Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-29 15:05:35 (13568): Detected: vboxwrapper 26206
2025-04-29 15:05:35 (13568): Detected: BOINC client v8.0.4
2025-04-29 15:05:35 (13568): Detected: VirtualBox VboxManage Interface (Version: 7.0.24)
2025-04-29 15:05:36 (13568): Successfully copied 'init_data.xml' to the shared directory.
2025-04-29 15:05:36 (13568): Create VM. (boinc_071e9e02905ccfea, slot#3)
2025-04-29 15:05:37 (13568): Setting Memory Size for VM. (4400MB)
2025-04-29 15:05:37 (13568): Setting CPU Count for VM. (4)
2025-04-29 15:05:37 (13568): Setting Chipset Options for VM.
2025-04-29 15:05:38 (13568): Setting Graphics Controller Options for VM.
2025-04-29 15:05:38 (13568): Setting Boot Options for VM.
2025-04-29 15:05:38 (13568): Setting Network Configuration for NAT.
2025-04-29 15:05:38 (13568): Enabling VM Network Access.
2025-04-29 15:05:39 (13568): Disabling USB Support for VM.
2025-04-29 15:05:39 (13568): Disabling COM Port Support for VM.
2025-04-29 15:05:39 (13568): Disabling LPT Port Support for VM.
2025-04-29 15:05:39 (13568): Disabling Audio Support for VM.
2025-04-29 15:05:40 (13568): Disabling Clipboard Support for VM.
2025-04-29 15:05:40 (13568): Disabling Drag and Drop Support for VM.
2025-04-29 15:05:40 (13568): Adding storage controller(s) to VM.
2025-04-29 15:05:40 (13568): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-29 15:05:41 (13568): Adding VirtualBox Guest Additions to VM.
2025-04-29 15:05:41 (13568): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-29 15:05:41 (13568): forwarding host port 49904 to guest port 80
2025-04-29 15:05:42 (13568): Enabling remote desktop for VM.
2025-04-29 15:05:42 (13568): Required extension pack not installed, remote desktop not enabled.
2025-04-29 15:05:42 (13568): Enabling shared directory for VM.
2025-04-29 15:05:42 (13568): Starting VM using VBoxManage interface. (boinc_071e9e02905ccfea, slot#3)
2025-04-29 15:05:46 (13568): Successfully started VM. (PID = '7316')
2025-04-29 15:05:46 (13568): Reporting VM Process ID to BOINC.
2025-04-29 15:05:46 (13568): Guest Log: BIOS: VirtualBox 7.0.24
2025-04-29 15:05:46 (13568): Guest Log: CPUID EDX: 0x178bfbff
2025-04-29 15:05:46 (13568): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-29 15:05:46 (13568): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-29 15:05:46 (13568): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-29 15:05:46 (13568): Detected: Web Application Enabled (http://localhost:49904)
2025-04-29 15:05:46 (13568): Preference change detected
2025-04-29 15:05:46 (13568): Setting CPU throttle for VM. (100%)
2025-04-29 15:05:47 (13568): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-29 15:05:48 (13568): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-29 15:05:48 (13568): Guest Log: BIOS: Booting from Hard Disk...
2025-04-29 15:05:51 (13568): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-29 15:05:51 (13568): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-29 15:05:51 (13568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-29 15:05:56 (13568): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-29 15:05:56 (13568): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-29 15:06:02 (13568): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-29 15:06:02 (13568): Guest Log: 00:00:00.000135 main     Log opened 2025-04-29T15:06:01.120401000Z
2025-04-29 15:06:02 (13568): Guest Log: 00:00:00.000215 main     OS Product: Linux
2025-04-29 15:06:02 (13568): Guest Log: 00:00:00.000264 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-29 15:06:02 (13568): Guest Log: 00:00:00.000287 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-29 15:06:02 (13568): Guest Log: 00:00:00.000309 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-29 15:06:02 (13568): Guest Log: 00:00:00.000309 main     Process ID: 1298
2025-04-29 15:06:02 (13568): Guest Log: 00:00:00.000310 main     Package type: LINUX_64BITS_GENERIC
2025-04-29 15:06:02 (13568): Guest Log: 00:00:00.001978 main     5.2.32 r132073 started. Verbose level = 0
2025-04-29 15:06:02 (13568): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-29 15:06:02 (13568): Guest Log: [INFO] Mounting shared directory
2025-04-29 15:06:02 (13568): Guest Log: [INFO] Checking for init_data.xml
2025-04-29 15:06:05 (13568): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-29 15:06:05 (13568): Guest Log: [INFO] Detected branch: prod
2025-04-29 15:06:05 (13568): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-29 15:06:05 (13568): Guest Log: Copying input files
2025-04-29 15:06:07 (13568): Guest Log: Copied input files into RunAtlas.
