Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:58:28 (144198): wrapper (7.7.26015): starting
00:58:28 (144198): wrapper: running run_atlas (--nthreads 2)
[2025-04-30 00:58:28] Arguments: --nthreads 2
[2025-04-30 00:58:28] Threads: 2
[2025-04-30 00:58:28] Checking for CVMFS
[2025-04-30 00:58:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-30 00:58:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-30 00:58:29] Running cvmfs_config stat atlas.cern.ch
[2025-04-30 00:58:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-30 00:58:29] 2.11.0.0 57183 45 40468 145432 2 185 2485283 4194305 0 130560 0 230846 99.992 72743 105 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-04-30 00:58:29] CVMFS is ok
[2025-04-30 00:58:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-30 00:58:29] Small home clusters do not require a local http proxy but it is suggested if
[2025-04-30 00:58:29] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-04-30 00:58:29] Further information can be found at the LHC@home message board.
[2025-04-30 00:58:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-30 00:58:29] Checking for apptainer binary...
[2025-04-30 00:58:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-30 00:58:29] Running /usr/bin/apptainer --version
[2025-04-30 00:58:29] apptainer version 1.2.2-1.el8
[2025-04-30 00:58:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-30 00:58:30] bottom
[2025-04-30 00:58:30] apptainer works
[2025-04-30 00:58:30] Set ATHENA_PROC_NUMBER=2
[2025-04-30 00:58:30] Set ATHENA_CORE_NUMBER=2
[2025-04-30 00:58:30] Starting ATLAS job with PandaID=6623664753
[2025-04-30 00:58:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-30 01:08:04]  *** The last 200 lines of the pilot log: ***
[2025-04-30 01:08:05] 2025-04-29 23:07:49,341 | INFO     | CPU arch script returned: x86-64-v1
[2025-04-30 01:08:05] 2025-04-29 23:07:49,342 | WARNING  | file does not exist either: /var/lib/boinc/slots/6/PanDA_Pilot-6623664753/memory_monitor_output.txt
[2025-04-30 01:08:05] 2025-04-29 23:07:49,342 | INFO     | memory summary dictionary not yet available
[2025-04-30 01:08:05] 2025-04-29 23:07:49,343 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-30 01:08:05] 2025-04-29 23:07:49,343 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-30 01:08:05] 2025-04-29 23:07:49,345 | INFO     | ..............................
[2025-04-30 01:08:05] 2025-04-29 23:07:49,345 | INFO     | . Timing measurements:
[2025-04-30 01:08:05] 2025-04-29 23:07:49,345 | INFO     | . get job = 0 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,345 | INFO     | . initial setup = 7 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,346 | INFO     | . payload setup = 13 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,346 | INFO     | . stage-in = 0 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,346 | INFO     | . payload execution = 295 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,346 | INFO     | . stage-out = 0 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,347 | INFO     | . log creation = 0 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,347 | INFO     | ..............................
[2025-04-30 01:08:05] 2025-04-29 23:07:49,347 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-30 01:08:05] 2025-04-29 23:07:49,348 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/6/PanDA_Pilot-6623664753/pilotlog.txt
[2025-04-30 01:08:05] 2025-04-29 23:07:49,378 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-04-30 01:08:05] - Log from pilotlog.txt -
[2025-04-30 01:08:05] 2025-04-29 23:07:46,811 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-30 01:08:05] 2025-04-29 23:07:49,315 | INFO     | monitor loop #155: job 0:6623664753 is in state 'failed'
[2025-04-30 01:08:05] 2025-04-29 23:07:49,315 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-30 01:08:05] 2025-04-29 23:07:49,341 | INFO     | CPU arch script returned: x86-64-v1
[2025-04-30 01:08:05] 2025-04-29 23:07:49,342 | WARNING  | file does not exist either: /var/lib/boinc/slots/6/PanDA_Pilot-6623664753/memory_monitor_output.txt
[2025-04-30 01:08:05] 2025-04-29 23:07:49,342 | INFO     | memory summary dictionary not yet available
[2025-04-30 01:08:05] 2025-04-29 23:07:49,343 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-30 01:08:05] 2025-04-29 23:07:49,343 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-30 01:08:05] 2025-04-29 23:07:49,345 | INFO     | ..............................
