Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
03:00:35 (1058875): wrapper (7.7.26015): starting
03:00:35 (1058875): wrapper: running run_atlas (--nthreads 12)
[2025-04-30 03:00:35] Arguments: --nthreads 12
[2025-04-30 03:00:35] Threads: 12
[2025-04-30 03:00:35] Checking for CVMFS
[2025-04-30 03:00:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-30 03:00:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-30 03:00:36] Running cvmfs_config stat atlas.cern.ch
[2025-04-30 03:00:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-30 03:00:36] 2.11.5.0 3741 2243 178276 145434 2 187 2495694 4194305 12074 130560 0 22977692 99.979 1777566 612 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-04-30 03:00:36] CVMFS is ok
[2025-04-30 03:00:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-30 03:00:36] Checking for apptainer binary...
[2025-04-30 03:00:36] apptainer is not installed, using version from CVMFS
[2025-04-30 03:00:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-30 03:00:36] mikemint-desktop
[2025-04-30 03:00:36] apptainer works
[2025-04-30 03:00:36] Set ATHENA_PROC_NUMBER=12
[2025-04-30 03:00:36] Set ATHENA_CORE_NUMBER=12
[2025-04-30 03:00:36] Starting ATLAS job with PandaID=6623658516
[2025-04-30 03:00:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-30 04:18:45]  *** The last 200 lines of the pilot log: ***
[2025-04-30 04:18:45] 2025-04-30 02:17:44,308 | INFO     | monitor loop #310: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:17:44,308 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:17:46,818 | INFO     | monitor loop #311: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:17:46,818 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:17:49,324 | INFO     | monitor loop #312: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:17:49,324 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:17:51,835 | INFO     | monitor loop #313: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:17:51,836 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:17:54,346 | INFO     | monitor loop #314: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:17:54,347 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:17:56,856 | INFO     | monitor loop #315: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:17:56,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:17:59,368 | INFO     | monitor loop #316: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:17:59,368 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:18:01,878 | INFO     | monitor loop #317: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:18:01,879 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:18:04,386 | INFO     | monitor loop #318: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:18:04,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:18:05,387 | INFO     | PID=1063065 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-30 04:18:45] 2025-04-30 02:18:05,387 | INFO     | .. there are 16 such processes running
[2025-04-30 04:18:45] 2025-04-30 02:18:06,892 | INFO     | monitor loop #319: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:18:06,892 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:18:09,396 | INFO     | monitor loop #320: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:18:09,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:18:11,908 | INFO     | monitor loop #321: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:18:11,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:18:14,420 | INFO     | monitor loop #322: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:18:14,420 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:18:16,932 | INFO     | monitor loop #323: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:18:16,932 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:18:19,442 | INFO     | monitor loop #324: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:18:19,443 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:18:21,950 | INFO     | monitor loop #325: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:18:21,951 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:18:24,460 | INFO     | monitor loop #326: job 0:6623658516 is in state 'finished'
[2025-04-30 04:18:45] 2025-04-30 02:18:24,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-30 04:18:45] 2025-04-30 02:18:25,356 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-30 04:18:45] 2025-04-30 02:18:25,356 | INFO     | using path: /var/lib/boinc-client/slots/9/PanDA_Pilot-6623658516/memory_monitor_summary.json (trf name=prmon)
[2025-04-30 04:18:45] 2025-04-30 02:18:25,357 | INFO     | extracted standard info from prmon json
[2025-04-30 04:18:45] 2025-04-30 02:18:25,357 | INFO     | extracted standard memory fields from prmon json
[2025-04-30 04:18:45] 2025-04-30 02:18:25,357 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-30 04:18:45] 2025-04-30 02:18:25,358 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-30 04:18:45] 2025-04-30 02:18:25,358 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-30 04:18:45] 2025-04-30 02:18:25,359 | INFO     | fitting pss+swap vs Time
[2025-04-30 04:18:45] 2025-04-30 02:18:25,364 | INFO     | sum of square deviations: 97479037.0
[2025-04-30 04:18:45] 2025-04-30 02:18:25,364 | INFO     | sum of deviations: 6065420655.5
[2025-04-30 04:18:45] 2025-04-30 02:18:25,365 | INFO     | mean x: 1745977237.5
[2025-04-30 04:18:45] 2025-04-30 02:18:25,365 | INFO     | mean y: 2707269.25
[2025-04-30 04:18:45] 2025-04-30 02:18:25,365 | INFO     | -- intersect: -108636921581.05685
[2025-04-30 04:18:45] 2025-04-30 02:18:25,365 | INFO     | intersect: -108636921581.05685
[2025-04-30 04:18:45] 2025-04-30 02:18:25,365 | INFO     | chi2: 0.16155067447588534
[2025-04-30 04:18:45] 2025-04-30 02:18:25,365 | INFO     | -- intersect: -108636921581.05685
[2025-04-30 04:18:45] 2025-04-30 02:18:25,365 | INFO     | current memory leak: 62.22 B/s (using 68 data points, chi2=0.16)
[2025-04-30 04:18:45] 2025-04-30 02:18:25,366 | INFO     | ..............................