2025-04-29 15:06:07 (13568): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-29 15:06:07 (13568): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-29 15:06:07 (13568): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-29 15:06:07 (13568): Guest Log: Further information can be found at the LHC@home message board.
2025-04-29 15:06:12 (13568): Guest Log: 00:00:10.007977 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 553 042 000ns (GuestNow=1 745 953 572 680 130 000 ns GuestLast=1 745 939 161 127 088 000 ns fSetTimeLastLoop=true )
2025-04-29 15:06:15 (13568): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-29 15:06:15 (13568): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-29 15:06:15 (13568): Guest Log: 2.6.3.0 1593 0 32144 145426 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-29 15:06:16 (13568): Guest Log: copied the webapp to /var/www
2025-04-29 15:06:16 (13568): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-29 15:06:16 (13568): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-29 15:06:16 (13568): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-29 15:06:16 (13568): Guest Log:  *** Starting ATLAS job. (PandaID=6618755129 taskID=44292257) ***
2025-04-29 16:45:51 (13568): Status Report: Elapsed Time: '6000.000000'
2025-04-29 16:45:51 (13568): Status Report: CPU Time: '15370.937500'
2025-04-29 18:24:11 (13568): Guest Log:  *** Job finished ***
2025-04-29 18:24:11 (13568): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:23:56,061 | INFO     | [data] queue_monitor thread has finished
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:00,000 | INFO     | job.realtimelogging is not enabled
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:01,002 | INFO     | [payload] run_realtimelog thread has finished
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:02,203 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140483314718528)>', '<ExcThread(monitor, started 140482701141760)>']
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:02,967 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:02,967 | INFO     | [monitor] control thread has ended
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:07,222 | INFO     | all workflow threads have been joined
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:07,222 | INFO     | end of generic workflow (traces error code: 0)
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:07,222 | INFO     | traces error code: 0
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:07,223 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:07,311 [wrapper] ==== pilot stdout END ====
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:07,330 [wrapper] ==== wrapper stdout RESUME ====
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:07,347 [wrapper] pilotpid: 5901
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:07,356 [wrapper] Pilot exit status: 0
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:07,459 [wrapper] pandaids: 6618755129
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:07,565 [wrapper] cleanup supervisor_pilot 11042 5902
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:07,578 [wrapper] Test setup, not cleaning
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:07,595 [wrapper] apfmon messages muted
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:07,608 [wrapper] ==== wrapper stdout END ====
2025-04-29 18:24:11 (13568): Guest Log: 2025-04-29 22:24:07,620 [wrapper] ==== wrapper stderr END ====
2025-04-29 18:24:11 (13568): Guest Log:  *** Error codes and diagnostics ***
2025-04-29 18:24:11 (13568): Guest Log:     "exeErrorCode": 0,
2025-04-29 18:24:11 (13568): Guest Log:     "exeErrorDiag": "",
2025-04-29 18:24:11 (13568): Guest Log:     "pilotErrorCode": 0,
2025-04-29 18:24:11 (13568): Guest Log:     "pilotErrorDiag": "",
2025-04-29 18:24:11 (13568): Guest Log:  *** Listing of results directory ***
2025-04-29 18:24:11 (13568): Guest Log: total 199136
2025-04-29 18:24:11 (13568): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 28 10:46 pilot3.tar.gz
2025-04-29 18:24:11 (13568): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 28 11:01 queuedata.json