[2025-04-30 01:08:05] 2025-04-29 23:07:49,345 | INFO     | . Timing measurements:
[2025-04-30 01:08:05] 2025-04-29 23:07:49,345 | INFO     | . get job = 0 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,345 | INFO     | . initial setup = 7 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,346 | INFO     | . payload setup = 13 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,346 | INFO     | . stage-in = 0 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,346 | INFO     | . payload execution = 295 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,346 | INFO     | . stage-out = 0 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,347 | INFO     | . log creation = 0 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,347 | INFO     | ..............................
[2025-04-30 01:08:05] 2025-04-29 23:07:49,347 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-30 01:08:05] 2025-04-29 23:07:49,348 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/6/PanDA_Pilot-6623664753/pilotlog.txt
[2025-04-30 01:08:05] 2025-04-29 23:07:49,379 | WARNING  | 
[2025-04-30 01:08:05] [begin log extracts]
[2025-04-30 01:08:05] - Log from pilotlog.txt -
[2025-04-30 01:08:05] 2025-04-29 23:07:46,811 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-30 01:08:05] 2025-04-29 23:07:49,315 | INFO     | monitor loop #155: job 0:6623664753 is in state 'failed'
[2025-04-30 01:08:05] 2025-04-29 23:07:49,315 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-30 01:08:05] 2025-04-29 23:07:49,341 | INFO     | CPU arch script returned: x86-64-v1
[2025-04-30 01:08:05] 2025-04-29 23:07:49,342 | WARNING  | file does not exist either: /var/lib/boinc/slots/6/PanDA_Pilot-6623664753/memory_monitor_output.txt
[2025-04-30 01:08:05] 2025-04-29 23:07:49,342 | INFO     | memory summary dictionary not yet available
[2025-04-30 01:08:05] 2025-04-29 23:07:49,343 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-30 01:08:05] 2025-04-29 23:07:49,343 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-30 01:08:05] 2025-04-29 23:07:49,345 | INFO     | ..............................
[2025-04-30 01:08:05] 2025-04-29 23:07:49,345 | INFO     | . Timing measurements:
[2025-04-30 01:08:05] 2025-04-29 23:07:49,345 | INFO     | . get job = 0 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,345 | INFO     | . initial setup = 7 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,346 | INFO     | . payload setup = 13 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,346 | INFO     | . stage-in = 0 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,346 | INFO     | . payload execution = 295 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,346 | INFO     | . stage-out = 0 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,347 | INFO     | . log creation = 0 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,347 | INFO     | ..............................
[2025-04-30 01:08:05] 2025-04-29 23:07:49,347 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-30 01:08:05] 2025-04-29 23:07:49,348 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/6/PanDA_Pilot-6623664753/pilotlog.txt
[2025-04-30 01:08:05] [end log extracts]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,379 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-04-30 01:08:05] 2025-04-29 23:07:49,382 | WARNING  | pilotErrorDiags = ["Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-04-30 01:08:05] 2025-04-29 23:07:49,624 | INFO     | 
[2025-04-30 01:08:05] 2025-04-29 23:07:49,624 | INFO     | job summary report
[2025-04-30 01:08:05] 2025-04-29 23:07:49,624 | INFO     | --------------------------------------------------
[2025-04-30 01:08:05] 2025-04-29 23:07:49,625 | INFO     | PanDA job id: 6623664753
