Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-29 21:59:14 (5416): Detected: vboxwrapper 26206
2025-04-29 21:59:14 (5416): Detected: BOINC client v8.0.2
2025-04-29 21:59:15 (5416): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-04-29 21:59:15 (5416): Successfully copied 'init_data.xml' to the shared directory.
2025-04-29 21:59:15 (5416): Create VM. (boinc_e29774e27ec0280c, slot#9)
2025-04-29 21:59:16 (5416): Setting Memory Size for VM. (4300MB)
2025-04-29 21:59:16 (5416): Setting CPU Count for VM. (3)
2025-04-29 21:59:16 (5416): Setting Chipset Options for VM.
2025-04-29 21:59:17 (5416): Setting Graphics Controller Options for VM.
2025-04-29 21:59:17 (5416): Setting Boot Options for VM.
2025-04-29 21:59:17 (5416): Setting Network Configuration for NAT.
2025-04-29 21:59:17 (5416): Enabling VM Network Access.
2025-04-29 21:59:18 (5416): Disabling USB Support for VM.
2025-04-29 21:59:18 (5416): Disabling COM Port Support for VM.
2025-04-29 21:59:18 (5416): Disabling LPT Port Support for VM.
2025-04-29 21:59:18 (5416): Disabling Audio Support for VM.
2025-04-29 21:59:19 (5416): Disabling Clipboard Support for VM.
2025-04-29 21:59:19 (5416): Disabling Drag and Drop Support for VM.
2025-04-29 21:59:19 (5416): Adding storage controller(s) to VM.
2025-04-29 21:59:19 (5416): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-29 21:59:20 (5416): Adding VirtualBox Guest Additions to VM.
2025-04-29 21:59:20 (5416): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-29 21:59:21 (5416): forwarding host port 60238 to guest port 80
2025-04-29 21:59:21 (5416): Enabling remote desktop for VM.
2025-04-29 21:59:21 (5416): Required extension pack not installed, remote desktop not enabled.
2025-04-29 21:59:21 (5416): Enabling shared directory for VM.
2025-04-29 21:59:22 (5416): Starting VM using VBoxManage interface. (boinc_e29774e27ec0280c, slot#9)
2025-04-29 21:59:27 (5416): Successfully started VM. (PID = '27428')
2025-04-29 21:59:27 (5416): Reporting VM Process ID to BOINC.
2025-04-29 21:59:27 (5416): Guest Log: BIOS: VirtualBox 7.1.8
2025-04-29 21:59:27 (5416): Guest Log: CPUID EDX: 0x178bfbff
2025-04-29 21:59:27 (5416): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-29 21:59:27 (5416): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-29 21:59:27 (5416): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-29 21:59:27 (5416): Detected: Web Application Enabled (http://localhost:60238)
2025-04-29 21:59:27 (5416): Preference change detected
2025-04-29 21:59:27 (5416): Setting CPU throttle for VM. (100%)
2025-04-29 21:59:27 (5416): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-29 21:59:29 (5416): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-29 21:59:29 (5416): Guest Log: BIOS: Booting from Hard Disk...
2025-04-29 21:59:31 (5416): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-29 21:59:31 (5416): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-29 21:59:31 (5416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-29 21:59:38 (5416): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-29 21:59:38 (5416): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-29 21:59:43 (5416): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-29 21:59:43 (5416): Guest Log: 00:00:00.000134 main     Log opened 2025-04-29T21:59:41.191985000Z
2025-04-29 21:59:43 (5416): Guest Log: 00:00:00.000227 main     OS Product: Linux
2025-04-29 21:59:43 (5416): Guest Log: 00:00:00.000243 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-29 21:59:43 (5416): Guest Log: 00:00:00.000257 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-29 21:59:43 (5416): Guest Log: 00:00:00.000272 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-29 21:59:43 (5416): Guest Log: 00:00:00.000272 main     Process ID: 1292
2025-04-29 21:59:43 (5416): Guest Log: 00:00:00.000273 main     Package type: LINUX_64BITS_GENERIC
2025-04-29 21:59:43 (5416): Guest Log: 00:00:00.000964 main     5.2.32 r132073 started. Verbose level = 0
2025-04-29 21:59:43 (5416): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-29 21:59:43 (5416): Guest Log: [INFO] Mounting shared directory
2025-04-29 21:59:43 (5416): Guest Log: [INFO] Checking for init_data.xml
2025-04-29 21:59:53 (5416): Guest Log: 00:00:10.007611 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 755 694 000ns (GuestNow=1 745 956 792 443 361 000 ns GuestLast=1 745 963 981 199 055 000 ns fSetTimeLastLoop=true )
2025-04-29 21:59:54 (5416): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-29 21:59:54 (5416): Guest Log: [INFO] Detected branch: prod
2025-04-29 21:59:55 (5416): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-29 21:59:55 (5416): Guest Log: Copying input files
2025-04-29 21:59:55 (5416): Guest Log: Copied input files into RunAtlas.
