Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-29 09:46:43 (48414): Detected: vboxwrapper 26206
2025-04-29 09:46:43 (48414): Detected: BOINC client v7.24.1
2025-04-29 09:46:43 (48414): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2025-04-29 09:46:43 (48414): Successfully copied 'init_data.xml' to the shared directory.
2025-04-29 09:46:43 (48414): Create VM. (boinc_08716c5de883945a, slot#4)
2025-04-29 09:46:43 (48414): Setting Memory Size for VM. (4600MB)
2025-04-29 09:46:43 (48414): Setting CPU Count for VM. (6)
2025-04-29 09:46:43 (48414): Setting Chipset Options for VM.
2025-04-29 09:46:43 (48414): Setting Graphics Controller Options for VM.
2025-04-29 09:46:43 (48414): Setting Boot Options for VM.
2025-04-29 09:46:43 (48414): Setting Network Configuration for NAT.
2025-04-29 09:46:43 (48414): Enabling VM Network Access.
2025-04-29 09:46:43 (48414): Disabling USB Support for VM.
2025-04-29 09:46:44 (48414): Disabling COM Port Support for VM.
2025-04-29 09:46:44 (48414): Disabling LPT Port Support for VM.
2025-04-29 09:46:44 (48414): Disabling Audio Support for VM.
2025-04-29 09:46:44 (48414): Disabling Clipboard Support for VM.
2025-04-29 09:46:44 (48414): Disabling Drag and Drop Support for VM.
2025-04-29 09:46:44 (48414): Adding storage controller(s) to VM.
2025-04-29 09:46:44 (48414): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-29 09:46:45 (48414): Adding VirtualBox Guest Additions to VM.
2025-04-29 09:46:45 (48414): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-29 09:46:45 (48414): forwarding host port 38125 to guest port 80
2025-04-29 09:46:45 (48414): Enabling remote desktop for VM.
2025-04-29 09:46:45 (48414): Required extension pack not installed, remote desktop not enabled.
2025-04-29 09:46:45 (48414): Enabling shared directory for VM.
2025-04-29 09:46:45 (48414): Starting VM using VBoxManage interface. (boinc_08716c5de883945a, slot#4)
2025-04-29 09:46:46 (48414): Successfully started VM. (PID = '48891')
2025-04-29 09:46:46 (48414): Reporting VM Process ID to BOINC.
2025-04-29 09:46:46 (48414): Guest Log: BIOS: VirtualBox 7.0.16
2025-04-29 09:46:46 (48414): Guest Log: CPUID EDX: 0x178bfbff
2025-04-29 09:46:46 (48414): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-29 09:46:46 (48414): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-29 09:46:46 (48414): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-29 09:46:46 (48414): Detected: Web Application Enabled (http://localhost:38125)
2025-04-29 09:46:46 (48414): Preference change detected
2025-04-29 09:46:46 (48414): Setting CPU throttle for VM. (100%)
2025-04-29 09:46:47 (48414): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-29 09:46:48 (48414): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-29 09:46:48 (48414): Guest Log: BIOS: Booting from Hard Disk...
2025-04-29 09:46:51 (48414): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-29 09:46:51 (48414): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-29 09:46:51 (48414): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-29 09:46:59 (48414): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-29 09:46:59 (48414): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-29 09:47:03 (48414): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-29 09:47:03 (48414): Guest Log: 00:00:00.000132 main     Log opened 2025-04-29T14:47:01.007763000Z
2025-04-29 09:47:03 (48414): Guest Log: 00:00:00.000207 main     OS Product: Linux
2025-04-29 09:47:03 (48414): Guest Log: 00:00:00.000219 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-29 09:47:03 (48414): Guest Log: 00:00:00.000233 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-29 09:47:03 (48414): Guest Log: 00:00:00.000245 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-29 09:47:03 (48414): Guest Log: 00:00:00.000245 main     Process ID: 1327
2025-04-29 09:47:03 (48414): Guest Log: 00:00:00.000245 main     Package type: LINUX_64BITS_GENERIC
2025-04-29 09:47:03 (48414): Guest Log: 00:00:00.000837 main     5.2.32 r132073 started. Verbose level = 0
2025-04-29 09:47:03 (48414): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-29 09:47:03 (48414): Guest Log: [INFO] Mounting shared directory
2025-04-29 09:47:03 (48414): Guest Log: [INFO] Checking for init_data.xml
2025-04-29 09:47:08 (48414): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-29 09:47:08 (48414): Guest Log: [INFO] Detected branch: prod
2025-04-29 09:47:09 (48414): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-29 09:47:09 (48414): Guest Log: Copying input files
2025-04-29 09:47:09 (48414): Guest Log: Copied input files into RunAtlas.
