Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-30 11:39:26 (9168): Detected: vboxwrapper 26206
2025-04-30 11:39:26 (9168): Detected: BOINC client v8.0.2
2025-04-30 11:39:26 (9168): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-04-30 11:39:26 (9168): Successfully copied 'init_data.xml' to the shared directory.
2025-04-30 11:39:27 (9168): Create VM. (boinc_99dcd158a30ab792, slot#1)
2025-04-30 11:39:27 (9168): Setting Memory Size for VM. (4300MB)
2025-04-30 11:39:28 (9168): Setting CPU Count for VM. (3)
2025-04-30 11:39:28 (9168): Setting Chipset Options for VM.
2025-04-30 11:39:28 (9168): Setting Graphics Controller Options for VM.
2025-04-30 11:39:28 (9168): Setting Boot Options for VM.
2025-04-30 11:39:29 (9168): Setting Network Configuration for NAT.
2025-04-30 11:39:29 (9168): Enabling VM Network Access.
2025-04-30 11:39:29 (9168): Disabling USB Support for VM.
2025-04-30 11:39:30 (9168): Disabling COM Port Support for VM.
2025-04-30 11:39:30 (9168): Disabling LPT Port Support for VM.
2025-04-30 11:39:30 (9168): Disabling Audio Support for VM.
2025-04-30 11:39:30 (9168): Disabling Clipboard Support for VM.
2025-04-30 11:39:31 (9168): Disabling Drag and Drop Support for VM.
2025-04-30 11:39:31 (9168): Adding storage controller(s) to VM.
2025-04-30 11:39:31 (9168): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-30 11:39:34 (9168): Adding VirtualBox Guest Additions to VM.
2025-04-30 11:39:34 (9168): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-30 11:39:35 (9168): forwarding host port 54136 to guest port 80
2025-04-30 11:39:35 (9168): Enabling remote desktop for VM.
2025-04-30 11:39:35 (9168): Required extension pack not installed, remote desktop not enabled.
2025-04-30 11:39:35 (9168): Enabling shared directory for VM.
2025-04-30 11:39:36 (9168): Starting VM using VBoxManage interface. (boinc_99dcd158a30ab792, slot#1)
2025-04-30 11:39:40 (9168): Successfully started VM. (PID = '17644')
2025-04-30 11:39:40 (9168): Reporting VM Process ID to BOINC.
2025-04-30 11:39:40 (9168): Guest Log: BIOS: VirtualBox 7.0.22
2025-04-30 11:39:40 (9168): Guest Log: CPUID EDX: 0x178bfbff
2025-04-30 11:39:40 (9168): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-30 11:39:40 (9168): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-30 11:39:40 (9168): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-30 11:39:40 (9168): Detected: Web Application Enabled (http://localhost:54136)
2025-04-30 11:39:41 (9168): VM state change detected. (old = 'running', new = 'paused')
2025-04-30 11:39:48 (9168): Preference change detected
2025-04-30 11:39:48 (9168): Setting CPU throttle for VM. (70%)
2025-04-30 11:39:48 (9168): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-30 11:39:49 (9168): VM state change detected. (old = 'paused', new = 'running')
2025-04-30 11:39:50 (9168): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-30 11:39:50 (9168): Guest Log: BIOS: Booting from Hard Disk...
2025-04-30 11:39:53 (9168): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-30 11:39:53 (9168): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-30 11:39:53 (9168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-30 11:39:59 (9168): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-30 11:39:59 (9168): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-30 11:40:04 (9168): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-30 11:40:04 (9168): Guest Log: 00:00:00.000107 main     Log opened 2025-04-30T11:39:55.089467000Z
2025-04-30 11:40:04 (9168): Guest Log: 00:00:00.000184 main     OS Product: Linux
2025-04-30 11:40:04 (9168): Guest Log: 00:00:00.000203 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-30 11:40:04 (9168): Guest Log: 00:00:00.000218 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-30 11:40:04 (9168): Guest Log: 00:00:00.000234 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-30 11:40:04 (9168): Guest Log: 00:00:00.000234 main     Process ID: 1281
2025-04-30 11:40:04 (9168): Guest Log: 00:00:00.000235 main     Package type: LINUX_64BITS_GENERIC
2025-04-30 11:40:04 (9168): Guest Log: 00:00:00.000727 main     5.2.32 r132073 started. Verbose level = 0
2025-04-30 11:40:04 (9168): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-30 11:40:04 (9168): Guest Log: [INFO] Mounting shared directory
2025-04-30 11:40:05 (9168): Guest Log: [INFO] Checking for init_data.xml
2025-04-30 11:40:14 (9168): Guest Log: 00:00:10.002597 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 180 925 213 000ns (GuestNow=1 746 006 014 165 852 000 ns GuestLast=1 746 013 195 091 065 000 ns fSetTimeLastLoop=true )
2025-04-30 11:41:15 (9168): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-30 11:41:15 (9168): Guest Log: [INFO] Detected branch: prod
2025-04-30 11:41:15 (9168): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-30 11:41:15 (9168): Guest Log: Copying input files
2025-04-30 11:41:16 (9168): Guest Log: Copied input files into RunAtlas.