[2025-04-30 04:18:45] 2025-04-30 02:18:25,366 | INFO     | . Timing measurements:
[2025-04-30 04:18:45] 2025-04-30 02:18:25,366 | INFO     | . get job = 0 s
[2025-04-30 04:18:45] 2025-04-30 02:18:25,366 | INFO     | . initial setup = 2 s
[2025-04-30 04:18:45] 2025-04-30 02:18:25,366 | INFO     | . payload setup = 9 s
[2025-04-30 04:18:45] 2025-04-30 02:18:25,367 | INFO     | . stage-in = 0 s
[2025-04-30 04:18:45] 2025-04-30 02:18:25,367 | INFO     | . payload execution = 4561 s
[2025-04-30 04:18:45] 2025-04-30 02:18:25,367 | INFO     | . stage-out = 2 s
[2025-04-30 04:18:45] 2025-04-30 02:18:25,367 | INFO     | . log creation = 0 s
[2025-04-30 04:18:45] 2025-04-30 02:18:25,367 | INFO     | ..............................
[2025-04-30 04:18:45] 2025-04-30 02:18:25,696 | INFO     | 
[2025-04-30 04:18:45] 2025-04-30 02:18:25,696 | INFO     | job summary report
[2025-04-30 04:18:45] 2025-04-30 02:18:25,696 | INFO     | --------------------------------------------------
[2025-04-30 04:18:45] 2025-04-30 02:18:25,696 | INFO     | PanDA job id: 6623658516
[2025-04-30 04:18:45] 2025-04-30 02:18:25,696 | INFO     | task id: 44456341
[2025-04-30 04:18:45] 2025-04-30 02:18:25,696 | INFO     | errors: (none)
[2025-04-30 04:18:45] 2025-04-30 02:18:25,696 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-30 04:18:45] 2025-04-30 02:18:25,697 | INFO     | pilot state: finished 
[2025-04-30 04:18:45] 2025-04-30 02:18:25,697 | INFO     | transexitcode: 0
[2025-04-30 04:18:45] 2025-04-30 02:18:25,697 | INFO     | exeerrorcode: 0
[2025-04-30 04:18:45] 2025-04-30 02:18:25,697 | INFO     | exeerrordiag: 
[2025-04-30 04:18:45] 2025-04-30 02:18:25,697 | INFO     | exitcode: 0
[2025-04-30 04:18:45] 2025-04-30 02:18:25,697 | INFO     | exitmsg: OK
[2025-04-30 04:18:45] 2025-04-30 02:18:25,697 | INFO     | cpuconsumptiontime: 35317 s
[2025-04-30 04:18:45] 2025-04-30 02:18:25,697 | INFO     | nevents: 400
[2025-04-30 04:18:45] 2025-04-30 02:18:25,697 | INFO     | neventsw: 0
[2025-04-30 04:18:45] 2025-04-30 02:18:25,697 | INFO     | pid: 1072718
[2025-04-30 04:18:45] 2025-04-30 02:18:25,698 | INFO     | pgrp: 1072718
[2025-04-30 04:18:45] 2025-04-30 02:18:25,698 | INFO     | corecount: 12
[2025-04-30 04:18:45] 2025-04-30 02:18:25,698 | INFO     | event service: False
[2025-04-30 04:18:45] 2025-04-30 02:18:25,698 | INFO     | sizes: {0: 2393773, 7: 2393979, 11: 2394007, 4575: 2420060, 4579: 2429015, 4583: 2429071, 4635: 2429369}
[2025-04-30 04:18:45] 2025-04-30 02:18:25,698 | INFO     | --------------------------------------------------
[2025-04-30 04:18:45] 2025-04-30 02:18:25,698 | INFO     | 
[2025-04-30 04:18:45] 2025-04-30 02:18:25,698 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/9
[2025-04-30 04:18:45] 2025-04-30 02:18:25,985 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,985 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,985 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,986 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,986 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,986 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,986 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,986 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,986 