Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-28 20:40:30 (22796): Detected: vboxwrapper 26206
2025-04-28 20:40:30 (22796): Detected: BOINC client v8.0.2
2025-04-28 20:40:30 (22796): Detected: VirtualBox VboxManage Interface (Version: 7.0.8)
2025-04-28 20:40:31 (22796): Successfully copied 'init_data.xml' to the shared directory.
2025-04-28 20:40:31 (22796): Create VM. (boinc_8542f61ad291a28c, slot#3)
2025-04-28 20:40:32 (22796): Setting Memory Size for VM. (4800MB)
2025-04-28 20:40:32 (22796): Setting CPU Count for VM. (8)
2025-04-28 20:40:32 (22796): Setting Chipset Options for VM.
2025-04-28 20:40:33 (22796): Setting Graphics Controller Options for VM.
2025-04-28 20:40:33 (22796): Setting Boot Options for VM.
2025-04-28 20:40:33 (22796): Setting Network Configuration for NAT.
2025-04-28 20:40:33 (22796): Enabling VM Network Access.
2025-04-28 20:40:34 (22796): Disabling USB Support for VM.
2025-04-28 20:40:34 (22796): Disabling COM Port Support for VM.
2025-04-28 20:40:34 (22796): Disabling LPT Port Support for VM.
2025-04-28 20:40:34 (22796): Disabling Audio Support for VM.
2025-04-28 20:40:35 (22796): Disabling Clipboard Support for VM.
2025-04-28 20:40:35 (22796): Disabling Drag and Drop Support for VM.
2025-04-28 20:40:35 (22796): Adding storage controller(s) to VM.
2025-04-28 20:40:35 (22796): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-28 20:40:36 (22796): Adding VirtualBox Guest Additions to VM.
2025-04-28 20:40:36 (22796): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-28 20:40:37 (22796): forwarding host port 52357 to guest port 80
2025-04-28 20:40:37 (22796): Enabling remote desktop for VM.
2025-04-28 20:40:37 (22796): Required extension pack not installed, remote desktop not enabled.
2025-04-28 20:40:37 (22796): Enabling shared directory for VM.
2025-04-28 20:40:38 (22796): Starting VM using VBoxManage interface. (boinc_8542f61ad291a28c, slot#3)
2025-04-28 20:40:46 (22796): Successfully started VM. (PID = '28952')
2025-04-28 20:40:46 (22796): Reporting VM Process ID to BOINC.
2025-04-28 20:40:46 (22796): Guest Log: BIOS: VirtualBox 7.0.8
2025-04-28 20:40:46 (22796): Guest Log: CPUID EDX: 0x178bfbff
2025-04-28 20:40:46 (22796): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-28 20:40:46 (22796): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-28 20:40:46 (22796): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-28 20:40:46 (22796): Detected: Web Application Enabled (http://localhost:52357)
2025-04-28 20:40:46 (22796): Preference change detected
2025-04-28 20:40:46 (22796): Setting CPU throttle for VM. (100%)
2025-04-28 20:40:47 (22796): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-28 20:40:49 (22796): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-28 20:40:49 (22796): Guest Log: BIOS: Booting from Hard Disk...
2025-04-28 20:40:52 (22796): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-28 20:40:52 (22796): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-28 20:40:52 (22796): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-28 20:41:03 (22796): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-28 20:41:03 (22796): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-28 20:41:13 (22796): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-28 20:41:13 (22796): Guest Log: 00:00:00.000147 main     Log opened 2025-04-28T20:41:10.032774000Z
2025-04-28 20:41:13 (22796): Guest Log: 00:00:00.000250 main     OS Product: Linux
2025-04-28 20:41:13 (22796): Guest Log: 00:00:00.000284 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-28 20:41:13 (22796): Guest Log: 00:00:00.000309 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-28 20:41:13 (22796): Guest Log: 00:00:00.000334 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-28 20:41:13 (22796): Guest Log: 00:00:00.000335 main     Process ID: 1366
2025-04-28 20:41:13 (22796): Guest Log: 00:00:00.000335 main     Package type: LINUX_64BITS_GENERIC
2025-04-28 20:41:13 (22796): Guest Log: 00:00:00.001694 main     5.2.32 r132073 started. Verbose level = 0
2025-04-28 20:41:13 (22796): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-28 20:41:13 (22796): Guest Log: [INFO] Mounting shared directory
2025-04-28 20:41:13 (22796): Guest Log: [INFO] Checking for init_data.xml
2025-04-28 20:41:16 (22796): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-28 20:41:16 (22796): Guest Log: [INFO] Detected branch: prod
2025-04-28 20:41:16 (22796): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-28 20:41:16 (22796): Guest Log: Copying input files
2025-04-28 20:41:19 (22796): Guest Log: Copied input files into RunAtlas.
