Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-30 12:17:21 (24120): Detected: vboxwrapper 26206
2025-04-30 12:17:21 (24120): Detected: BOINC client v8.0.2
2025-04-30 12:17:21 (24120): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-04-30 12:17:21 (24120): Successfully copied 'init_data.xml' to the shared directory.
2025-04-30 12:17:22 (24120): Create VM. (boinc_5af8f381c1ddf7a1, slot#1)
2025-04-30 12:17:22 (24120): Setting Memory Size for VM. (4300MB)
2025-04-30 12:17:23 (24120): Setting CPU Count for VM. (3)
2025-04-30 12:17:23 (24120): Setting Chipset Options for VM.
2025-04-30 12:17:23 (24120): Setting Graphics Controller Options for VM.
2025-04-30 12:17:24 (24120): Setting Boot Options for VM.
2025-04-30 12:17:24 (24120): Setting Network Configuration for NAT.
2025-04-30 12:17:24 (24120): Enabling VM Network Access.
2025-04-30 12:17:24 (24120): Disabling USB Support for VM.
2025-04-30 12:17:25 (24120): Disabling COM Port Support for VM.
2025-04-30 12:17:25 (24120): Disabling LPT Port Support for VM.
2025-04-30 12:17:25 (24120): Disabling Audio Support for VM.
2025-04-30 12:17:25 (24120): Disabling Clipboard Support for VM.
2025-04-30 12:17:26 (24120): Disabling Drag and Drop Support for VM.
2025-04-30 12:17:26 (24120): Adding storage controller(s) to VM.
2025-04-30 12:17:26 (24120): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-30 12:17:29 (24120): Adding VirtualBox Guest Additions to VM.
2025-04-30 12:17:29 (24120): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-30 12:17:30 (24120): forwarding host port 58409 to guest port 80
2025-04-30 12:17:30 (24120): Enabling remote desktop for VM.
2025-04-30 12:17:30 (24120): Required extension pack not installed, remote desktop not enabled.
2025-04-30 12:17:30 (24120): Enabling shared directory for VM.
2025-04-30 12:17:31 (24120): Starting VM using VBoxManage interface. (boinc_5af8f381c1ddf7a1, slot#1)
2025-04-30 12:17:35 (24120): Successfully started VM. (PID = '10072')
2025-04-30 12:17:35 (24120): Reporting VM Process ID to BOINC.
2025-04-30 12:17:35 (24120): Guest Log: BIOS: VirtualBox 7.0.22
2025-04-30 12:17:35 (24120): Guest Log: CPUID EDX: 0x178bfbff
2025-04-30 12:17:35 (24120): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-30 12:17:35 (24120): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-30 12:17:35 (24120): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-30 12:17:35 (24120): Detected: Web Application Enabled (http://localhost:58409)
2025-04-30 12:17:35 (24120): Preference change detected
2025-04-30 12:17:35 (24120): Setting CPU throttle for VM. (70%)
2025-04-30 12:17:35 (24120): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-30 12:17:37 (24120): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-30 12:17:37 (24120): Guest Log: BIOS: Booting from Hard Disk...
2025-04-30 12:17:40 (24120): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-30 12:17:40 (24120): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-30 12:17:40 (24120): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-30 12:17:46 (24120): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-30 12:17:46 (24120): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-30 12:17:52 (24120): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-30 12:17:52 (24120): Guest Log: 00:00:00.000117 main     Log opened 2025-04-30T12:17:51.009548000Z
2025-04-30 12:17:52 (24120): Guest Log: 00:00:00.000191 main     OS Product: Linux
2025-04-30 12:17:52 (24120): Guest Log: 00:00:00.000209 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-30 12:17:52 (24120): Guest Log: 00:00:00.000224 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-30 12:17:52 (24120): Guest Log: 00:00:00.000245 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-30 12:17:52 (24120): Guest Log: 00:00:00.000245 main     Process ID: 1283
2025-04-30 12:17:52 (24120): Guest Log: 00:00:00.000245 main     Package type: LINUX_64BITS_GENERIC
2025-04-30 12:17:52 (24120): Guest Log: 00:00:00.000794 main     5.2.32 r132073 started. Verbose level = 0
2025-04-30 12:17:52 (24120): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-30 12:17:52 (24120): Guest Log: [INFO] Mounting shared directory
2025-04-30 12:17:52 (24120): Guest Log: [INFO] Checking for init_data.xml
2025-04-30 12:18:02 (24120): Guest Log: 00:00:10.012531 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 988 503 000ns (GuestNow=1 746 008 282 023 211 000 ns GuestLast=1 746 015 471 011 714 000 ns fSetTimeLastLoop=true )
2025-04-30 12:20:19 (24120): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-30 12:20:19 (24120): Guest Log: [INFO] Detected branch: prod
2025-04-30 12:20:19 (24120): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-30 12:20:19 (24120): Guest Log: Copying input files
2025-04-30 12:20:20 (24120): Guest Log: Copied input files into RunAtlas.