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,986 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,986 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,986 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,986 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,987 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,987 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,987 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,987 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,987 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-30 04:18:45] 2025-04-30 02:18:25,987 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,987 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-30 04:18:45] 2025-04-30 02:18:25,987 | INFO     | job 6623658516 has completed (purged errors)
[2025-04-30 04:18:45] 2025-04-30 02:18:25,992 | INFO     | overall cleanup function is called
[2025-04-30 04:18:45] 2025-04-30 02:18:27,012 | INFO     | --- collectZombieJob: --- 10, [1072718]
[2025-04-30 04:18:45] 2025-04-30 02:18:27,012 | INFO     | zombie collector waiting for pid 1072718
[2025-04-30 04:18:45] 2025-04-30 02:18:27,012 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-30 04:18:45] 2025-04-30 02:18:27,012 | INFO     | collected zombie processes
[2025-04-30 04:18:45] 2025-04-30 02:18:27,012 | INFO     | will attempt to kill all subprocesses of pid=1072718
[2025-04-30 04:18:45] 2025-04-30 02:18:28,508 | INFO     | process IDs to be killed: [1072718] (in reverse order)
[2025-04-30 04:18:45] 2025-04-30 02:18:29,141 | INFO     | PID=1063065 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-30 04:18:45] 2025-04-30 02:18:29,141 | INFO     | .. there are 16 such processes running
[2025-04-30 04:18:45] 2025-04-30 02:18:30,671 | WARNING  | found no corresponding commands to process id(s)
[2025-04-30 04:18:45] 2025-04-30 02:18:30,671 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-30 04:18:45] 2025-04-30 02:18:30,709 | INFO     | did not find any defunct processes belonging to 1072718
[2025-04-30 04:18:45] 2025-04-30 02:18:30,743 | INFO     | did not find any defunct processes belonging to 1072718
[2025-04-30 04:18:45] 2025-04-30 02:18:30,748 | INFO     | ready for new job
[2025-04-30 04:18:45] 2025-04-30 02:18:30,748 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-30 04:18:45] 2025-04-30 02:18:30,750 | INFO     | **************************************
[2025-04-30 04:18:45] 2025-04-30 02:18:30,750 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-30 04:18:45] 2025-04-30 02:18:30,750 | INFO     | **************************************
[2025-04-30 04:18:45] 2025-04-30 02:18:30,750 | INFO     | 
[2025-04-30 04:18:45] 2025-04-30 02:18:30,774 | INFO     | architecture information:
[2025-04-30 04:18:45] 2025-04-30 02:18:30,780 | INFO     | executing command: cat /etc/os-release
[2025-04-30 04:18:45] 2025-04-30 02:18:30,932 | INFO     | cat /etc/os-release:
[2025-04-30 04:18:45] NAME="CentOS Linux"
[2025-04-30 04:18:45] VERSION="7 (Core)"
[2025-04-30 04:18:45] ID="centos"
[2025-04-30 04:18:45] ID_LIKE="rhel fedora"
[2025-04-30 04:18:45] VERSION_ID="7"
[2025-04-30 04:18:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-30 04:18:45] ANSI_COLOR="0;31"