[2025-04-30 01:08:05] 2025-04-29 23:07:49,625 | INFO     | task id: 44456629
[2025-04-30 01:08:05] 2025-04-29 23:07:49,625 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-04-30 01:04:24,334 CRITICAL Transform executor raised TransformValidationExceptio
[2025-04-30 01:08:05] 2025-04-29 23:07:49,625 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-30 01:08:05] 2025-04-29 23:07:49,626 | INFO     | pilot state: failed 
[2025-04-30 01:08:05] 2025-04-29 23:07:49,626 | INFO     | transexitcode: 65
[2025-04-30 01:08:05] 2025-04-29 23:07:49,626 | INFO     | exeerrorcode: 65
[2025-04-30 01:08:05] 2025-04-29 23:07:49,627 | INFO     | exeerrordiag: EVNTtoHITS got a SIGILL signal (exit code 132); Possible memory leak: 'pss' slope: 6804.92 KB/s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,627 | INFO     | exitcode: 65
[2025-04-30 01:08:05] 2025-04-29 23:07:49,627 | INFO     | exitmsg: EVNTtoHITS got a SIGILL signal (exit code 132); Possible memory leak: 'pss' slope: 6804.92 KB/s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,627 | INFO     | cpuconsumptiontime: 265 s
[2025-04-30 01:08:05] 2025-04-29 23:07:49,628 | INFO     | nevents: 0
[2025-04-30 01:08:05] 2025-04-29 23:07:49,628 | INFO     | neventsw: 0
[2025-04-30 01:08:05] 2025-04-29 23:07:49,628 | INFO     | pid: 154104
[2025-04-30 01:08:05] 2025-04-29 23:07:49,629 | INFO     | pgrp: 154104
[2025-04-30 01:08:05] 2025-04-29 23:07:49,629 | INFO     | corecount: 2
[2025-04-30 01:08:05] 2025-04-29 23:07:49,629 | INFO     | event service: False
[2025-04-30 01:08:05] 2025-04-29 23:07:49,629 | INFO     | sizes: {0: 2392942, 1: 2393627, 2: 2393826, 11: 2394032, 13: 2394060, 373: 2418207, 376: 2422445, 377: 2422501, 509: 2422671}
[2025-04-30 01:08:05] 2025-04-29 23:07:49,630 | INFO     | --------------------------------------------------
[2025-04-30 01:08:05] 2025-04-29 23:07:49,630 | INFO     | 
[2025-04-30 01:08:05] 2025-04-29 23:07:49,630 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-04-30 01:08:05] 2025-04-29 23:07:49,673 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,674 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,674 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,674 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,675 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,675 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,675 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,676 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,676 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,676 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,676 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,677 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,677 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,677 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,678 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,678 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,678 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,678 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-30 01:08:05] 2025-04-29 23:07:49,679 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,679 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-30 01:08:05] 2025-04-29 23:07:49,679 | INFO     | job 6623664753 has completed (purged errors)
[2025-04-30 01:08:05] 2025-04-29 23:07:49,680 | INFO     | overall cleanup function is called
[2025-04-30 01:08:05] 2025-04-29 23:07:50,689 | INFO     | --- collectZombieJob: --- 10, [154104]
[2025-04-30 01:08:05] 2025-04-29 23:07:50,689 | INFO     | zombie collector waiting for pid 154104
[2025-04-30 01:08:05] 2025-04-29 23:07:50,690 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-30 01:08:05] 2025-04-29 23:07:50,690 | INFO     | collected zombie processes