2025-04-29 09:47:09 (48414): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-29 09:47:09 (48414): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-29 09:47:09 (48414): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-29 09:47:09 (48414): Guest Log: Further information can be found at the LHC@home message board.
2025-04-29 09:47:17 (48414): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-29 09:47:17 (48414): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-29 09:47:17 (48414): Guest Log: 2.6.3.0 1624 0 32192 145419 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-29 09:47:17 (48414): Guest Log: copied the webapp to /var/www
2025-04-29 09:47:18 (48414): Guest Log: ATHENA_PROC_NUMBER=6
2025-04-29 09:47:18 (48414): Guest Log: ATHENA_CORE_NUMBER=6
2025-04-29 09:47:18 (48414): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-29 09:47:18 (48414): Guest Log:  *** Starting ATLAS job. (PandaID=6618078652 taskID=44292257) ***
2025-04-29 11:09:50 (48414): Guest Log:  *** Job finished ***
2025-04-29 11:09:50 (48414): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:35,713 | INFO     | [data] queue_monitor thread has finished
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:40,007 | INFO     | job.realtimelogging is not enabled
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:41,009 | INFO     | [payload] run_realtimelog thread has finished
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:42,469 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140344026670912)>', '<ExcThread(monitor, started 140343131490048)>']
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:43,362 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:43,362 | INFO     | [monitor] control thread has ended
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:47,486 | INFO     | all workflow threads have been joined
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:47,487 | INFO     | end of generic workflow (traces error code: 0)
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:47,487 | INFO     | traces error code: 0
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:47,487 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:47,555 [wrapper] ==== pilot stdout END ====
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:47,558 [wrapper] ==== wrapper stdout RESUME ====
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:47,561 [wrapper] pilotpid: 5948
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:47,563 [wrapper] Pilot exit status: 0
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:47,663 [wrapper] pandaids: 6618078652
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:47,679 [wrapper] cleanup supervisor_pilot  1763 5949
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:47,682 [wrapper] Test setup, not cleaning
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:47,685 [wrapper] apfmon messages muted
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:47,688 [wrapper] ==== wrapper stdout END ====
2025-04-29 11:09:50 (48414): Guest Log: 2025-04-29 16:09:47,691 [wrapper] ==== wrapper stderr END ====
2025-04-29 11:09:50 (48414): Guest Log:  *** Error codes and diagnostics ***
2025-04-29 11:09:50 (48414): Guest Log:     "exeErrorCode": 0,
2025-04-29 11:09:50 (48414): Guest Log:     "exeErrorDiag": "",
2025-04-29 11:09:50 (48414): Guest Log:     "pilotErrorCode": 0,
2025-04-29 11:09:50 (48414): Guest Log:     "pilotErrorDiag": "",
2025-04-29 11:09:50 (48414): Guest Log:  *** Listing of results directory ***
2025-04-29 11:09:50 (48414): Guest Log: total 196228
2025-04-29 11:09:50 (48414): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 28 00:54 pilot3.tar.gz
2025-04-29 11:09:50 (48414): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 28 01:13 queuedata.json
2025-04-29 11:09:50 (48414): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 28 01:14 runpilot2-wrapper.sh
2025-04-29 11:09:50 (48414): Guest Log: -rw-r--r--. 1 atlas atlas    508884 Apr 29 14:47 input.tar.gz