[2025-04-30 04:18:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-30 04:18:45] HOME_URL="https://www.centos.org/"
[2025-04-30 04:18:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-30 04:18:45] 
[2025-04-30 04:18:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-30 04:18:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-30 04:18:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-30 04:18:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-30 04:18:45] 
[2025-04-30 04:18:45] 2025-04-30 02:18:30,932 | INFO     | **************************************
[2025-04-30 04:18:45] 2025-04-30 02:18:31,436 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/9
[2025-04-30 04:18:45] 2025-04-30 02:18:31,572 | INFO     | sufficient remaining disk space (185569640448 B)
[2025-04-30 04:18:45] 2025-04-30 02:18:31,572 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-30 04:18:45] 2025-04-30 02:18:31,573 | INFO     | current server update state: UPDATING_FINAL
[2025-04-30 04:18:45] 2025-04-30 02:18:31,573 | INFO     | update_server=False
[2025-04-30 04:18:45] 2025-04-30 02:18:31,573 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-30 04:18:45] 2025-04-30 02:18:31,573 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-30 04:18:45] 2025-04-30 02:18:31,573 | INFO     | found 0 job(s) in 20 queues
[2025-04-30 04:18:45] 2025-04-30 02:18:31,573 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-30 04:18:45] 2025-04-30 02:18:31,573 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-30 04:18:45] 2025-04-30 02:18:31,576 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-30 04:18:45] 2025-04-30 02:18:32,004 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-30 04:18:45] 2025-04-30 02:18:32,004 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-30 04:18:45] 2025-04-30 02:18:32,004 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-30 04:18:45] 2025-04-30 02:18:32,004 | INFO     | will abort loop
[2025-04-30 04:18:45] 2025-04-30 02:18:32,156 | INFO     | all payload control threads have been joined
[2025-04-30 04:18:45] 2025-04-30 02:18:32,220 | INFO     | all data control threads have been joined
[2025-04-30 04:18:45] 2025-04-30 02:18:32,536 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-30 04:18:45] 2025-04-30 02:18:32,576 | INFO     | [job] retrieve thread has finished
[2025-04-30 04:18:45] 2025-04-30 02:18:32,584 | INFO     | [job] queue monitor thread has finished
[2025-04-30 04:18:45] 2025-04-30 02:18:32,592 | INFO     | [payload] failed_post thread has finished
[2025-04-30 04:18:45] 2025-04-30 02:18:32,768 | INFO     | all job control threads have been joined
[2025-04-30 04:18:45] 2025-04-30 02:18:32,848 | INFO     | [job] validate thread has finished
[2025-04-30 04:18:45] 2025-04-30 02:18:32,908 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-30 04:18:45] 2025-04-30 02:18:33,008 | INFO     | [job] job monitor thread has finished
[2025-04-30 04:18:45] 2025-04-30 02:18:33,048 | INFO     | [data] copytool_in thread has finished
[2025-04-30 04:18:45] 2025-04-30 02:18:33,116 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-30 04:18:45] 2025-04-30 02:18:33,144 | INFO     | [payload] validate_pre thread has finished