2025-04-29 21:59:56 (5416): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-29 21:59:56 (5416): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-29 21:59:56 (5416): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-29 21:59:56 (5416): Guest Log: Further information can be found at the LHC@home message board.
2025-04-29 22:00:07 (5416): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-29 22:00:09 (5416): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-29 22:00:09 (5416): Guest Log: 2.6.3.0 1569 0 30176 145427 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-29 22:00:09 (5416): Guest Log: copied the webapp to /var/www
2025-04-29 22:00:09 (5416): Guest Log: ATHENA_PROC_NUMBER=3
2025-04-29 22:00:09 (5416): Guest Log: ATHENA_CORE_NUMBER=3
2025-04-29 22:00:10 (5416): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-29 22:00:10 (5416): Guest Log:  *** Starting ATLAS job. (PandaID=6619131454 taskID=44270688) ***
2025-04-29 23:39:30 (5416): Status Report: Elapsed Time: '6000.000000'
2025-04-29 23:39:30 (5416): Status Report: CPU Time: '1973.140625'
2025-04-30 01:19:33 (5416): Status Report: Elapsed Time: '12000.000000'
2025-04-30 01:19:33 (5416): Status Report: CPU Time: '19878.328125'
2025-04-30 03:00:18 (5416): Status Report: Elapsed Time: '18000.000000'
2025-04-30 03:00:18 (5416): Status Report: CPU Time: '37899.437500'
2025-04-30 03:37:17 (5416): Guest Log:  *** Job finished ***
2025-04-30 03:37:17 (5416): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:20,396 | INFO     | [payload] execute_payloads thread has finished
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:20,509 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:24,514 | INFO     | [data] queue_monitor thread has finished
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:24,764 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140386962396992)>', '<ExcThread(monitor, started 140386307667712)>']
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:24,961 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:24,961 | INFO     | [monitor] control thread has ended
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:29,769 | INFO     | all workflow threads have been joined
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:29,770 | INFO     | end of generic workflow (traces error code: 0)
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:29,770 | INFO     | traces error code: 0
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:29,770 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:29,854 [wrapper] ==== pilot stdout END ====
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:29,857 [wrapper] ==== wrapper stdout RESUME ====
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:29,860 [wrapper] pilotpid: 15542
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:29,863 [wrapper] Pilot exit status: 0
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:30,164 [wrapper] pandaids: 6619131454
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:30,181 [wrapper] cleanup supervisor_pilot 21307 15543
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:30,184 [wrapper] Test setup, not cleaning
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:30,187 [wrapper] apfmon messages muted
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:30,189 [wrapper] ==== wrapper stdout END ====
2025-04-30 03:37:17 (5416): Guest Log: 2025-04-30 01:37:30,191 [wrapper] ==== wrapper stderr END ====
2025-04-30 03:37:17 (5416): Guest Log:  *** Error codes and diagnostics ***
2025-04-30 03:37:17 (5416): Guest Log:     "exeErrorCode": 0,
2025-04-30 03:37:17 (5416): Guest Log:     "exeErrorDiag": "",
2025-04-30 03:37:17 (5416): Guest Log:     "pilotErrorCode": 0,
2025-04-30 03:37:17 (5416): Guest Log:     "pilotErrorDiag": "",
2025-04-30 03:37:17 (5416): Guest Log:  *** Listing of results directory ***
2025-04-30 03:37:17 (5416): Guest Log: total 210108
2025-04-30 03:37:17 (5416): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 28 13:55 pilot3.tar.gz
2025-04-30 03:37:17 (5416): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 28 14:12 queuedata.json
2025-04-30 03:37:17 (5416): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 28 14:15 runpilot2-wrapper.sh