2025-04-28 20:41:19 (22796): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-28 20:41:19 (22796): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-28 20:41:19 (22796): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-28 20:41:19 (22796): Guest Log: Further information can be found at the LHC@home message board.
2025-04-28 20:41:23 (22796): Guest Log: 00:00:10.042025 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 904 367 000ns (GuestNow=1 745 865 682 132 110 000 ns GuestLast=1 745 872 870 036 477 000 ns fSetTimeLastLoop=true )
2025-04-28 20:41:28 (22796): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-28 20:41:28 (22796): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-28 20:41:28 (22796): Guest Log: 2.6.3.0 1641 0 32184 145383 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-28 20:41:29 (22796): Guest Log: copied the webapp to /var/www
2025-04-28 20:41:29 (22796): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-28 20:41:29 (22796): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-28 20:41:29 (22796): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-28 20:41:30 (22796): Guest Log:  *** Starting ATLAS job. (PandaID=6618081473 taskID=44292257) ***
2025-04-28 22:20:52 (22796): Status Report: Elapsed Time: '6000.000000'
2025-04-28 22:20:52 (22796): Status Report: CPU Time: '33788.453125'
2025-04-28 23:29:51 (22796): Guest Log:  *** Job finished ***
2025-04-28 23:29:51 (22796): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:35,518 | INFO     | [data] queue_monitor thread has finished
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:41,941 | INFO     | job.realtimelogging is not enabled
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:42,995 | INFO     | [payload] run_realtimelog thread has finished
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:43,196 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139874764080960)>', '<ExcThread(monitor, started 139873595946752)>']
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:43,288 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:43,289 | INFO     | [monitor] control thread has ended
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:48,198 | INFO     | all workflow threads have been joined
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:48,198 | INFO     | end of generic workflow (traces error code: 0)
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:48,198 | INFO     | traces error code: 0
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:48,198 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:48,374 [wrapper] ==== pilot stdout END ====
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:48,383 [wrapper] ==== wrapper stdout RESUME ====
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:48,396 [wrapper] pilotpid: 5993
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:48,403 [wrapper] Pilot exit status: 0
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:48,767 [wrapper] pandaids: 6618081473
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:48,852 [wrapper] cleanup supervisor_pilot  6988 5994
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:48,859 [wrapper] Test setup, not cleaning
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:48,866 [wrapper] apfmon messages muted
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:48,873 [wrapper] ==== wrapper stdout END ====
2025-04-28 23:29:51 (22796): Guest Log: 2025-04-28 21:29:48,880 [wrapper] ==== wrapper stderr END ====
2025-04-28 23:29:51 (22796): Guest Log:  *** Error codes and diagnostics ***
2025-04-28 23:29:51 (22796): Guest Log:     "exeErrorCode": 0,
2025-04-28 23:29:51 (22796): Guest Log:     "exeErrorDiag": "",
2025-04-28 23:29:51 (22796): Guest Log:     "pilotErrorCode": 0,
2025-04-28 23:29:51 (22796): Guest Log:     "pilotErrorDiag": "",
2025-04-28 23:29:51 (22796): Guest Log:  *** Listing of results directory ***
2025-04-28 23:29:51 (22796): Guest Log: total 200764
2025-04-28 23:29:51 (22796): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 28 03:54 pilot3.tar.gz
2025-04-28 23:29:51 (22796): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 28 04:02 runpilot2-wrapper.sh