[2025-04-30 04:18:45] 2025-04-30 02:18:33,164 | INFO     | [payload] control thread has finished
[2025-04-30 04:18:45] 2025-04-30 02:18:33,168 | INFO     | [job] create_data_payload thread has finished
[2025-04-30 04:18:45] 2025-04-30 02:18:33,224 | INFO     | [data] control thread has finished
[2025-04-30 04:18:45] 2025-04-30 02:18:33,672 | INFO     | [payload] execute_payloads thread has finished
[2025-04-30 04:18:45] 2025-04-30 02:18:33,736 | INFO     | [payload] validate_post thread has finished
[2025-04-30 04:18:45] 2025-04-30 02:18:33,772 | INFO     | [job] control thread has finished
[2025-04-30 04:18:45] 2025-04-30 02:18:34,548 | INFO     | [data] copytool_out thread has finished
[2025-04-30 04:18:45] 2025-04-30 02:18:37,132 | INFO     | [data] queue_monitor thread has finished
[2025-04-30 04:18:45] 2025-04-30 02:18:38,436 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140319813113664)>', '<ExcThread(monitor, started 140319383344896)>']
[2025-04-30 04:18:45] 2025-04-30 02:18:38,616 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-30 04:18:45] 2025-04-30 02:18:38,616 | INFO     | [monitor] control thread has ended
[2025-04-30 04:18:45] 2025-04-30 02:18:43,460 | INFO     | all workflow threads have been joined
[2025-04-30 04:18:45] 2025-04-30 02:18:43,460 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-30 04:18:45] 2025-04-30 02:18:43,460 | INFO     | traces error code: 0
[2025-04-30 04:18:45] 2025-04-30 02:18:43,460 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-30 04:18:45] 2025-04-30 02:18:43,804 [wrapper] ==== pilot stdout END ====
[2025-04-30 04:18:45] 2025-04-30 02:18:43,836 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-30 04:18:45] 2025-04-30 02:18:43,880 [wrapper] pilotpid: 1063065
[2025-04-30 04:18:45] 2025-04-30 02:18:43,932 [wrapper] Pilot exit status: 0
[2025-04-30 04:18:45] 2025-04-30 02:18:44,084 [wrapper] pandaids: 6623658516
[2025-04-30 04:18:45] 2025-04-30 02:18:44,449 [wrapper] cleanup supervisor_pilot 1373245 1063066
[2025-04-30 04:18:45] 2025-04-30 02:18:44,504 [wrapper] Test setup, not cleaning
[2025-04-30 04:18:45] 2025-04-30 02:18:44,548 [wrapper] apfmon messages muted
[2025-04-30 04:18:45] 2025-04-30 02:18:44,588 [wrapper] ==== wrapper stdout END ====
[2025-04-30 04:18:45] 2025-04-30 02:18:44,632 [wrapper] ==== wrapper stderr END ====
[2025-04-30 04:18:45]  *** Error codes and diagnostics ***
[2025-04-30 04:18:45]     "exeErrorCode": 0,
[2025-04-30 04:18:45]     "exeErrorDiag": "",
[2025-04-30 04:18:45]     "pilotErrorCode": 0,
[2025-04-30 04:18:45]     "pilotErrorDiag": "",
[2025-04-30 04:18:45]  *** Listing of results directory ***
[2025-04-30 04:18:45] insgesamt 568160
[2025-04-30 04:18:45] -rw-r--r-- 1 boinc boinc    495897 Apr 29 15:07 pilot3.tar.gz
[2025-04-30 04:18:45] -rwx------ 1 boinc boinc     37140 Apr 29 15:15 runpilot2-wrapper.sh
[2025-04-30 04:18:45] -rw-r--r-- 1 boinc boinc      5111 Apr 29 15:15 queuedata.json
[2025-04-30 04:18:45] -rw-r--r-- 1 boinc boinc       100 Apr 30 03:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-30 04:18:45] -rwxr-xr-x 1 boinc boinc      7986 Apr 30 03:00 run_atlas
[2025-04-30 04:18:45] -rw-r--r-- 1 boinc boinc       105 Apr 30 03:00 job.xml
[2025-04-30 04:18:45] -rw-r--r-- 1 boinc boinc      6636 Apr 30 03:00 init_data.xml