[2025-04-30 01:08:05] 2025-04-29 23:07:50,690 | INFO     | will attempt to kill all subprocesses of pid=154104
[2025-04-30 01:08:05] 2025-04-29 23:07:50,839 | INFO     | process IDs to be killed: [154104] (in reverse order)
[2025-04-30 01:08:05] 2025-04-29 23:07:50,921 | WARNING  | found no corresponding commands to process id(s)
[2025-04-30 01:08:05] 2025-04-29 23:07:50,922 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-30 01:08:05] 2025-04-29 23:07:50,929 | INFO     | did not find any defunct processes belonging to 154104
[2025-04-30 01:08:05] 2025-04-29 23:07:50,935 | INFO     | did not find any defunct processes belonging to 154104
[2025-04-30 01:08:05] 2025-04-29 23:07:50,936 | INFO     | ready for new job
[2025-04-30 01:08:05] 2025-04-29 23:07:50,936 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-30 01:08:05] 2025-04-29 23:07:50,939 | INFO     | **************************************
[2025-04-30 01:08:05] 2025-04-29 23:07:50,939 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-30 01:08:05] 2025-04-29 23:07:50,940 | INFO     | **************************************
[2025-04-30 01:08:05] 2025-04-29 23:07:50,940 | INFO     | 
[2025-04-30 01:08:05] 2025-04-29 23:07:50,952 | INFO     | architecture information:
[2025-04-30 01:08:05] 2025-04-29 23:07:50,953 | INFO     | executing command: cat /etc/os-release
[2025-04-30 01:08:05] 2025-04-29 23:07:50,983 | INFO     | cat /etc/os-release:
[2025-04-30 01:08:05] NAME="CentOS Linux"
[2025-04-30 01:08:05] VERSION="7 (Core)"
[2025-04-30 01:08:05] ID="centos"
[2025-04-30 01:08:05] ID_LIKE="rhel fedora"
[2025-04-30 01:08:05] VERSION_ID="7"
[2025-04-30 01:08:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-30 01:08:05] ANSI_COLOR="0;31"
[2025-04-30 01:08:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-30 01:08:05] HOME_URL="https://www.centos.org/"
[2025-04-30 01:08:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-30 01:08:05] 
[2025-04-30 01:08:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-30 01:08:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-30 01:08:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-30 01:08:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-30 01:08:05] 
[2025-04-30 01:08:05] 2025-04-29 23:07:50,984 | INFO     | **************************************
[2025-04-30 01:08:05] 2025-04-29 23:07:51,488 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-04-30 01:08:05] 2025-04-29 23:07:51,522 | INFO     | sufficient remaining disk space (214694887424 B)
[2025-04-30 01:08:05] 2025-04-29 23:07:51,523 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-30 01:08:05] 2025-04-29 23:07:51,523 | INFO     | current server update state: UPDATING_FINAL
[2025-04-30 01:08:05] 2025-04-29 23:07:51,524 | INFO     | update_server=False
[2025-04-30 01:08:05] 2025-04-29 23:07:51,524 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-30 01:08:05] 2025-04-29 23:07:51,525 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-30 01:08:05] 2025-04-29 23:07:51,819 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-30 01:08:05] 2025-04-29 23:07:51,819 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-30 01:08:05] 2025-04-29 23:07:51,819 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-30 01:08:05] 2025-04-29 23:07:51,820 | INFO     | will abort loop
[2025-04-30 01:08:05] 2025-04-29 23:07:51,822 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-30 01:08:05] 2025-04-29 23:07:52,036 | INFO     | PID=147761 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-04-30 01:08:05] 2025-04-29 23:07:52,037 | INFO     | found 0 job(s) in 20 queues
