 | INFO     | --- collectZombieJob: --- 10, [1252329]
[2025-05-01 19:17:07] 2025-05-01 17:16:55,820 | INFO     | zombie collector waiting for pid 1252329
[2025-05-01 19:17:07] 2025-05-01 17:16:55,820 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-01 19:17:07] 2025-05-01 17:16:55,820 | INFO     | collected zombie processes
[2025-05-01 19:17:07] 2025-05-01 17:16:55,820 | INFO     | will attempt to kill all subprocesses of pid=1252329
[2025-05-01 19:17:07] 2025-05-01 17:16:56,015 | INFO     | process IDs to be killed: [1252329] (in reverse order)
[2025-05-01 19:17:07] 2025-05-01 17:16:56,079 | WARNING  | found no corresponding commands to process id(s)
[2025-05-01 19:17:07] 2025-05-01 17:16:56,079 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-01 19:17:07] 2025-05-01 17:16:56,083 | INFO     | did not find any defunct processes belonging to 1252329
[2025-05-01 19:17:07] 2025-05-01 17:16:56,086 | INFO     | did not find any defunct processes belonging to 1252329
[2025-05-01 19:17:07] 2025-05-01 17:16:56,087 | INFO     | ready for new job
[2025-05-01 19:17:07] 2025-05-01 17:16:56,087 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-01 19:17:07] 2025-05-01 17:16:56,088 | INFO     | **************************************
[2025-05-01 19:17:07] 2025-05-01 17:16:56,088 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-01 19:17:07] 2025-05-01 17:16:56,088 | INFO     | **************************************
[2025-05-01 19:17:07] 2025-05-01 17:16:56,088 | INFO     | 
[2025-05-01 19:17:07] 2025-05-01 17:16:56,090 | INFO     | architecture information:
[2025-05-01 19:17:07] 2025-05-01 17:16:56,091 | INFO     | executing command: cat /etc/os-release
[2025-05-01 19:17:07] 2025-05-01 17:16:56,110 | INFO     | cat /etc/os-release:
[2025-05-01 19:17:07] NAME="CentOS Linux"
[2025-05-01 19:17:07] VERSION="7 (Core)"
[2025-05-01 19:17:07] ID="centos"
[2025-05-01 19:17:07] ID_LIKE="rhel fedora"
[2025-05-01 19:17:07] VERSION_ID="7"
[2025-05-01 19:17:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-01 19:17:07] ANSI_COLOR="0;31"
[2025-05-01 19:17:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-01 19:17:07] HOME_URL="https://www.centos.org/"
[2025-05-01 19:17:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-01 19:17:07] 
[2025-05-01 19:17:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-01 19:17:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-01 19:17:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-01 19:17:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-01 19:17:07] 
[2025-05-01 19:17:07] 2025-05-01 17:16:56,111 | INFO     | **************************************
[2025-05-01 19:17:07] 2025-05-01 17:16:56,460 | INFO     | PID=1245457 has CPU usage=10.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-05-01 19:17:07] 2025-05-01 17:16:56,614 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-05-01 19:17:07] 2025-05-01 17:16:56,635 | INFO     | sufficient remaining disk space (472889950208 B)
[2025-05-01 19:17:07] 2025-05-01 17:16:56,636 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-01 19:17:07] 2025-05-01 17:16:56,636 | INFO     | current server update state: UPDATING_FINAL
[2025-05-01 19:17:07] 2025-05-01 17:16:56,636 | INFO     | update_server=False
[2025-05-01 19:17:07] 2025-05-01 17:16:56,636 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-01 19:17:07] 2025-05-01 17:16:56,636 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-01 19:17:07] 2025-05-01 17:16:56,637 | INFO     | found 0 job(s) in 20 queues
[2025-05-01 19:17:07] 2025-05-01 17:16:56,637 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-01 19:17:07] 2025-05-01 17:16:56,637 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-01 19:17:07] 2025-05-01 17:16:57,099 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-01 19:17:07] 2025-05-01 17:16:57,100 | INFO     | aborting loop