2025-04-29 18:24:11 (13568): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 28 11:02 runpilot2-wrapper.sh
2025-04-29 18:24:11 (13568): Guest Log: -rwxr-xr-x. 1 atlas atlas     15521 Apr 29 19:06 init_data.xml
2025-04-29 18:24:11 (13568): Guest Log: -rwxr-xr-x. 1 atlas atlas    508884 Apr 29 19:06 input.tar.gz
2025-04-29 18:24:11 (13568): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 29 19:06 start_atlas.sh
2025-04-29 18:24:11 (13568): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 29 19:06 EVNT.44292255._003743.pool.root.1 -> /data/./ATLAS.root_0
2025-04-29 18:24:11 (13568): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Apr 29 19:06 pandaJob.out
2025-04-29 18:24:11 (13568): Guest Log: -rw-------. 1 atlas atlas       424 Apr 29 19:06 setup.sh.local
2025-04-29 18:24:11 (13568): Guest Log: -rw-------. 1 atlas atlas    989902 Apr 29 19:07 agis_schedconf.cvmfs.json
2025-04-29 18:24:11 (13568): Guest Log: drwx------. 4 atlas atlas      4096 Apr 29 19:07 pilot3
2025-04-29 18:24:11 (13568): Guest Log: -rw-------. 1 atlas atlas 197575330 Apr 29 22:22 HITS.44292257._031853.pool.root.1
2025-04-29 18:24:11 (13568): Guest Log: -rw-------. 1 atlas atlas      1030 Apr 29 22:23 memory_monitor_summary.json
2025-04-29 18:24:11 (13568): Guest Log: -rw-------. 1 atlas atlas   1596659 Apr 29 22:23 agis_ddmendpoints.agis.ALL.json
2025-04-29 18:24:11 (13568): Guest Log: -rw-------. 1 atlas atlas    290115 Apr 29 22:23 log.44292257._031853.job.log.tgz.1
2025-04-29 18:24:11 (13568): Guest Log: -rw-------. 1 atlas atlas        95 Apr 29 22:23 pilot_heartbeat.json
2025-04-29 18:24:11 (13568): Guest Log: -rw-------. 1 atlas atlas      7720 Apr 29 22:23 heartbeat.json
2025-04-29 18:24:11 (13568): Guest Log: -rw-------. 1 atlas atlas      4485 Apr 29 22:24 pilotlog.txt
2025-04-29 18:24:11 (13568): Guest Log: -rw-------. 1 atlas atlas    993367 Apr 29 22:24 log.44292257._031853.job.log.1
2025-04-29 18:24:11 (13568): Guest Log: -rw-------. 1 atlas atlas       357 Apr 29 22:24 output.list
2025-04-29 18:24:11 (13568): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 29 22:24 runtime_log
2025-04-29 18:24:11 (13568): Guest Log: -rw-------. 1 atlas atlas   1300480 Apr 29 22:24 result.tar.gz
2025-04-29 18:24:11 (13568): Guest Log: -rw-------. 1 atlas atlas       649 Apr 29 22:24 XAxLDmRRbT7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmejuLDmgzdURn.diag
2025-04-29 18:24:11 (13568): Guest Log: -rw-r--r--. 1 atlas atlas     10912 Apr 29 22:24 runtime_log.err
2025-04-29 18:24:11 (13568): Guest Log: Looking for outputfile HITS.44292257._031853.pool.root.1
2025-04-29 18:24:11 (13568): Guest Log: HITS file was successfully produced
2025-04-29 18:24:11 (13568): Guest Log: -rw-------. 1 atlas atlas 197575330 Apr 29 22:22 /home/atlas/RunAtlas/HITS.44292257._031853.pool.root.1
2025-04-29 18:24:14 (13568): Guest Log: Successfully finished the ATLAS job!
2025-04-29 18:24:14 (13568): Guest Log: Copying the results back to the shared directory!
2025-04-29 18:24:14 (13568): Guest Log:  *** Contents of shared directory: ***
2025-04-29 18:24:14 (13568): Guest Log: total 221240
2025-04-29 18:24:14 (13568): Guest Log: -rwxrwxrwx. 1 root root  27117822 Apr 29 19:05 ATLAS.root_0
2025-04-29 18:24:14 (13568): Guest Log: -rwxrwxrwx. 1 root root 197575330 Apr 29 22:24 HITS.pool.root.1
2025-04-29 18:24:14 (13568): Guest Log: -rwxrwxrwx. 1 root root     15521 Apr 29 19:05 init_data.xml
2025-04-29 18:24:14 (13568): Guest Log: -rwxrwxrwx. 1 root root    508884 Apr 29 19:05 input.tar.gz
2025-04-29 18:24:14 (13568): Guest Log: -rwxrwxrwx. 1 root root   1300480 Apr 29 22:24 result.tar.gz
2025-04-29 18:24:14 (13568): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 29 19:05 start_atlas.sh
2025-04-29 18:24:14 (13568): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-29 18:24:14 (13568): VM Completion File Detected.
2025-04-29 18:24:14 (13568): Powering off VM.
2025-04-29 18:24:14 (13568): Successfully stopped VM.
2025-04-29 18:24:14 (13568): Deregistering VM. (boinc_071e9e02905ccfea, slot#3)
2025-04-29 18:24:14 (13568): Removing network bandwidth throttle group from VM.
2025-04-29 18:24:14 (13568): Removing VM from VirtualBox.
18:24:20 (13568): called boinc_finish(0)

</stderr_txt>
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