[2025-04-30 01:08:05] 2025-04-29 23:07:52,037 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-30 01:08:05] 2025-04-29 23:07:52,037 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-30 01:08:05] 2025-04-29 23:07:52,136 | INFO     | all job control threads have been joined
[2025-04-30 01:08:05] 2025-04-29 23:07:52,514 | INFO     | all data control threads have been joined
[2025-04-30 01:08:05] 2025-04-29 23:07:52,530 | INFO     | [job] retrieve thread has finished
[2025-04-30 01:08:05] 2025-04-29 23:07:52,530 | INFO     | [job] queue monitor thread has finished
[2025-04-30 01:08:05] 2025-04-29 23:07:52,825 | INFO     | [job] job monitor thread has finished
[2025-04-30 01:08:05] 2025-04-29 23:07:53,025 | INFO     | all payload control threads have been joined
[2025-04-30 01:08:05] 2025-04-29 23:07:53,038 | INFO     | [job] create_data_payload thread has finished
[2025-04-30 01:08:05] 2025-04-29 23:07:53,141 | INFO     | [job] control thread has finished
[2025-04-30 01:08:05] 2025-04-29 23:07:53,285 | INFO     | [payload] validate_post thread has finished
[2025-04-30 01:08:05] 2025-04-29 23:07:53,518 | INFO     | [data] control thread has finished
[2025-04-30 01:08:05] 2025-04-29 23:07:53,633 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-30 01:08:05] 2025-04-29 23:07:53,703 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-30 01:08:05] 2025-04-29 23:07:53,791 | INFO     | [payload] validate_pre thread has finished
[2025-04-30 01:08:05] 2025-04-29 23:07:53,827 | INFO     | [data] copytool_out thread has finished
[2025-04-30 01:08:05] 2025-04-29 23:07:53,836 | INFO     | [payload] execute_payloads thread has finished
[2025-04-30 01:08:05] 2025-04-29 23:07:53,910 | INFO     | [data] copytool_in thread has finished
[2025-04-30 01:08:05] 2025-04-29 23:07:53,976 | INFO     | [job] validate thread has finished
[2025-04-30 01:08:05] 2025-04-29 23:07:54,000 | INFO     | [payload] failed_post thread has finished
[2025-04-30 01:08:05] 2025-04-29 23:07:54,030 | INFO     | [payload] control thread has finished
[2025-04-30 01:08:05] 2025-04-29 23:07:57,710 | INFO     | [data] queue_monitor thread has finished
[2025-04-30 01:08:05] 2025-04-29 23:07:59,280 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139704211941184)>', '<ExcThread(monitor, started 139703760164608)>']
[2025-04-30 01:08:05] 2025-04-29 23:08:00,078 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-30 01:08:05] 2025-04-29 23:08:00,078 | INFO     | [monitor] control thread has ended
[2025-04-30 01:08:05] 2025-04-29 23:08:04,293 | INFO     | all workflow threads have been joined
[2025-04-30 01:08:05] 2025-04-29 23:08:04,293 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-30 01:08:05] 2025-04-29 23:08:04,294 | INFO     | traces error code: 0
[2025-04-30 01:08:05] 2025-04-29 23:08:04,294 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-30 01:08:05] 2025-04-29 23:08:04,516 [wrapper] ==== pilot stdout END ====
[2025-04-30 01:08:05] 2025-04-29 23:08:04,522 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-30 01:08:05] 2025-04-29 23:08:04,529 [wrapper] pilotpid: 147761
[2025-04-30 01:08:05] 2025-04-29 23:08:04,534 [wrapper] Pilot exit status: 0
[2025-04-30 01:08:05] 2025-04-29 23:08:04,628 [wrapper] pandaids: 6623664753
[2025-04-30 01:08:05] 2025-04-29 23:08:04,674 [wrapper] cleanup supervisor_pilot  147767 147762
[2025-04-30 01:08:05] 2025-04-29 23:08:04,682 [wrapper] Test setup, not cleaning
[2025-04-30 01:08:05] 2025-04-29 23:08:04,688 [wrapper] apfmon messages muted
[2025-04-30 01:08:05] 2025-04-29 23:08:04,694 [wrapper] ==== wrapper stdout END ====
[2025-04-30 01:08:05] 2025-04-29 23:08:04,700 [wrapper] ==== wrapper stderr END ====
[2025-04-30 01:08:05]  *** Error codes and diagnostics ***
[2025-04-30 01:08:05]     "exeErrorCode": 65,
[2025-04-30 01:08:05]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132); Possible memory leak: 'pss' slope: 6804.92 KB/s",
