Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-29 16:21:52 (25852): Detected: vboxwrapper 26206
2025-04-29 16:21:52 (25852): Detected: BOINC client v8.0.2
2025-04-29 16:21:53 (25852): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-04-29 16:21:53 (25852): Successfully copied 'init_data.xml' to the shared directory.
2025-04-29 16:21:54 (25852): Create VM. (boinc_573fdac0fd23e174, slot#1)
2025-04-29 16:21:54 (25852): Setting Memory Size for VM. (4300MB)
2025-04-29 16:21:54 (25852): Setting CPU Count for VM. (3)
2025-04-29 16:21:55 (25852): Setting Chipset Options for VM.
2025-04-29 16:21:55 (25852): Setting Graphics Controller Options for VM.
2025-04-29 16:21:55 (25852): Setting Boot Options for VM.
2025-04-29 16:21:55 (25852): Setting Network Configuration for NAT.
2025-04-29 16:21:56 (25852): Enabling VM Network Access.
2025-04-29 16:21:56 (25852): Disabling USB Support for VM.
2025-04-29 16:21:56 (25852): Disabling COM Port Support for VM.
2025-04-29 16:21:57 (25852): Disabling LPT Port Support for VM.
2025-04-29 16:21:57 (25852): Disabling Audio Support for VM.
2025-04-29 16:21:57 (25852): Disabling Clipboard Support for VM.
2025-04-29 16:21:57 (25852): Disabling Drag and Drop Support for VM.
2025-04-29 16:21:58 (25852): Adding storage controller(s) to VM.
2025-04-29 16:21:58 (25852): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-29 16:22:01 (25852): Adding VirtualBox Guest Additions to VM.
2025-04-29 16:22:01 (25852): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-29 16:22:01 (25852): forwarding host port 56212 to guest port 80
2025-04-29 16:22:02 (25852): Enabling remote desktop for VM.
2025-04-29 16:22:02 (25852): Required extension pack not installed, remote desktop not enabled.
2025-04-29 16:22:02 (25852): Enabling shared directory for VM.
2025-04-29 16:22:02 (25852): Starting VM using VBoxManage interface. (boinc_573fdac0fd23e174, slot#1)
2025-04-29 16:22:06 (25852): Successfully started VM. (PID = '9140')
2025-04-29 16:22:06 (25852): Reporting VM Process ID to BOINC.
2025-04-29 16:22:06 (25852): Guest Log: BIOS: VirtualBox 7.0.22
2025-04-29 16:22:06 (25852): Guest Log: CPUID EDX: 0x178bfbff
2025-04-29 16:22:06 (25852): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-29 16:22:06 (25852): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-29 16:22:06 (25852): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-29 16:22:06 (25852): Detected: Web Application Enabled (http://localhost:56212)
2025-04-29 16:22:06 (25852): Preference change detected
2025-04-29 16:22:06 (25852): Setting CPU throttle for VM. (70%)
2025-04-29 16:22:07 (25852): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-29 16:22:08 (25852): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-29 16:22:08 (25852): Guest Log: BIOS: Booting from Hard Disk...
2025-04-29 16:22:11 (25852): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-29 16:22:11 (25852): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-29 16:22:11 (25852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-29 16:22:17 (25852): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-29 16:22:17 (25852): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-29 16:22:23 (25852): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-29 16:22:23 (25852): Guest Log: 00:00:00.000128 main     Log opened 2025-04-29T16:22:21.677954000Z
2025-04-29 16:22:23 (25852): Guest Log: 00:00:00.000214 main     OS Product: Linux
2025-04-29 16:22:23 (25852): Guest Log: 00:00:00.000235 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-29 16:22:23 (25852): Guest Log: 00:00:00.000251 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-29 16:22:23 (25852): Guest Log: 00:00:00.000268 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-29 16:22:23 (25852): Guest Log: 00:00:00.000268 main     Process ID: 1281
2025-04-29 16:22:23 (25852): Guest Log: 00:00:00.000269 main     Package type: LINUX_64BITS_GENERIC
2025-04-29 16:22:23 (25852): Guest Log: 00:00:00.000762 main     5.2.32 r132073 started. Verbose level = 0
2025-04-29 16:22:23 (25852): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-29 16:22:23 (25852): Guest Log: [INFO] Mounting shared directory
2025-04-29 16:22:23 (25852): Guest Log: [INFO] Checking for init_data.xml
2025-04-29 16:22:33 (25852): Guest Log: 00:00:10.002116 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 266 940 000ns (GuestNow=1 745 936 553 412 479 000 ns GuestLast=1 745 943 741 679 419 000 ns fSetTimeLastLoop=true )
2025-04-29 16:23:40 (25852): VM state change detected. (old = 'running', new = 'paused')
2025-04-29 16:24:00 (25852): VM state change detected. (old = 'paused', new = 'running')
2025-04-29 16:24:39 (25852): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-29 16:24:39 (25852): Guest Log: [INFO] Detected branch: prod
2025-04-29 16:24:39 (25852): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-29 16:24:39 (25852): Guest Log: Copying input files
2025-04-29 16:24:39 (25852): Guest Log: Copied input files into RunAtlas.