[2025-04-30 04:18:45] -rw-r--r-- 2 boinc boinc 413199462 Apr 30 03:00 EVNT.42272441._000001.pool.root.1
[2025-04-30 04:18:45] -rw-r--r-- 2 boinc boinc     17569 Apr 30 03:00 start_atlas.sh
[2025-04-30 04:18:45] drwxrwx--x 2 boinc boinc      4096 Apr 30 03:00 shared
[2025-04-30 04:18:45] -rw-r--r-- 2 boinc boinc    508876 Apr 30 03:00 input.tar.gz
[2025-04-30 04:18:45] -rw-r--r-- 1 boinc boinc         0 Apr 30 03:00 boinc_lockfile
[2025-04-30 04:18:45] -rw-r--r-- 1 boinc boinc      2583 Apr 30 03:00 pandaJob.out
[2025-04-30 04:18:45] -rw------- 1 boinc boinc       456 Apr 30 03:00 setup.sh.local
[2025-04-30 04:18:45] -rw------- 1 boinc boinc    990778 Apr 30 03:00 agis_schedconf.cvmfs.json
[2025-04-30 04:18:45] -rw------- 1 boinc boinc   1596659 Apr 30 03:00 agis_ddmendpoints.agis.ALL.json
[2025-04-30 04:18:45] drwx------ 4 boinc boinc      4096 Apr 30 03:00 pilot3
[2025-04-30 04:18:45] -rw------- 1 boinc boinc 163156603 Apr 30 04:16 HITS.44456341._000005.pool.root.1
[2025-04-30 04:18:45] -rw-r--r-- 1 boinc boinc       530 Apr 30 04:16 boinc_task_state.xml
[2025-04-30 04:18:45] -rw------- 1 boinc boinc      1025 Apr 30 04:17 memory_monitor_summary.json
[2025-04-30 04:18:45] -rw------- 1 boinc boinc    356280 Apr 30 04:17 log.44456341._000005.job.log.tgz.1
[2025-04-30 04:18:45] -rw------- 1 boinc boinc        95 Apr 30 04:18 pilot_heartbeat.json
[2025-04-30 04:18:45] -rw------- 1 boinc boinc      7663 Apr 30 04:18 heartbeat.json
[2025-04-30 04:18:45] -rw-r--r-- 1 boinc boinc      8192 Apr 30 04:18 boinc_mmap_file
[2025-04-30 04:18:45] -rw-r--r-- 1 boinc boinc        27 Apr 30 04:18 wrapper_checkpoint.txt
[2025-04-30 04:18:45] -rw------- 1 boinc boinc      4670 Apr 30 04:18 pilotlog.txt
[2025-04-30 04:18:45] -rw------- 1 boinc boinc    440363 Apr 30 04:18 log.44456341._000005.job.log.1
[2025-04-30 04:18:45] -rw------- 1 boinc boinc       357 Apr 30 04:18 output.list
[2025-04-30 04:18:45] -rw-r--r-- 1 boinc boinc       620 Apr 30 04:18 runtime_log
[2025-04-30 04:18:45] -rw------- 1 boinc boinc    819200 Apr 30 04:18 result.tar.gz
[2025-04-30 04:18:45] -rw-r--r-- 1 boinc boinc     11521 Apr 30 04:18 runtime_log.err
[2025-04-30 04:18:45] -rw------- 1 boinc boinc       664 Apr 30 04:18 5lNODmoyzT7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmgiDLDmKYhLem.diag
[2025-04-30 04:18:45] -rw-r--r-- 1 boinc boinc     22146 Apr 30 04:18 stderr.txt
[2025-04-30 04:18:45] HITS file was successfully produced:
[2025-04-30 04:18:45] -rw------- 1 boinc boinc 163156603 Apr 30 04:16 shared/HITS.pool.root.1
[2025-04-30 04:18:45]  *** Contents of shared directory: ***
[2025-04-30 04:18:45] insgesamt 564180
[2025-04-30 04:18:45] -rw-r--r-- 2 boinc boinc 413199462 Apr 30 03:00 ATLAS.root_0
[2025-04-30 04:18:45] -rw-r--r-- 2 boinc boinc     17569 Apr 30 03:00 start_atlas.sh
[2025-04-30 04:18:45] -rw-r--r-- 2 boinc boinc    508876 Apr 30 03:00 input.tar.gz
[2025-04-30 04:18:45] -rw------- 1 boinc boinc 163156603 Apr 30 04:16 HITS.pool.root.1
[2025-04-30 04:18:45] -rw------- 1 boinc boinc    819200 Apr 30 04:18 result.tar.gz
04:18:47 (1058875): run_atlas exited; CPU time 35562.543288
04:18:47 (1058875): called boinc_finish(0)

</stderr_txt>
]]>

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