2025-04-28 23:29:51 (22796): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 28 04:02 queuedata.json
2025-04-28 23:29:51 (22796): Guest Log: -rwxr-xr-x. 1 atlas atlas      9499 Apr 28 18:41 init_data.xml
2025-04-28 23:29:51 (22796): Guest Log: -rwxr-xr-x. 1 atlas atlas    508879 Apr 28 18:41 input.tar.gz
2025-04-28 23:29:51 (22796): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 28 18:41 start_atlas.sh
2025-04-28 23:29:51 (22796): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 28 18:41 EVNT.44292255._003114.pool.root.1 -> /data/./ATLAS.root_0
2025-04-28 23:29:51 (22796): Guest Log: -rw-r--r--. 1 atlas atlas      2552 Apr 28 18:41 pandaJob.out
2025-04-28 23:29:51 (22796): Guest Log: -rw-------. 1 atlas atlas       424 Apr 28 18:41 setup.sh.local
2025-04-28 23:29:51 (22796): Guest Log: -rw-------. 1 atlas atlas    995073 Apr 28 18:42 agis_schedconf.cvmfs.json
2025-04-28 23:29:51 (22796): Guest Log: -rw-------. 1 atlas atlas   1596659 Apr 28 18:42 agis_ddmendpoints.agis.ALL.json
2025-04-28 23:29:51 (22796): Guest Log: drwx------. 4 atlas atlas      4096 Apr 28 18:42 pilot3
2025-04-28 23:29:51 (22796): Guest Log: -rw-------. 1 atlas atlas 199442987 Apr 28 21:28 HITS.44292257._028234.pool.root.1
2025-04-28 23:29:51 (22796): Guest Log: -rw-------. 1 atlas atlas      1033 Apr 28 21:29 memory_monitor_summary.json
2025-04-28 23:29:51 (22796): Guest Log: -rw-------. 1 atlas atlas        95 Apr 28 21:29 pilot_heartbeat.json
2025-04-28 23:29:51 (22796): Guest Log: -rw-------. 1 atlas atlas    357851 Apr 28 21:29 log.44292257._028234.job.log.tgz.1
2025-04-28 23:29:51 (22796): Guest Log: -rw-------. 1 atlas atlas      7719 Apr 28 21:29 heartbeat.json
2025-04-28 23:29:51 (22796): Guest Log: -rw-------. 1 atlas atlas      4485 Apr 28 21:29 pilotlog.txt
2025-04-28 23:29:51 (22796): Guest Log: -rw-------. 1 atlas atlas    824340 Apr 28 21:29 log.44292257._028234.job.log.1
2025-04-28 23:29:51 (22796): Guest Log: -rw-------. 1 atlas atlas       357 Apr 28 21:29 output.list
2025-04-28 23:29:51 (22796): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 28 21:29 runtime_log
2025-04-28 23:29:51 (22796): Guest Log: -rw-------. 1 atlas atlas   1198080 Apr 28 21:29 result.tar.gz
2025-04-28 23:29:51 (22796): Guest Log: -rw-r--r--. 1 atlas atlas     10972 Apr 28 21:29 runtime_log.err
2025-04-28 23:29:51 (22796): Guest Log: -rw-------. 1 atlas atlas       668 Apr 28 21:29 cyKMDmgsUT7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmASCLDmA34DXm.diag
2025-04-28 23:29:51 (22796): Guest Log: Looking for outputfile HITS.44292257._028234.pool.root.1
2025-04-28 23:29:51 (22796): Guest Log: HITS file was successfully produced
2025-04-28 23:29:51 (22796): Guest Log: -rw-------. 1 atlas atlas 199442987 Apr 28 21:28 /home/atlas/RunAtlas/HITS.44292257._028234.pool.root.1
2025-04-28 23:29:53 (22796): Guest Log: Successfully finished the ATLAS job!
2025-04-28 23:29:53 (22796): Guest Log: Copying the results back to the shared directory!
2025-04-28 23:29:53 (22796): Guest Log:  *** Contents of shared directory: ***
2025-04-28 23:29:53 (22796): Guest Log: total 414040
2025-04-28 23:29:53 (22796): Guest Log: -rwxrwxrwx. 1 root root 222784426 Apr 28 18:40 ATLAS.root_0
2025-04-28 23:29:53 (22796): Guest Log: -rwxrwxrwx. 1 root root 199442987 Apr 28 21:29 HITS.pool.root.1
2025-04-28 23:29:53 (22796): Guest Log: -rwxrwxrwx. 1 root root      9499 Apr 28 18:40 init_data.xml
2025-04-28 23:29:53 (22796): Guest Log: -rwxrwxrwx. 1 root root    508879 Apr 28 09:59 input.tar.gz
2025-04-28 23:29:53 (22796): Guest Log: -rwxrwxrwx. 1 root root   1198080 Apr 28 21:29 result.tar.gz
2025-04-28 23:29:53 (22796): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 28 09:59 start_atlas.sh
2025-04-28 23:29:53 (22796): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-28 23:29:53 (22796): VM Completion File Detected.
2025-04-28 23:29:53 (22796): Powering off VM.
2025-04-28 23:29:54 (22796): Successfully stopped VM.
2025-04-28 23:29:54 (22796): Deregistering VM. (boinc_8542f61ad291a28c, slot#3)
2025-04-28 23:29:54 (22796): Removing network bandwidth throttle group from VM.
2025-04-28 23:29:55 (22796): Removing VM from VirtualBox.
23:30:00 (22796): called boinc_finish(0)

</stderr_txt>
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