2025-04-29 11:09:50 (48414): Guest Log: -rw-r--r--. 1 atlas atlas      7046 Apr 29 14:47 init_data.xml
2025-04-29 11:09:50 (48414): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Apr 29 14:47 start_atlas.sh
2025-04-29 11:09:50 (48414): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 29 14:47 EVNT.44292255._003048.pool.root.1 -> /data/./ATLAS.root_0
2025-04-29 11:09:50 (48414): Guest Log: -rw-r--r--. 1 atlas atlas      2551 Apr 29 14:47 pandaJob.out
2025-04-29 11:09:50 (48414): Guest Log: -rw-------. 1 atlas atlas       424 Apr 29 14:47 setup.sh.local
2025-04-29 11:09:50 (48414): Guest Log: -rw-------. 1 atlas atlas    997501 Apr 29 14:47 agis_schedconf.cvmfs.json
2025-04-29 11:09:50 (48414): Guest Log: -rw-------. 1 atlas atlas   1596659 Apr 29 14:47 agis_ddmendpoints.agis.ALL.json
2025-04-29 11:09:50 (48414): Guest Log: drwx------. 4 atlas atlas      4096 Apr 29 14:48 pilot3
2025-04-29 11:09:50 (48414): Guest Log: -rw-------. 1 atlas atlas 195768516 Apr 29 16:08 HITS.44292257._026575.pool.root.1
2025-04-29 11:09:50 (48414): Guest Log: -rw-------. 1 atlas atlas        95 Apr 29 16:08 pilot_heartbeat.json
2025-04-29 11:09:50 (48414): Guest Log: -rw-------. 1 atlas atlas      1038 Apr 29 16:08 memory_monitor_summary.json
2025-04-29 11:09:50 (48414): Guest Log: -rw-------. 1 atlas atlas    268790 Apr 29 16:08 log.44292257._026575.job.log.tgz.1
2025-04-29 11:09:50 (48414): Guest Log: -rw-------. 1 atlas atlas      7743 Apr 29 16:09 heartbeat.json
2025-04-29 11:09:50 (48414): Guest Log: -rw-------. 1 atlas atlas      5110 Apr 29 16:09 pilotlog.txt
2025-04-29 11:09:50 (48414): Guest Log: -rw-------. 1 atlas atlas    428201 Apr 29 16:09 log.44292257._026575.job.log.1
2025-04-29 11:09:50 (48414): Guest Log: -rw-------. 1 atlas atlas       357 Apr 29 16:09 output.list
2025-04-29 11:09:50 (48414): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 29 16:09 runtime_log
2025-04-29 11:09:50 (48414): Guest Log: -rw-------. 1 atlas atlas    716800 Apr 29 16:09 result.tar.gz
2025-04-29 11:09:50 (48414): Guest Log: -rw-------. 1 atlas atlas       657 Apr 29 16:09 XKDODmkFST7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmpbtLDmuQ3kHn.diag
2025-04-29 11:09:50 (48414): Guest Log: -rw-r--r--. 1 atlas atlas     10950 Apr 29 16:09 runtime_log.err
2025-04-29 11:09:50 (48414): Guest Log: Looking for outputfile HITS.44292257._026575.pool.root.1
2025-04-29 11:09:50 (48414): Guest Log: HITS file was successfully produced
2025-04-29 11:09:50 (48414): Guest Log: -rw-------. 1 atlas atlas 195768516 Apr 29 16:08 /home/atlas/RunAtlas/HITS.44292257._026575.pool.root.1
2025-04-29 11:09:50 (48414): Guest Log: Successfully finished the ATLAS job!
2025-04-29 11:09:50 (48414): Guest Log: Copying the results back to the shared directory!
2025-04-29 11:09:50 (48414): Guest Log:  *** Contents of shared directory: ***
2025-04-29 11:09:50 (48414): Guest Log: total 218796
2025-04-29 11:09:50 (48414): Guest Log: -rw-r--r--. 1 root root 222781657 Apr 29 14:46 ATLAS.root_0
2025-04-29 11:09:50 (48414): Guest Log: -rw-r--r--. 1 root root      7046 Apr 29 14:46 init_data.xml
2025-04-29 11:09:50 (48414): Guest Log: -rw-r--r--. 1 root root    508884 Apr 29 14:46 input.tar.gz
2025-04-29 11:09:50 (48414): Guest Log: -rw-r--r--. 1 root root    716800 Apr 29 16:09 result.tar.gz
2025-04-29 11:09:50 (48414): Guest Log: -rw-r--r--. 1 root root     17569 Apr 29 14:46 start_atlas.sh
2025-04-29 11:09:50 (48414): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-29 11:09:50 (48414): VM Completion File Detected.
2025-04-29 11:09:50 (48414): Powering off VM.
2025-04-29 11:09:50 (48414): Successfully stopped VM.
2025-04-29 11:09:50 (48414): Deregistering VM. (boinc_08716c5de883945a, slot#4)
2025-04-29 11:09:50 (48414): Removing network bandwidth throttle group from VM.
2025-04-29 11:09:50 (48414): Removing VM from VirtualBox.
11:09:55 (48414): called boinc_finish(0)

</stderr_txt>
]]>

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