2025-04-30 11:41:16 (9168): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-30 11:41:16 (9168): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-30 11:41:16 (9168): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-30 11:41:16 (9168): Guest Log: Further information can be found at the LHC@home message board.
2025-04-30 11:45:04 (9168): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-30 11:45:04 (9168): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-30 11:45:04 (9168): Guest Log: 2.6.3.0 1591 4 30176 145447 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-30 11:45:04 (9168): Guest Log: copied the webapp to /var/www
2025-04-30 11:45:04 (9168): Guest Log: ATHENA_PROC_NUMBER=3
2025-04-30 11:45:04 (9168): Guest Log: ATHENA_CORE_NUMBER=3
2025-04-30 11:45:04 (9168): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-30 11:45:04 (9168): Guest Log:  *** Starting ATLAS job. (PandaID=6621228048 taskID=44270688) ***
2025-04-30 11:52:17 (9168): Guest Log:  *** Job finished ***
2025-04-30 11:52:17 (9168): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:08,763 | INFO     | [job] control thread has finished
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:08,764 | INFO     | [data] copytool_out thread has finished
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:10,838 | INFO     | [data] queue_monitor thread has finished
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:11,300 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140347121252160)>', '<ExcThread(monitor, started 140346679867136)>']
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:12,204 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:12,204 | INFO     | [monitor] control thread has ended
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:16,306 | INFO     | all workflow threads have been joined
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:16,306 | INFO     | end of generic workflow (traces error code: 0)
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:16,306 | INFO     | traces error code: 0
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:16,306 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:16,419 [wrapper] ==== pilot stdout END ====
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:16,422 [wrapper] ==== wrapper stdout RESUME ====
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:16,425 [wrapper] pilotpid: 5967
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:16,428 [wrapper] Pilot exit status: 0
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:16,477 [wrapper] pandaids: 6621228048
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:16,495 [wrapper] cleanup supervisor_pilot  5973 5968
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:16,498 [wrapper] Test setup, not cleaning
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:16,501 [wrapper] apfmon messages muted
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:16,503 [wrapper] ==== wrapper stdout END ====
2025-04-30 11:52:17 (9168): Guest Log: 2025-04-30 09:52:16,506 [wrapper] ==== wrapper stderr END ====
2025-04-30 11:52:17 (9168): Guest Log:  *** Error codes and diagnostics ***
2025-04-30 11:52:17 (9168): Guest Log:     "exeErrorCode": 65,
2025-04-30 11:52:17 (9168): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-04-30 11:52:17 (9168): Guest Log:     "pilotErrorCode": 1305,
2025-04-30 11:52:17 (9168): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-04-30 11:52:17 (9168): Guest Log:  *** Listing of results directory ***
2025-04-30 11:52:17 (9168): Guest Log: total 3888
2025-04-30 11:52:17 (9168): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 29 12:44 pilot3.tar.gz
2025-04-30 11:52:17 (9168): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 29 12:53 runpilot2-wrapper.sh