2025-04-30 03:37:17 (5416): Guest Log: -rwxr-xr-x. 1 atlas atlas      9072 Apr 29 19:59 init_data.xml
2025-04-30 03:37:17 (5416): Guest Log: -rwxr-xr-x. 1 atlas atlas    508860 Apr 29 19:59 input.tar.gz
2025-04-30 03:37:17 (5416): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 29 19:59 start_atlas.sh
2025-04-30 03:37:17 (5416): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 29 19:59 EVNT.44270686._000056.pool.root.1 -> /data/./ATLAS.root_0
2025-04-30 03:37:17 (5416): Guest Log: -rw-r--r--. 1 atlas atlas      2467 Apr 29 20:00 pandaJob.out
2025-04-30 03:37:17 (5416): Guest Log: -rw-------. 1 atlas atlas       424 Apr 29 20:06 setup.sh.local
2025-04-30 03:37:17 (5416): Guest Log: -rw-------. 1 atlas atlas    989894 Apr 29 20:29 agis_schedconf.cvmfs.json
2025-04-30 03:37:17 (5416): Guest Log: drwx------. 4 atlas atlas      4096 Apr 29 20:29 pilot3
2025-04-30 03:37:17 (5416): Guest Log: -rw-------. 1 atlas atlas        95 Apr 30 01:36 pilot_heartbeat.json
2025-04-30 03:37:17 (5416): Guest Log: -rw-------. 1 atlas atlas 207562261 Apr 30 01:36 HITS.44270688._001387.pool.root.1
2025-04-30 03:37:17 (5416): Guest Log: -rw-------. 1 atlas atlas      1027 Apr 30 01:36 memory_monitor_summary.json
2025-04-30 03:37:17 (5416): Guest Log: -rw-------. 1 atlas atlas   1596659 Apr 30 01:37 agis_ddmendpoints.agis.ALL.json
2025-04-30 03:37:17 (5416): Guest Log: -rw-------. 1 atlas atlas    340852 Apr 30 01:37 log.44270688._001387.job.log.tgz.1
2025-04-30 03:37:17 (5416): Guest Log: -rw-------. 1 atlas atlas      7681 Apr 30 01:37 heartbeat.json
2025-04-30 03:37:17 (5416): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 30 01:37 pilotlog.txt
2025-04-30 03:37:17 (5416): Guest Log: -rw-------. 1 atlas atlas   1569326 Apr 30 01:37 log.44270688._001387.job.log.1
2025-04-30 03:37:17 (5416): Guest Log: -rw-------. 1 atlas atlas       357 Apr 30 01:37 output.list
2025-04-30 03:37:17 (5416): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 30 01:37 runtime_log
2025-04-30 03:37:17 (5416): Guest Log: -rw-------. 1 atlas atlas   1925120 Apr 30 01:37 result.tar.gz
2025-04-30 03:37:17 (5416): Guest Log: -rw-r--r--. 1 atlas atlas     10902 Apr 30 01:37 runtime_log.err
2025-04-30 03:37:17 (5416): Guest Log: -rw-------. 1 atlas atlas       648 Apr 30 01:37 16fLDmNReT7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm75uLDmBBjFVn.diag
2025-04-30 03:37:17 (5416): Guest Log: Looking for outputfile HITS.44270688._001387.pool.root.1
2025-04-30 03:37:17 (5416): Guest Log: HITS file was successfully produced
2025-04-30 03:37:17 (5416): Guest Log: -rw-------. 1 atlas atlas 207562261 Apr 30 01:36 /home/atlas/RunAtlas/HITS.44270688._001387.pool.root.1
2025-04-30 03:37:17 (5416): Guest Log: Successfully finished the ATLAS job!
2025-04-30 03:37:17 (5416): Guest Log: Copying the results back to the shared directory!
2025-04-30 03:37:17 (5416): Guest Log:  *** Contents of shared directory: ***
2025-04-30 03:37:18 (5416): Guest Log: total 414196
2025-04-30 03:37:18 (5416): Guest Log: -rwxrwxrwx. 1 root root 214097997 Apr 29 19:59 ATLAS.root_0
2025-04-30 03:37:18 (5416): Guest Log: -rwxrwxrwx. 1 root root 207562261 Apr 30 01:37 HITS.pool.root.1
2025-04-30 03:37:18 (5416): Guest Log: -rwxrwxrwx. 1 root root      9072 Apr 29 19:59 init_data.xml
2025-04-30 03:37:18 (5416): Guest Log: -rwxrwxrwx. 1 root root    508860 Apr 29 18:52 input.tar.gz
2025-04-30 03:37:18 (5416): Guest Log: -rwxrwxrwx. 1 root root   1925120 Apr 30 01:37 result.tar.gz
2025-04-30 03:37:18 (5416): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 29 18:52 start_atlas.sh
2025-04-30 03:37:18 (5416): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-30 03:37:18 (5416): VM Completion File Detected.
2025-04-30 03:37:18 (5416): Powering off VM.
2025-04-30 03:37:18 (5416): Successfully stopped VM.
2025-04-30 03:37:18 (5416): Deregistering VM. (boinc_e29774e27ec0280c, slot#9)
2025-04-30 03:37:19 (5416): Removing network bandwidth throttle group from VM.
2025-04-30 03:37:19 (5416): Removing VM from VirtualBox.
03:37:24 (5416): called boinc_finish(0)

</stderr_txt>
]]>

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