2025-04-30 12:20:20 (24120): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-30 12:20:20 (24120): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-30 12:20:20 (24120): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-30 12:20:20 (24120): Guest Log: Further information can be found at the LHC@home message board.
2025-04-30 12:22:19 (24120): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-30 12:22:20 (24120): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-30 12:22:20 (24120): Guest Log: 2.6.3.0 1610 3 32132 145449 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-30 12:22:20 (24120): Guest Log: copied the webapp to /var/www
2025-04-30 12:22:20 (24120): Guest Log: ATHENA_PROC_NUMBER=3
2025-04-30 12:22:20 (24120): Guest Log: ATHENA_CORE_NUMBER=3
2025-04-30 12:22:20 (24120): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-30 12:22:20 (24120): Guest Log:  *** Starting ATLAS job. (PandaID=6621613232 taskID=44270688) ***
2025-04-30 12:29:56 (24120): Guest Log:  *** Job finished ***
2025-04-30 12:29:56 (24120): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:47,026 | INFO     | [job] create_data_payload thread has finished
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:47,135 | INFO     | [payload] validate_post thread has finished
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:49,892 | INFO     | [data] queue_monitor thread has finished
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:50,148 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139835761375040)>', '<ExcThread(monitor, started 139835301930752)>']
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:50,629 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:50,629 | INFO     | [monitor] control thread has ended
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:55,154 | INFO     | all workflow threads have been joined
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:55,154 | INFO     | end of generic workflow (traces error code: 0)
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:55,155 | INFO     | traces error code: 0
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:55,155 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:55,307 [wrapper] ==== pilot stdout END ====
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:55,311 [wrapper] ==== wrapper stdout RESUME ====
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:55,314 [wrapper] pilotpid: 5974
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:55,317 [wrapper] Pilot exit status: 0
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:55,373 [wrapper] pandaids: 6621613232
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:55,393 [wrapper] cleanup supervisor_pilot  5980 5975
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:55,399 [wrapper] Test setup, not cleaning
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:55,402 [wrapper] apfmon messages muted
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:55,405 [wrapper] ==== wrapper stdout END ====
2025-04-30 12:29:56 (24120): Guest Log: 2025-04-30 10:29:55,408 [wrapper] ==== wrapper stderr END ====
2025-04-30 12:29:56 (24120): Guest Log:  *** Error codes and diagnostics ***
2025-04-30 12:29:56 (24120): Guest Log:     "exeErrorCode": 65,
2025-04-30 12:29:56 (24120): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-04-30 12:29:56 (24120): Guest Log:     "pilotErrorCode": 1305,
2025-04-30 12:29:56 (24120): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-04-30 12:29:56 (24120): Guest Log:  *** Listing of results directory ***
2025-04-30 12:29:56 (24120): Guest Log: total 3888
2025-04-30 12:29:56 (24120): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 30 02:27 pilot3.tar.gz
2025-04-30 12:29:56 (24120): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 30 02:56 runpilot2-wrapper.sh