[2025-05-01 19:17:07] 2025-05-01 17:16:57,321 | INFO     | all data control threads have been joined
[2025-05-01 19:17:07] 2025-05-01 17:16:57,415 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-01 19:17:07] 2025-05-01 17:16:57,463 | INFO     | all payload control threads have been joined
[2025-05-01 19:17:07] 2025-05-01 17:16:57,642 | INFO     | [job] retrieve thread has finished
[2025-05-01 19:17:07] 2025-05-01 17:16:57,669 | INFO     | [job] create_data_payload thread has finished
[2025-05-01 19:17:07] 2025-05-01 17:16:57,817 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-01 19:17:07] 2025-05-01 17:16:57,876 | INFO     | [data] copytool_in thread has finished
[2025-05-01 19:17:07] 2025-05-01 17:16:57,974 | INFO     | [payload] validate_pre thread has finished
[2025-05-01 19:17:07] 2025-05-01 17:16:58,105 | INFO     | [job] job monitor thread has finished
[2025-05-01 19:17:07] 2025-05-01 17:16:58,125 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-01 19:17:07] 2025-05-01 17:16:58,125 | INFO     | all job control threads have been joined
[2025-05-01 19:17:07] 2025-05-01 17:16:58,269 | INFO     | [payload] validate_post thread has finished
[2025-05-01 19:17:07] 2025-05-01 17:16:58,327 | INFO     | [data] control thread has finished
[2025-05-01 19:17:07] 2025-05-01 17:16:58,469 | INFO     | [payload] control thread has finished
[2025-05-01 19:17:07] 2025-05-01 17:16:58,692 | INFO     | [payload] execute_payloads thread has finished
[2025-05-01 19:17:07] 2025-05-01 17:16:58,867 | INFO     | [job] validate thread has finished
[2025-05-01 19:17:07] 2025-05-01 17:16:59,131 | INFO     | [job] control thread has finished
[2025-05-01 19:17:07] 2025-05-01 17:16:59,165 | INFO     | [payload] failed_post thread has finished
[2025-05-01 19:17:07] 2025-05-01 17:16:59,414 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-01 19:17:07] 2025-05-01 17:16:59,421 | INFO     | [data] copytool_out thread has finished
[2025-05-01 19:17:07] 2025-05-01 17:17:00,419 | INFO     | [job] queue monitor thread has finished
[2025-05-01 19:17:07] 2025-05-01 17:17:01,823 | INFO     | [data] queue_monitor thread has finished
[2025-05-01 19:17:07] 2025-05-01 17:17:01,997 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139831169423168)>', '<ExcThread(monitor, started 139830663026432)>']
[2025-05-01 19:17:07] 2025-05-01 17:17:02,668 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-01 19:17:07] 2025-05-01 17:17:02,668 | INFO     | [monitor] control thread has ended
[2025-05-01 19:17:07] 2025-05-01 17:17:07,023 | INFO     | all workflow threads have been joined
[2025-05-01 19:17:07] 2025-05-01 17:17:07,023 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-01 19:17:07] 2025-05-01 17:17:07,024 | INFO     | traces error code: 0
[2025-05-01 19:17:07] 2025-05-01 17:17:07,024 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-01 19:17:07] 2025-05-01 17:17:07,143 [wrapper] ==== pilot stdout END ====
[2025-05-01 19:17:07] 2025-05-01 17:17:07,151 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-01 19:17:07] 2025-05-01 17:17:07,158 [wrapper] pilotpid: 1245457
[2025-05-01 19:17:07] 2025-05-01 17:17:07,165 [wrapper] Pilot exit status: 0
[2025-05-01 19:17:07] 2025-05-01 17:17:07,187 [wrapper] pandaids: 6622355864
[2025-05-01 19:17:07] 2025-05-01 17:17:07,235 [wrapper] cleanup supervisor_pilot 1261790 1245458
[2025-05-01 19:17:07] 2025-05-01 17:17:07,242 [wrapper] Test setup, not cleaning
[2025-05-01 19:17:07] 2025-05-01 17:17:07,249 [wrapper] apfmon messages muted
[2025-05-01 19:17:07] 2025-05-01 17:17:07,255 [wrapper] ==== wrapper stdout END ====
[2025-05-01 19:17:07] 2025-05-01 17:17:07,261 [wrapper] ==== wrapper stderr END ====
[2025-05-01 19:17:07]  *** Error codes and diagnostics ***
[2025-05-01 19:17:07]     "exeErrorCode": 0,
[2025-05-01 19:17:07]     "exeErrorDiag": "",
[2025-05-01 19:17:07]     "pilotErrorCode": 0,
[2025-05-01 19:17:07]     "pilotErrorDiag": "",