2025-04-29 16:24:39 (25852): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-29 16:24:39 (25852): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-29 16:24:39 (25852): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-29 16:24:39 (25852): Guest Log: Further information can be found at the LHC@home message board.
2025-04-29 16:26:03 (25852): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-29 16:26:03 (25852): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-29 16:26:03 (25852): Guest Log: 2.6.3.0 1596 1 30148 145419 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-29 16:26:03 (25852): Guest Log: copied the webapp to /var/www
2025-04-29 16:26:03 (25852): Guest Log: ATHENA_PROC_NUMBER=3
2025-04-29 16:26:03 (25852): Guest Log: ATHENA_CORE_NUMBER=3
2025-04-29 16:26:03 (25852): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-29 16:26:03 (25852): Guest Log:  *** Starting ATLAS job. (PandaID=6621014197 taskID=44292257) ***
2025-04-29 16:35:26 (25852): Guest Log:  *** Job finished ***
2025-04-29 16:35:26 (25852): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:34:54,903 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:34:54,911 | INFO     | [job] validate thread has finished
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:34:58,934 | INFO     | [data] queue_monitor thread has finished
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:00,085 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140115783907136)>', '<ExcThread(monitor, started 140114911028992)>']
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:00,860 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:00,861 | INFO     | [monitor] control thread has ended
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:05,089 | INFO     | all workflow threads have been joined
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:05,089 | INFO     | end of generic workflow (traces error code: 0)
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:05,090 | INFO     | traces error code: 0
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:05,090 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:05,192 [wrapper] ==== pilot stdout END ====
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:05,195 [wrapper] ==== wrapper stdout RESUME ====
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:05,198 [wrapper] pilotpid: 5974
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:05,201 [wrapper] Pilot exit status: 0
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:05,250 [wrapper] pandaids: 6621014197
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:05,271 [wrapper] cleanup supervisor_pilot  5980 5975
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:05,276 [wrapper] Test setup, not cleaning
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:05,279 [wrapper] apfmon messages muted
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:05,282 [wrapper] ==== wrapper stdout END ====
2025-04-29 16:35:26 (25852): Guest Log: 2025-04-29 14:35:05,285 [wrapper] ==== wrapper stderr END ====
2025-04-29 16:35:26 (25852): Guest Log:  *** Error codes and diagnostics ***
2025-04-29 16:35:26 (25852): Guest Log:     "exeErrorCode": 65,
2025-04-29 16:35:26 (25852): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-04-29 16:35:26 (25852): Guest Log:     "pilotErrorCode": 1305,
2025-04-29 16:35:26 (25852): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-04-29 16:35:26 (25852): Guest Log:  *** Listing of results directory ***
2025-04-29 16:35:26 (25852): Guest Log: total 3892
2025-04-29 16:35:26 (25852): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 29 10:05 pilot3.tar.gz
2025-04-29 16:35:26 (25852): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 29 10:23 runpilot2-wrapper.sh
