Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:49:55 (27782): wrapper (7.7.26015): starting
04:49:55 (27782): wrapper: running run_atlas (--nthreads 8)
[2025-04-28 04:49:55] Arguments: --nthreads 8
[2025-04-28 04:49:55] Threads: 8
[2025-04-28 04:49:55] Checking for CVMFS
[2025-04-28 04:49:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-28 04:49:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-28 04:49:56] Running cvmfs_config stat atlas.cern.ch
[2025-04-28 04:49:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-28 04:49:57] 2.11.2.0 26290 52461 307184 145366 1 569 14724395 18432000 25100 130560 0 324887833 98.725 857499464 58763 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-28 04:49:57] CVMFS is ok
[2025-04-28 04:49:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-28 04:49:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-28 04:49:57] Further information can be found at the LHC@home message board.
[2025-04-28 04:49:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-28 04:49:57] Checking for apptainer binary...
[2025-04-28 04:49:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-28 04:49:57] Running /usr/bin/apptainer --version
[2025-04-28 04:49:57] apptainer version 1.3.2-1.el7
[2025-04-28 04:49:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-28 04:50:09] c-212-2.aglt2.org
[2025-04-28 04:50:09] apptainer works
[2025-04-28 04:50:09] Set ATHENA_PROC_NUMBER=8
[2025-04-28 04:50:09] Set ATHENA_CORE_NUMBER=8
[2025-04-28 04:50:09] Starting ATLAS job with PandaID=6618380877
[2025-04-28 04:50:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-28 05:49:03]  *** The last 200 lines of the pilot log: ***
[2025-04-28 05:49:03]     _, stdout, stderr = execute(cmd)
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 85, in execute
[2025-04-28 05:49:03]     process = subprocess.Popen(
[2025-04-28 05:49:03]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-04-28 05:49:03]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-04-28 05:49:03]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-04-28 05:49:03]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-04-28 05:49:03] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-04-28 05:49:03] 
[2025-04-28 05:49:03] None
[2025-04-28 05:49:03] exception has been put in bucket queue belonging to thread 'copytool_out'
[2025-04-28 05:49:03] setting graceful stop in 10 s since there is no point in continuing
[2025-04-28 05:49:03] 2025-04-28 09:46:19,676 | INFO     | monitor loop #186: job 0:6618380877 is in state 'failed'
[2025-04-28 05:49:03] 2025-04-28 09:46:19,677 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-28 05:49:03] 2025-04-28 09:46:20,297 | WARNING  | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-04-28 05:49:03] 2025-04-28 09:46:22,180 | INFO     | monitor loop #187: job 0:6618380877 is in state 'failed'
[2025-04-28 05:49:03] 2025-04-28 09:46:22,181 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-28 05:49:03] 2025-04-28 09:46:24,684 | INFO     | monitor loop #188: job 0:6618380877 is in state 'failed'
[2025-04-28 05:49:03] 2025-04-28 09:46:24,684 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-28 05:49:03] 2025-04-28 09:46:27,188 | INFO     | monitor loop #189: job 0:6618380877 is in state 'failed'
[2025-04-28 05:49:03] 2025-04-28 09:46:27,189 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-28 05:49:03] 2025-04-28 09:46:29,490 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-28 05:49:03] 2025-04-28 09:46:29,490 | WARNING  | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s
[2025-04-28 05:49:03] 2025-04-28 09:46:29,490 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-28 05:49:03] 2025-04-28 09:46:29,490 | INFO     | found 1 job(s) in 20 queues
[2025-04-28 05:49:03] 2025-04-28 09:46:29,490 | INFO     | aborting job 6618380877
[2025-04-28 05:49:03] 2025-04-28 09:46:29,491 | WARNING  | could not find signal name for signal number None - using SIGTERM
[2025-04-28 05:49:03] 2025-04-28 09:46:29,705 | INFO     | all payload control threads have been joined
[2025-04-28 05:49:03] 2025-04-28 09:46:29,706 | INFO     | monitor loop #190: job 0:6618380877 is in state 'failed'
[2025-04-28 05:49:03] 2025-04-28 09:46:29,706 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-28 05:49:03] 2025-04-28 09:46:29,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-28 05:49:03] 2025-04-28 09:46:29,706 | INFO     | will abort loop
[2025-04-28 05:49:03] 2025-04-28 09:46:29,743 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-28 05:49:03] 2025-04-28 09:46:29,744 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-28 05:49:03] 2025-04-28 09:46:29,933 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-28 05:49:03] 2025-04-28 09:46:30,074 | INFO     | all data control threads have been joined
[2025-04-28 05:49:03] 2025-04-28 09:46:30,388 | INFO     | all job control threads have been joined
[2025-04-28 05:49:03] 2025-04-28 09:46:30,541 | INFO     | [data] copytool_in thread has finished
[2025-04-28 05:49:03] 2025-04-28 09:46:30,711 | INFO     | [payload] control thread has finished
[2025-04-28 05:49:03] 2025-04-28 09:46:30,712 | INFO     | [job] job monitor thread has finished
[2025-04-28 05:49:03] 2025-04-28 09:46:30,954 | INFO     | [payload] validate_pre thread has finished
[2025-04-28 05:49:03] 2025-04-28 09:46:30,996 | INFO     | [job] create_data_payload thread has finished
[2025-04-28 05:49:03] 2025-04-28 09:46:31,080 | INFO     | [data] control thread has finished
[2025-04-28 05:49:03] 2025-04-28 09:46:31,375 | INFO     | [job] retrieve thread has finished
[2025-04-28 05:49:03] 2025-04-28 09:46:31,394 | INFO     | [job] control thread has finished
[2025-04-28 05:49:03] 2025-04-28 09:46:31,418 | INFO     | [payload] validate_post thread has finished