[2025-04-30 01:08:05]     "pilotErrorCode": 1305,
[2025-04-30 01:08:05]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132); Possible memory leak: 'pss' slope: 6804.92 KB/s",
[2025-04-30 01:08:05]  *** Listing of results directory ***
[2025-04-30 01:08:05] total 312988
[2025-04-30 01:08:05] -rw-r--r-- 1 boinc boinc      5111 Apr 29 18:28 queuedata.json
[2025-04-30 01:08:05] -rwx------ 1 boinc boinc     37140 Apr 29 18:29 runpilot2-wrapper.sh
[2025-04-30 01:08:05] -rw-r--r-- 1 boinc boinc    495897 Apr 29 18:29 pilot3.tar.gz
[2025-04-30 01:08:05] -rw-r--r-- 1 boinc boinc       100 Apr 30 00:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-30 01:08:05] -rwxr-xr-x 1 boinc boinc      7986 Apr 30 00:57 run_atlas
[2025-04-30 01:08:05] -rw-r--r-- 1 boinc boinc       105 Apr 30 00:57 job.xml
[2025-04-30 01:08:05] -rw-r--r-- 2 boinc boinc 316229805 Apr 30 00:58 EVNT.42273790._000001.pool.root.1
[2025-04-30 01:08:05] -rw-r--r-- 1 boinc boinc      6036 Apr 30 00:58 init_data.xml
[2025-04-30 01:08:05] drwxrwx--x 2 boinc boinc        68 Apr 30 00:58 shared
[2025-04-30 01:08:05] -rw-r--r-- 2 boinc boinc    508878 Apr 30 00:58 input.tar.gz
[2025-04-30 01:08:05] -rw-r--r-- 2 boinc boinc     17569 Apr 30 00:58 start_atlas.sh
[2025-04-30 01:08:05] -rw-r--r-- 1 boinc boinc         0 Apr 30 00:58 boinc_lockfile
[2025-04-30 01:08:05] -rw-r--r-- 1 boinc boinc      2585 Apr 30 00:58 pandaJob.out
[2025-04-30 01:08:05] -rw------- 1 boinc boinc       424 Apr 30 00:58 setup.sh.local
[2025-04-30 01:08:05] -rw------- 1 boinc boinc    989886 Apr 30 00:58 agis_schedconf.cvmfs.json
[2025-04-30 01:08:05] -rw------- 1 boinc boinc   1596659 Apr 30 00:58 agis_ddmendpoints.agis.ALL.json
[2025-04-30 01:08:05] drwx------ 4 boinc boinc       334 Apr 30 00:58 pilot3
[2025-04-30 01:08:05] -rw-r--r-- 1 boinc boinc       525 Apr 30 01:04 boinc_task_state.xml
[2025-04-30 01:08:05] -rw------- 1 boinc boinc     49229 Apr 30 01:05 log.44456629._000024.job.log.tgz.1
[2025-04-30 01:08:05] -rw------- 1 boinc boinc        95 Apr 30 01:06 pilot_heartbeat.json
[2025-04-30 01:08:05] -rw-r--r-- 1 boinc boinc      8192 Apr 30 01:07 boinc_mmap_file
[2025-04-30 01:08:05] -rw-r--r-- 1 boinc boinc        24 Apr 30 01:07 wrapper_checkpoint.txt
[2025-04-30 01:08:05] -rw------- 1 boinc boinc      8245 Apr 30 01:07 heartbeat.json
[2025-04-30 01:08:05] -rw------- 1 boinc boinc      4858 Apr 30 01:08 pilotlog.txt
[2025-04-30 01:08:05] -rw------- 1 boinc boinc    175102 Apr 30 01:08 log.44456629._000024.job.log.1
[2025-04-30 01:08:05] -rw------- 1 boinc boinc       188 Apr 30 01:08 output.list
[2025-04-30 01:08:05] -rw-r--r-- 1 boinc boinc       620 Apr 30 01:08 runtime_log
[2025-04-30 01:08:05] -rw------- 1 boinc boinc    245760 Apr 30 01:08 result.tar.gz
[2025-04-30 01:08:05] -rw-r--r-- 1 boinc boinc     10815 Apr 30 01:08 runtime_log.err
[2025-04-30 01:08:05] -rw------- 1 boinc boinc       639 Apr 30 01:08 PSdKDm302T7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmkoDLDmRGzoqm.diag
[2025-04-30 01:08:05] -rw-r--r-- 1 boinc boinc     22107 Apr 30 01:08 stderr.txt
[2025-04-30 01:08:05] No HITS result produced
[2025-04-30 01:08:05]  *** Contents of shared directory: ***
[2025-04-30 01:08:05] total 309580
[2025-04-30 01:08:05] -rw-r--r-- 2 boinc boinc 316229805 Apr 30 00:58 ATLAS.root_0
[2025-04-30 01:08:05] -rw-r--r-- 2 boinc boinc    508878 Apr 30 00:58 input.tar.gz
[2025-04-30 01:08:05] -rw-r--r-- 2 boinc boinc     17569 Apr 30 00:58 start_atlas.sh
[2025-04-30 01:08:05] -rw------- 1 boinc boinc    245760 Apr 30 01:08 result.tar.gz
01:08:06 (144198): run_atlas exited; CPU time 246.404705
01:08:06 (144198): called boinc_finish(0)

</stderr_txt>
]]>

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