2025-04-29 16:35:26 (25852): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 29 10:23 queuedata.json
2025-04-29 16:35:26 (25852): Guest Log: -rwxr-xr-x. 1 atlas atlas    8915 Apr 29 14:24 init_data.xml
2025-04-29 16:35:26 (25852): Guest Log: -rwxr-xr-x. 1 atlas atlas  508872 Apr 29 14:24 input.tar.gz
2025-04-29 16:35:26 (25852): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 29 14:24 start_atlas.sh
2025-04-29 16:35:26 (25852): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 29 14:24 EVNT.44292255._004182.pool.root.1 -> /data/./ATLAS.root_0
2025-04-29 16:35:26 (25852): Guest Log: -rw-r--r--. 1 atlas atlas    2549 Apr 29 14:25 pandaJob.out
2025-04-29 16:35:26 (25852): Guest Log: -rw-------. 1 atlas atlas     424 Apr 29 14:25 setup.sh.local
2025-04-29 16:35:26 (25852): Guest Log: -rw-------. 1 atlas atlas  997501 Apr 29 14:30 agis_schedconf.cvmfs.json
2025-04-29 16:35:26 (25852): Guest Log: -rw-------. 1 atlas atlas 1596659 Apr 29 14:30 agis_ddmendpoints.agis.ALL.json
2025-04-29 16:35:26 (25852): Guest Log: drwx------. 4 atlas atlas    4096 Apr 29 14:30 pilot3
2025-04-29 16:35:26 (25852): Guest Log: -rw-------. 1 atlas atlas    1011 Apr 29 14:32 memory_monitor_summary.json
2025-04-29 16:35:26 (25852): Guest Log: -rw-------. 1 atlas atlas   20690 Apr 29 14:32 log.44292257._037953.job.log.tgz.1
2025-04-29 16:35:26 (25852): Guest Log: -rw-------. 1 atlas atlas      95 Apr 29 14:34 pilot_heartbeat.json
2025-04-29 16:35:26 (25852): Guest Log: -rw-------. 1 atlas atlas    8420 Apr 29 14:34 heartbeat.json
2025-04-29 16:35:26 (25852): Guest Log: -rw-------. 1 atlas atlas    4536 Apr 29 14:35 pilotlog.txt
2025-04-29 16:35:26 (25852): Guest Log: -rw-------. 1 atlas atlas   78800 Apr 29 14:35 log.44292257._037953.job.log.1
2025-04-29 16:35:26 (25852): Guest Log: -rw-------. 1 atlas atlas     188 Apr 29 14:35 output.list
2025-04-29 16:35:26 (25852): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 29 14:35 runtime_log
2025-04-29 16:35:26 (25852): Guest Log: -rw-------. 1 atlas atlas  122880 Apr 29 14:35 result.tar.gz
2025-04-29 16:35:26 (25852): Guest Log: -rw-------. 1 atlas atlas     639 Apr 29 14:35 WOFKDmXIxT7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm8rwLDm79eVJm.diag
2025-04-29 16:35:26 (25852): Guest Log: -rw-r--r--. 1 atlas atlas   10782 Apr 29 14:35 runtime_log.err
2025-04-29 16:35:26 (25852): Guest Log: Looking for outputfile HITS.44292257._037953.pool.root.1
2025-04-29 16:35:26 (25852): Guest Log: No HITS file was produced
2025-04-29 16:35:26 (25852): Guest Log: Successfully finished the ATLAS job!
2025-04-29 16:35:26 (25852): Guest Log: Copying the results back to the shared directory!
2025-04-29 16:35:26 (25852): Guest Log:  *** Contents of shared directory: ***
2025-04-29 16:35:26 (25852): Guest Log: total 27824
2025-04-29 16:35:26 (25852): Guest Log: -rwxrwxrwx. 1 root root 27822811 Apr 29 14:21 ATLAS.root_0
2025-04-29 16:35:26 (25852): Guest Log: -rwxrwxrwx. 1 root root     8915 Apr 29 14:21 init_data.xml
2025-04-29 16:35:26 (25852): Guest Log: -rwxrwxrwx. 1 root root   508872 Apr 29 14:20 input.tar.gz
2025-04-29 16:35:26 (25852): Guest Log: -rwxrwxrwx. 1 root root   122880 Apr 29  2025 result.tar.gz
2025-04-29 16:35:26 (25852): Guest Log: -rwxrwxrwx. 1 root root    17569 Apr 29 14:20 start_atlas.sh
2025-04-29 16:35:26 (25852): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-29 16:35:26 (25852): VM Completion File Detected.
2025-04-29 16:35:26 (25852): Powering off VM.
2025-04-29 16:35:26 (25852): Successfully stopped VM.
2025-04-29 16:35:26 (25852): Deregistering VM. (boinc_573fdac0fd23e174, slot#1)
2025-04-29 16:35:26 (25852): Removing network bandwidth throttle group from VM.
2025-04-29 16:35:26 (25852): Removing VM from VirtualBox.
16:35:32 (25852): called boinc_finish(0)

</stderr_txt>
]]>

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