[2025-04-28 05:49:03] 2025-04-28 09:46:31,643 | INFO     | [payload] failed_post thread has finished
[2025-04-28 05:49:03] 2025-04-28 09:46:31,659 | INFO     | [job] validate thread has finished
[2025-04-28 05:49:03] 2025-04-28 09:46:31,896 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-28 05:49:03] 2025-04-28 09:46:33,944 | INFO     | [data] queue_monitor thread has finished
[2025-04-28 05:49:03] 2025-04-28 09:46:35,374 | INFO     | [payload] execute_payloads thread has finished
[2025-04-28 05:49:03] 2025-04-28 09:46:50,591 | INFO     | job 6618380877 has state=failed
[2025-04-28 05:49:03] 2025-04-28 09:46:50,592 | INFO     | preparing for final server update for job 6618380877 in state='failed'
[2025-04-28 05:49:03] 2025-04-28 09:46:50,865 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-28 05:49:03] 2025-04-28 09:46:50,866 | INFO     | [monitor] control thread has ended
[2025-04-28 05:49:03] 2025-04-28 09:46:52,157 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:46:54,167 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:46:56,178 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:46:58,190 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:00,202 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:02,214 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:04,224 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:06,235 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:08,246 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:10,258 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:12,269 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:14,280 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:16,291 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:18,303 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:20,313 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:22,324 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:24,335 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:26,346 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:28,357 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:30,368 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:32,380 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:34,391 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:36,398 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:38,408 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:40,419 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:42,430 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:44,440 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:46,451 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:48,462 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:50,473 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:52,474 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:54,486 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:56,497 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:47:58,509 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:00,521 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:02,533 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:04,545 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:06,556 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:08,568 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:10,578 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:12,585 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:14,597 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:16,610 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:18,620 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:20,632 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:22,644 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:24,655 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:26,666 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:28,678 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:30,690 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:32,701 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:34,713 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:36,725 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:38,736 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:40,747 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:42,760 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:44,771 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:45,751 | INFO     | proceeding with final server update
[2025-04-28 05:49:03] 2025-04-28 09:48:45,752 | INFO     | this job has now completed (state=failed)
[2025-04-28 05:49:03] 2025-04-28 09:48:45,752 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-28 05:49:03] 2025-04-28 09:48:45,752 | INFO     | log transfer has not been attempted: IN_PROGRESS
[2025-04-28 05:49:03] 2025-04-28 09:48:45,752 | INFO     | job 6618380877 has state 'failed' - writing heartbeat
[2025-04-28 05:49:03] 2025-04-28 09:48:45,753 | INFO     | payload/TRF did not report the number of read events
[2025-04-28 05:49:03] 2025-04-28 09:48:45,757 | INFO     | executing command: lscpu
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-04-28 05:49:03]     self._target(**self.kwargs)
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2651, in queue_monitor
[2025-04-28 05:49:03]     update_server(job, args)
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2700, in update_server
[2025-04-28 05:49:03]     send_state(job, args, job.state, metadata=metadata)
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 431, in send_state
[2025-04-28 05:49:03]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 758, in get_data_structure
[2025-04-28 05:49:03]     cpumodel, cpu_mhz = get_cpu_info(cpumodel)  # add the CPU cores if not present