2025-04-30 12:29:56 (24120): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 30 02:56 queuedata.json
2025-04-30 12:29:56 (24120): Guest Log: -rwxr-xr-x. 1 atlas atlas    8914 Apr 30 10:20 init_data.xml
2025-04-30 12:29:56 (24120): Guest Log: -rwxr-xr-x. 1 atlas atlas  508848 Apr 30 10:20 input.tar.gz
2025-04-30 12:29:56 (24120): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 30 10:20 start_atlas.sh
2025-04-30 12:29:56 (24120): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 30 10:20 EVNT.44270686._000225.pool.root.1 -> /data/./ATLAS.root_0
2025-04-30 12:29:56 (24120): Guest Log: -rw-r--r--. 1 atlas atlas    2468 Apr 30 10:22 pandaJob.out
2025-04-30 12:29:56 (24120): Guest Log: -rw-------. 1 atlas atlas     424 Apr 30 10:22 setup.sh.local
2025-04-30 12:29:56 (24120): Guest Log: -rw-------. 1 atlas atlas  991793 Apr 30 10:25 agis_schedconf.cvmfs.json
2025-04-30 12:29:56 (24120): Guest Log: -rw-------. 1 atlas atlas 1596659 Apr 30 10:25 agis_ddmendpoints.agis.ALL.json
2025-04-30 12:29:56 (24120): Guest Log: drwx------. 4 atlas atlas    4096 Apr 30 10:25 pilot3
2025-04-30 12:29:56 (24120): Guest Log: -rw-------. 1 atlas atlas    1011 Apr 30 10:27 memory_monitor_summary.json
2025-04-30 12:29:56 (24120): Guest Log: -rw-------. 1 atlas atlas   20677 Apr 30 10:27 log.44270688._005611.job.log.tgz.1
2025-04-30 12:29:56 (24120): Guest Log: -rw-------. 1 atlas atlas      95 Apr 30 10:29 pilot_heartbeat.json
2025-04-30 12:29:56 (24120): Guest Log: -rw-------. 1 atlas atlas    8419 Apr 30 10:29 heartbeat.json
2025-04-30 12:29:56 (24120): Guest Log: -rw-------. 1 atlas atlas    4599 Apr 30 10:29 pilotlog.txt
2025-04-30 12:29:56 (24120): Guest Log: -rw-------. 1 atlas atlas   79067 Apr 30 10:29 log.44270688._005611.job.log.1
2025-04-30 12:29:56 (24120): Guest Log: -rw-------. 1 atlas atlas     188 Apr 30 10:29 output.list
2025-04-30 12:29:56 (24120): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 30 10:29 runtime_log
2025-04-30 12:29:56 (24120): Guest Log: -rw-------. 1 atlas atlas  122880 Apr 30 10:29 result.tar.gz
2025-04-30 12:29:56 (24120): Guest Log: -rw-------. 1 atlas atlas     639 Apr 30 10:29 XkhLDmrnCU7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmM1xLDmalNXjm.diag
2025-04-30 12:29:56 (24120): Guest Log: -rw-r--r--. 1 atlas atlas   10782 Apr 30 10:29 runtime_log.err
2025-04-30 12:29:56 (24120): Guest Log: Looking for outputfile HITS.44270688._005611.pool.root.1
2025-04-30 12:29:56 (24120): Guest Log: No HITS file was produced
2025-04-30 12:29:56 (24120): Guest Log: Successfully finished the ATLAS job!
2025-04-30 12:29:56 (24120): Guest Log: Copying the results back to the shared directory!
2025-04-30 12:29:56 (24120): Guest Log:  *** Contents of shared directory: ***
2025-04-30 12:29:56 (24120): Guest Log: total 209584
2025-04-30 12:29:56 (24120): Guest Log: -rwxrwxrwx. 1 root root 213942667 Apr 30 10:17 ATLAS.root_0
2025-04-30 12:29:56 (24120): Guest Log: -rwxrwxrwx. 1 root root      8914 Apr 30 10:17 init_data.xml
2025-04-30 12:29:56 (24120): Guest Log: -rwxrwxrwx. 1 root root    508848 Apr 30 10:17 input.tar.gz
2025-04-30 12:29:56 (24120): Guest Log: -rwxrwxrwx. 1 root root    122880 Apr 30 10:29 result.tar.gz
2025-04-30 12:29:56 (24120): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 30 10:17 start_atlas.sh
2025-04-30 12:29:56 (24120): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-30 12:29:56 (24120): VM Completion File Detected.
2025-04-30 12:29:56 (24120): Powering off VM.
2025-04-30 12:29:57 (24120): Successfully stopped VM.
2025-04-30 12:29:57 (24120): Deregistering VM. (boinc_5af8f381c1ddf7a1, slot#1)
2025-04-30 12:29:57 (24120): Removing network bandwidth throttle group from VM.
2025-04-30 12:29:57 (24120): Removing VM from VirtualBox.
12:30:02 (24120): called boinc_finish(0)

</stderr_txt>
]]>

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