[2025-05-01 19:17:07]  *** Listing of results directory ***
[2025-05-01 19:17:07] total 231500
[2025-05-01 19:17:07] -rw-r--r-- 1 boinc boinc    495897 Apr 30 19:42 pilot3.tar.gz
[2025-05-01 19:17:07] -rw-r--r-- 1 boinc boinc      5111 Apr 30 19:54 queuedata.json
[2025-05-01 19:17:07] -rwx------ 1 boinc boinc     37140 Apr 30 19:55 runpilot2-wrapper.sh
[2025-05-01 19:17:07] -rw-r--r-- 1 boinc boinc       100 May  1 18:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-01 19:17:07] -rwxr-xr-x 1 boinc boinc      7986 May  1 18:26 run_atlas
[2025-05-01 19:17:07] -rw-r--r-- 1 boinc boinc       105 May  1 18:26 job.xml
[2025-05-01 19:17:07] -rw-r--r-- 2 boinc boinc  29835961 May  1 18:26 EVNT.44292255._005003.pool.root.1
[2025-05-01 19:17:07] -rw-r--r-- 1 boinc boinc      6818 May  1 18:26 init_data.xml
[2025-05-01 19:17:07] drwxrwx--x 2 boinc boinc      4096 May  1 18:26 shared
[2025-05-01 19:17:07] -rw-r--r-- 2 boinc boinc    508885 May  1 18:26 input.tar.gz
[2025-05-01 19:17:07] -rw-r--r-- 2 boinc boinc     17569 May  1 18:26 start_atlas.sh
[2025-05-01 19:17:07] -rw-r--r-- 1 boinc boinc         0 May  1 18:26 boinc_lockfile
[2025-05-01 19:17:07] -rw-r--r-- 1 boinc boinc      2547 May  1 18:26 pandaJob.out
[2025-05-01 19:17:07] -rw------- 1 boinc boinc       424 May  1 18:26 setup.sh.local
[2025-05-01 19:17:07] -rw------- 1 boinc boinc    995314 May  1 18:26 agis_schedconf.cvmfs.json
[2025-05-01 19:17:07] -rw------- 1 boinc boinc   1596659 May  1 18:26 agis_ddmendpoints.agis.ALL.json
[2025-05-01 19:17:07] drwx------ 4 boinc boinc      4096 May  1 18:26 pilot3
[2025-05-01 19:17:07] -rw------- 1 boinc boinc        95 May  1 19:16 pilot_heartbeat.json
[2025-05-01 19:17:07] -rw------- 1 boinc boinc 202087271 May  1 19:16 HITS.44292257._048954.pool.root.1
[2025-05-01 19:17:07] -rw-r--r-- 1 boinc boinc       529 May  1 19:16 boinc_task_state.xml
[2025-05-01 19:17:07] -rw-r--r-- 1 boinc boinc      8192 May  1 19:16 boinc_mmap_file
[2025-05-01 19:17:07] -rw------- 1 boinc boinc      1022 May  1 19:16 memory_monitor_summary.json
[2025-05-01 19:17:07] -rw-r--r-- 1 boinc boinc        27 May  1 19:16 wrapper_checkpoint.txt
[2025-05-01 19:17:07] -rw------- 1 boinc boinc    331774 May  1 19:16 log.44292257._048954.job.log.tgz.1
[2025-05-01 19:17:07] -rw------- 1 boinc boinc      7665 May  1 19:16 heartbeat.json
[2025-05-01 19:17:07] -rw------- 1 boinc boinc      4800 May  1 19:17 pilotlog.txt
[2025-05-01 19:17:07] -rw------- 1 boinc boinc    311670 May  1 19:17 log.44292257._048954.job.log.1
[2025-05-01 19:17:07] -rw------- 1 boinc boinc       357 May  1 19:17 output.list
[2025-05-01 19:17:07] -rw-r--r-- 1 boinc boinc       620 May  1 19:17 runtime_log
[2025-05-01 19:17:07] -rw------- 1 boinc boinc    665600 May  1 19:17 result.tar.gz
[2025-05-01 19:17:07] -rw------- 1 boinc boinc       662 May  1 19:17 tk8LDmypQU7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmUuELDmsLHYOo.diag
[2025-05-01 19:17:07] -rw-r--r-- 1 boinc boinc     11111 May  1 19:17 runtime_log.err
[2025-05-01 19:17:07] -rw-r--r-- 1 boinc boinc     21611 May  1 19:17 stderr.txt
[2025-05-01 19:17:07] HITS file was successfully produced:
[2025-05-01 19:17:07] -rw------- 1 boinc boinc 202087271 May  1 19:16 shared/HITS.pool.root.1
[2025-05-01 19:17:07]  *** Contents of shared directory: ***
[2025-05-01 19:17:07] total 227668
[2025-05-01 19:17:07] -rw-r--r-- 2 boinc boinc  29835961 May  1 18:26 ATLAS.root_0
[2025-05-01 19:17:07] -rw-r--r-- 2 boinc boinc    508885 May  1 18:26 input.tar.gz
[2025-05-01 19:17:07] -rw-r--r-- 2 boinc boinc     17569 May  1 18:26 start_atlas.sh
[2025-05-01 19:17:07] -rw------- 1 boinc boinc 202087271 May  1 19:16 HITS.pool.root.1
[2025-05-01 19:17:07] -rw------- 1 boinc boinc    665600 May  1 19:17 result.tar.gz
19:17:08 (1241555): run_atlas exited; CPU time 26320.479739
19:17:08 (1241555): called boinc_finish(0)

</stderr_txt>
]]>

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