2025-04-30 11:52:17 (9168): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 29 12:53 queuedata.json
2025-04-30 11:52:17 (9168): Guest Log: -rwxr-xr-x. 1 atlas atlas    8914 Apr 30 09:41 init_data.xml
2025-04-30 11:52:17 (9168): Guest Log: -rwxr-xr-x. 1 atlas atlas  508855 Apr 30 09:41 input.tar.gz
2025-04-30 11:52:17 (9168): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 30 09:41 start_atlas.sh
2025-04-30 11:52:17 (9168): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 30 09:41 EVNT.44270686._000206.pool.root.1 -> /data/./ATLAS.root_0
2025-04-30 11:52:17 (9168): Guest Log: -rw-r--r--. 1 atlas atlas    2464 Apr 30 09:45 pandaJob.out
2025-04-30 11:52:17 (9168): Guest Log: -rw-------. 1 atlas atlas     424 Apr 30 09:45 setup.sh.local
2025-04-30 11:52:17 (9168): Guest Log: -rw-------. 1 atlas atlas  991801 Apr 30 09:47 agis_schedconf.cvmfs.json
2025-04-30 11:52:17 (9168): Guest Log: -rw-------. 1 atlas atlas 1596659 Apr 30 09:47 agis_ddmendpoints.agis.ALL.json
2025-04-30 11:52:17 (9168): Guest Log: drwx------. 4 atlas atlas    4096 Apr 30 09:47 pilot3
2025-04-30 11:52:17 (9168): Guest Log: -rw-------. 1 atlas atlas    1011 Apr 30 09:49 memory_monitor_summary.json
2025-04-30 11:52:17 (9168): Guest Log: -rw-------. 1 atlas atlas   20631 Apr 30 09:50 log.44270688._005126.job.log.tgz.1
2025-04-30 11:52:17 (9168): Guest Log: -rw-------. 1 atlas atlas      95 Apr 30 09:51 pilot_heartbeat.json
2025-04-30 11:52:17 (9168): Guest Log: -rw-------. 1 atlas atlas    8415 Apr 30 09:52 heartbeat.json
2025-04-30 11:52:17 (9168): Guest Log: -rw-------. 1 atlas atlas    4722 Apr 30 09:52 pilotlog.txt
2025-04-30 11:52:17 (9168): Guest Log: -rw-------. 1 atlas atlas   78960 Apr 30 09:52 log.44270688._005126.job.log.1
2025-04-30 11:52:17 (9168): Guest Log: -rw-------. 1 atlas atlas     188 Apr 30 09:52 output.list
2025-04-30 11:52:17 (9168): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 30 09:52 runtime_log
2025-04-30 11:52:17 (9168): Guest Log: -rw-------. 1 atlas atlas  122880 Apr 30 09:52 result.tar.gz
2025-04-30 11:52:17 (9168): Guest Log: -rw-r--r--. 1 atlas atlas   10782 Apr 30 09:52 runtime_log.err
2025-04-30 11:52:17 (9168): Guest Log: -rw-------. 1 atlas atlas     639 Apr 30 09:52 CCcMDmedzT7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmshDLDmU3z9Em.diag
2025-04-30 11:52:17 (9168): Guest Log: Looking for outputfile HITS.44270688._005126.pool.root.1
2025-04-30 11:52:17 (9168): Guest Log: No HITS file was produced
2025-04-30 11:52:17 (9168): Guest Log: Successfully finished the ATLAS job!
2025-04-30 11:52:17 (9168): Guest Log: Copying the results back to the shared directory!
2025-04-30 11:52:17 (9168): Guest Log:  *** Contents of shared directory: ***
2025-04-30 11:52:17 (9168): Guest Log: total 210684
2025-04-30 11:52:17 (9168): Guest Log: -rwxrwxrwx. 1 root root 215071275 Apr 30 09:39 ATLAS.root_0
2025-04-30 11:52:17 (9168): Guest Log: -rwxrwxrwx. 1 root root      8914 Apr 30 09:39 init_data.xml
2025-04-30 11:52:17 (9168): Guest Log: -rwxrwxrwx. 1 root root    508855 Apr 30 08:45 input.tar.gz
2025-04-30 11:52:17 (9168): Guest Log: -rwxrwxrwx. 1 root root    122880 Apr 30 09:52 result.tar.gz
2025-04-30 11:52:17 (9168): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 30 08:45 start_atlas.sh
2025-04-30 11:52:17 (9168): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-30 11:52:17 (9168): VM Completion File Detected.
2025-04-30 11:52:17 (9168): Powering off VM.
2025-04-30 11:52:18 (9168): Successfully stopped VM.
2025-04-30 11:52:18 (9168): Deregistering VM. (boinc_99dcd158a30ab792, slot#1)
2025-04-30 11:52:18 (9168): Removing network bandwidth throttle group from VM.
2025-04-30 11:52:18 (9168): Removing VM from VirtualBox.
11:52:23 (9168): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN