Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-28 09:32:03 (497631): Detected: vboxwrapper 26206
2025-04-28 09:32:03 (497631): Detected: BOINC client v8.0.2
2025-04-28 09:32:14 (497631): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-04-28 09:32:14 (497631): Successfully copied 'init_data.xml' to the shared directory.
2025-04-28 09:32:14 (497631): Create VM. (boinc_1dc725378e4f76c6, slot#2)
2025-04-28 09:32:14 (497631): Setting Memory Size for VM. (4300MB)
2025-04-28 09:32:15 (497631): Setting CPU Count for VM. (3)
2025-04-28 09:32:15 (497631): Setting Chipset Options for VM.
2025-04-28 09:32:15 (497631): Setting Graphics Controller Options for VM.
2025-04-28 09:32:15 (497631): Setting Boot Options for VM.
2025-04-28 09:32:15 (497631): Setting Network Configuration for NAT.
2025-04-28 09:32:15 (497631): Enabling VM Network Access.
2025-04-28 09:32:16 (497631): Disabling USB Support for VM.
2025-04-28 09:32:16 (497631): Disabling COM Port Support for VM.
2025-04-28 09:32:16 (497631): Disabling LPT Port Support for VM.
2025-04-28 09:32:17 (497631): Disabling Audio Support for VM.
2025-04-28 09:32:17 (497631): Disabling Clipboard Support for VM.
2025-04-28 09:32:17 (497631): Disabling Drag and Drop Support for VM.
2025-04-28 09:32:17 (497631): Adding storage controller(s) to VM.
2025-04-28 09:32:17 (497631): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-28 09:32:19 (497631): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-28 09:32:19 (497631): forwarding host port 48153 to guest port 80
2025-04-28 09:32:19 (497631): Enabling remote desktop for VM.
2025-04-28 09:32:20 (497631): Enabling shared directory for VM.
2025-04-28 09:32:20 (497631): Starting VM using VBoxManage interface. (boinc_1dc725378e4f76c6, slot#2)
2025-04-28 09:32:22 (497631): Successfully started VM. (PID = '498106')
2025-04-28 09:32:22 (497631): Reporting VM Process ID to BOINC.
2025-04-28 09:32:22 (497631): Guest Log: BIOS: VirtualBox 6.1.50
2025-04-28 09:32:22 (497631): Guest Log: CPUID EDX: 0x178bfbff
2025-04-28 09:32:22 (497631): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-28 09:32:22 (497631): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-28 09:32:22 (497631): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-28 09:32:22 (497631): Detected: Web Application Enabled (http://localhost:48153)
2025-04-28 09:32:22 (497631): Detected: Remote Desktop Enabled (localhost:51213)
2025-04-28 09:32:22 (497631): Preference change detected
2025-04-28 09:32:22 (497631): Setting CPU throttle for VM. (80%)
2025-04-28 09:32:22 (497631): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-28 09:32:24 (497631): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-28 09:32:24 (497631): Guest Log: BIOS: Booting from Hard Disk...
2025-04-28 09:32:27 (497631): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-28 09:32:27 (497631): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-28 09:32:27 (497631): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-28 09:32:44 (497631): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-28 09:32:44 (497631): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-28 09:33:03 (497631): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-28 09:33:03 (497631): Guest Log: 00:00:00.000580 main     Log opened 2025-04-28T09:33:01.162523000Z
2025-04-28 09:33:03 (497631): Guest Log: 00:00:00.001254 main     OS Product: Linux
2025-04-28 09:33:03 (497631): Guest Log: 00:00:00.001415 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-28 09:33:03 (497631): Guest Log: 00:00:00.001613 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-28 09:33:03 (497631): Guest Log: 00:00:00.001764 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-28 09:33:03 (497631): Guest Log: 00:00:00.001766 main     Process ID: 1279
2025-04-28 09:33:03 (497631): Guest Log: 00:00:00.001768 main     Package type: LINUX_64BITS_GENERIC
2025-04-28 09:33:03 (497631): Guest Log: 00:00:00.004361 main     5.2.32 r132073 started. Verbose level = 0
2025-04-28 09:33:04 (497631): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-28 09:33:04 (497631): Guest Log: [INFO] Mounting shared directory
2025-04-28 09:33:05 (497631): Guest Log: [INFO] Checking for init_data.xml
2025-04-28 09:33:07 (497631): VM state change detected. (old = 'running', new = 'paused')
2025-04-28 09:33:26 (497631): VM state change detected. (old = 'paused', new = 'running')
2025-04-28 09:34:02 (497631): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-28 09:34:02 (497631): Guest Log: [INFO] Detected branch: prod
2025-04-28 09:34:06 (497631): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-28 09:34:06 (497631): Guest Log: Copying input files
2025-04-28 09:34:08 (497631): Guest Log: Copied input files into RunAtlas.
2025-04-28 09:34:08 (497631): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-28 09:34:08 (497631): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-28 09:34:08 (497631): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-28 09:34:08 (497631): Guest Log: Further information can be found at the LHC@home message board.
2025-04-28 09:34:44 (497631): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-28 09:34:48 (497631): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-28 09:34:48 (497631): Guest Log: 2.6.3.0 1572 0 30196 145368 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-28 09:34:58 (497631): Guest Log: copied the webapp to /var/www
2025-04-28 09:34:58 (497631): Guest Log: ATHENA_PROC_NUMBER=3
2025-04-28 09:34:58 (497631): Guest Log: ATHENA_CORE_NUMBER=3
2025-04-28 09:35:02 (497631): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-28 09:35:02 (497631): Guest Log:  *** Starting ATLAS job. (PandaID=6618442650 taskID=44270688) ***
2025-04-28 09:52:34 (497631): VM state change detected. (old = 'running', new = 'paused')
2025-04-28 09:52:54 (497631): VM state change detected. (old = 'paused', new = 'running')
2025-04-28 11:12:06 (497631): Status Report: Elapsed Time: '6000.000000'
2025-04-28 11:12:06 (497631): Status Report: CPU Time: '11376.230000'
2025-04-28 12:13:56 (497631): VM state change detected. (old = 'running', new = 'paused')
2025-04-28 12:14:18 (497631): VM state change detected. (old = 'paused', new = 'running')
2025-04-28 12:51:30 (497631): Status Report: Elapsed Time: '12000.000000'
2025-04-28 12:51:30 (497631): Status Report: CPU Time: '25937.050000'
2025-04-28 14:30:32 (497631): Status Report: Elapsed Time: '18000.000000'
2025-04-28 14:30:32 (497631): Status Report: CPU Time: '40505.820000'
2025-04-28 16:09:33 (497631): Status Report: Elapsed Time: '24000.000000'
2025-04-28 16:09:33 (497631): Status Report: CPU Time: '55072.890000'
2025-04-28 17:48:35 (497631): Status Report: Elapsed Time: '30000.000000'
2025-04-28 17:48:35 (497631): Status Report: CPU Time: '69630.130000'
2025-04-28 19:27:37 (497631): Status Report: Elapsed Time: '36000.000000'
2025-04-28 19:27:37 (497631): Status Report: CPU Time: '84185.360000'
2025-04-28 21:06:38 (497631): Status Report: Elapsed Time: '42000.000000'
2025-04-28 21:06:38 (497631): Status Report: CPU Time: '98759.550000'
2025-04-28 22:45:40 (497631): Status Report: Elapsed Time: '48000.000000'
2025-04-28 22:45:40 (497631): Status Report: CPU Time: '113335.900000'
2025-04-29 00:15:06 (497631): VM state change detected. (old = 'running', new = 'paused')
2025-04-29 00:15:25 (497631): VM state change detected. (old = 'paused', new = 'running')
2025-04-29 00:20:21 (497631): Guest Log:  *** Job finished ***
2025-04-29 00:20:21 (497631): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:18:58,277 | INFO     | [payload] failed_post thread has finished
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:18:58,740 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:02,757 | INFO     | [data] queue_monitor thread has finished
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:04,920 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140229872617280)>', '<ExcThread(monitor, started 140229088352000)>']
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:05,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:05,940 | INFO     | [monitor] control thread has ended
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:09,929 | INFO     | all workflow threads have been joined
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:09,930 | INFO     | end of generic workflow (traces error code: 0)
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:09,931 | INFO     | traces error code: 0
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:09,933 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:10,478 [wrapper] ==== pilot stdout END ====
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:10,510 [wrapper] ==== wrapper stdout RESUME ====
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:10,540 [wrapper] pilotpid: 5930
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:10,568 [wrapper] Pilot exit status: 0
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:10,713 [wrapper] pandaids: 6618442650
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:10,865 [wrapper] cleanup supervisor_pilot  1258 5931
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:10,879 [wrapper] Test setup, not cleaning
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:10,895 [wrapper] apfmon messages muted
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:10,910 [wrapper] ==== wrapper stdout END ====
2025-04-29 00:20:21 (497631): Guest Log: 2025-04-29 00:19:10,924 [wrapper] ==== wrapper stderr END ====
2025-04-29 00:20:21 (497631): Guest Log:  *** Error codes and diagnostics ***
2025-04-29 00:20:21 (497631): Guest Log:     "exeErrorCode": 0,
2025-04-29 00:20:21 (497631): Guest Log:     "exeErrorDiag": "",
2025-04-29 00:20:21 (497631): Guest Log:     "pilotErrorCode": 0,
2025-04-29 00:20:21 (497631): Guest Log:     "pilotErrorDiag": "",
2025-04-29 00:20:21 (497631): Guest Log:  *** Listing of results directory ***
2025-04-29 00:20:21 (497631): Guest Log: total 221532
2025-04-29 00:20:21 (497631): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 28 05:53 pilot3.tar.gz
2025-04-29 00:20:21 (497631): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 28 06:19 runpilot2-wrapper.sh
2025-04-29 00:20:21 (497631): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 28 06:19 queuedata.json
2025-04-29 00:20:21 (497631): Guest Log: -rw-r--r--. 1 atlas atlas      6463 Apr 28 09:33 init_data.xml
2025-04-29 00:20:21 (497631): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Apr 28 09:33 start_atlas.sh
2025-04-29 00:20:21 (497631): Guest Log: -rw-r--r--. 1 atlas atlas    508850 Apr 28 09:33 input.tar.gz
2025-04-29 00:20:21 (497631): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 28 09:33 EVNT.44270686._000011.pool.root.1 -> /data/./ATLAS.root_0
2025-04-29 00:20:21 (497631): Guest Log: -rw-r--r--. 1 atlas atlas      2464 Apr 28 09:34 pandaJob.out
2025-04-29 00:20:21 (497631): Guest Log: -rw-------. 1 atlas atlas       424 Apr 28 09:34 setup.sh.local
2025-04-29 00:20:21 (497631): Guest Log: -rw-------. 1 atlas atlas    992198 Apr 28 09:37 agis_schedconf.cvmfs.json
2025-04-29 00:20:21 (497631): Guest Log: drwx------. 4 atlas atlas      4096 Apr 28 09:38 pilot3
2025-04-29 00:20:21 (497631): Guest Log: -rw-------. 1 atlas atlas 214085046 Apr 29 00:16 HITS.44270688._000271.pool.root.1
2025-04-29 00:20:21 (497631): Guest Log: -rw-------. 1 atlas atlas      1028 Apr 29 00:17 memory_monitor_summary.json
2025-04-29 00:20:21 (497631): Guest Log: -rw-------. 1 atlas atlas   1596659 Apr 29 00:17 agis_ddmendpoints.agis.ALL.json
2025-04-29 00:20:21 (497631): Guest Log: -rw-------. 1 atlas atlas    612073 Apr 29 00:17 log.44270688._000271.job.log.tgz.1
2025-04-29 00:20:21 (497631): Guest Log: -rw-------. 1 atlas atlas        96 Apr 29 00:18 pilot_heartbeat.json
2025-04-29 00:20:21 (497631): Guest Log: -rw-------. 1 atlas atlas      7713 Apr 29 00:18 heartbeat.json
2025-04-29 00:20:21 (497631): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 29 00:19 pilotlog.txt
2025-04-29 00:20:21 (497631): Guest Log: -rw-------. 1 atlas atlas   3881431 Apr 29 00:19 log.44270688._000271.job.log.1
2025-04-29 00:20:21 (497631): Guest Log: -rw-------. 1 atlas atlas       357 Apr 29 00:19 output.list
2025-04-29 00:20:21 (497631): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 29 00:19 runtime_log
2025-04-29 00:20:21 (497631): Guest Log: -rw-------. 1 atlas atlas   4515840 Apr 29 00:19 result.tar.gz
2025-04-29 00:20:21 (497631): Guest Log: -rw-r--r--. 1 atlas atlas     10942 Apr 29 00:19 runtime_log.err
2025-04-29 00:20:21 (497631): Guest Log: -rw-------. 1 atlas atlas       661 Apr 29 00:19 8gPMDmr0WT7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmiBuLDmXh1KMo.diag
2025-04-29 00:20:21 (497631): Guest Log: Looking for outputfile HITS.44270688._000271.pool.root.1
2025-04-29 00:20:21 (497631): Guest Log: HITS file was successfully produced
2025-04-29 00:20:21 (497631): Guest Log: -rw-------. 1 atlas atlas 214085046 Apr 29 00:16 /home/atlas/RunAtlas/HITS.44270688._000271.pool.root.1
2025-04-29 00:20:22 (497631): Guest Log: Successfully finished the ATLAS job!
2025-04-29 00:20:22 (497631): Guest Log: Copying the results back to the shared directory!
2025-04-29 00:20:22 (497631): Guest Log:  *** Contents of shared directory: ***
2025-04-29 00:20:22 (497631): Guest Log: total 215032
2025-04-29 00:20:22 (497631): Guest Log: -rw-r--r--. 1 root root 215127410 Apr 28 09:32 ATLAS.root_0
2025-04-29 00:20:22 (497631): Guest Log: -rw-r--r--. 1 root root      6463 Apr 28 09:32 init_data.xml
2025-04-29 00:20:22 (497631): Guest Log: -rw-r--r--. 1 root root    508850 Apr 28 09:32 input.tar.gz
2025-04-29 00:20:22 (497631): Guest Log: -rw-r--r--. 1 root root   4515840 Apr 29  2025 result.tar.gz
2025-04-29 00:20:22 (497631): Guest Log: -rw-r--r--. 1 root root     17569 Apr 28 09:32 start_atlas.sh
2025-04-29 00:20:22 (497631): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-29 00:20:22 (497631): VM Completion File Detected.
2025-04-29 00:20:22 (497631): Powering off VM.
2025-04-29 00:20:27 (497631): Successfully stopped VM.
2025-04-29 00:20:27 (497631): Deregistering VM. (boinc_1dc725378e4f76c6, slot#2)
2025-04-29 00:20:27 (497631): Removing network bandwidth throttle group from VM.
2025-04-29 00:20:27 (497631): Removing VM from VirtualBox.
00:20:34 (497631): called boinc_finish(0)

</stderr_txt>
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