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 368, in get_cpu_info
[2025-04-28 05:49:03]     ec, stdout = lscpu()
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 347, in lscpu
[2025-04-28 05:49:03]     ec, stdout, _ = execute(cmd)
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 85, in execute
[2025-04-28 05:49:03]     process = subprocess.Popen(
[2025-04-28 05:49:03]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-04-28 05:49:03]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-04-28 05:49:03]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-04-28 05:49:03]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-04-28 05:49:03] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f7f882fdcc0>)
[2025-04-28 05:49:03] Traceback (most recent call last):
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-04-28 05:49:03]     self._target(**self.kwargs)
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2651, in queue_monitor
[2025-04-28 05:49:03]     update_server(job, args)
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2700, in update_server
[2025-04-28 05:49:03]     send_state(job, args, job.state, metadata=metadata)
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 431, in send_state
[2025-04-28 05:49:03]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 758, in get_data_structure
[2025-04-28 05:49:03]     cpumodel, cpu_mhz = get_cpu_info(cpumodel)  # add the CPU cores if not present
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 368, in get_cpu_info
[2025-04-28 05:49:03]     ec, stdout = lscpu()
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 347, in lscpu
[2025-04-28 05:49:03]     ec, stdout, _ = execute(cmd)
[2025-04-28 05:49:03]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 85, in execute
[2025-04-28 05:49:03]     process = subprocess.Popen(
[2025-04-28 05:49:03]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-04-28 05:49:03]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-04-28 05:49:03]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-04-28 05:49:03]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-04-28 05:49:03] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-04-28 05:49:03] 
[2025-04-28 05:49:03] None
[2025-04-28 05:49:03] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-04-28 05:49:03] setting graceful stop in 10 s since there is no point in continuing
[2025-04-28 05:49:03] 2025-04-28 09:48:46,783 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:48,795 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:50,811 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:52,823 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:54,833 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140185888339776)>', '<ExcThread(queue_monitor, started 140185299834624)>']
[2025-04-28 05:49:03] 2025-04-28 09:48:56,844 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140185888339776)>'])
[2025-04-28 05:49:03] 2025-04-28 09:49:01,870 | INFO     | all workflow threads have been joined
[2025-04-28 05:49:03] 2025-04-28 09:49:01,871 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-28 05:49:03] 2025-04-28 09:49:01,871 | INFO     | traces error code: 0
[2025-04-28 05:49:03] 2025-04-28 09:49:01,871 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-28 05:49:03] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-28 05:49:03]  ==== pilot stdout END ====
[2025-04-28 05:49:03] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-28 05:49:03]  ==== wrapper stdout RESUME ====
[2025-04-28 05:49:03] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-28 05:49:03]  pilotpid: 70054
[2025-04-28 05:49:03] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-28 05:49:03]  Pilot exit status: 0
[2025-04-28 05:49:03] ./runpilot2-wrapper.sh: line 1045: /usr/bin/cut: Transport endpoint is not connected
[2025-04-28 05:49:03] ./runpilot2-wrapper.sh: line 1045: xargs: command not found
[2025-04-28 05:49:03] ./runpilot2-wrapper.sh: line 1045: /usr/bin/cat: Transport endpoint is not connected
[2025-04-28 05:49:03] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-28 05:49:03]  pandaids: 
[2025-04-28 05:49:03] ./runpilot2-wrapper.sh: line 546: /usr/bin/ps: Transport endpoint is not connected
[2025-04-28 05:49:03] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-28 05:49:03]  No supervise_pilot CHILD process found
[2025-04-28 05:49:03] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-28 05:49:03]  Test setup, not cleaning
[2025-04-28 05:49:03] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-28 05:49:03]  apfmon messages muted
[2025-04-28 05:49:03] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-28 05:49:03]  ==== wrapper stdout END ====
[2025-04-28 05:49:03] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2025-04-28 05:49:03]  ==== wrapper stderr END ====
[2025-04-28 05:49:03]  *** Error codes and diagnostics ***
[2025-04-28 05:49:03]  *** Listing of results directory ***
[2025-04-28 05:49:03] total 226100
[2025-04-28 05:49:03] -rw-r--r-- 1 boincer umatlas    495897 Apr 28 01:53 pilot3.tar.gz
[2025-04-28 05:49:03] -rw-r--r-- 1 boincer umatlas      5111 Apr 28 02:07 queuedata.json
[2025-04-28 05:49:03] -rwx------ 1 boincer umatlas     37140 Apr 28 02:07 runpilot2-wrapper.sh
[2025-04-28 05:49:03] -rw-r--r-- 1 boincer umatlas       100 Apr 28 04:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-28 05:49:03] -rwxr-xr-x 1 boincer umatlas      7986 Apr 28 04:49 run_atlas
[2025-04-28 05:49:03] -rw-r--r-- 1 boincer umatlas       105 Apr 28 04:49 job.xml
[2025-04-28 05:49:03] -rw-r--r-- 2 boincer umatlas 227207994 Apr 28 04:49 EVNT.44292255._003153.pool.root.1
[2025-04-28 05:49:03] -rw-r--r-- 2 boincer umatlas     17569 Apr 28 04:49 start_atlas.sh
[2025-04-28 05:49:03] drwxrwx--x 2 boincer umatlas      4096 Apr 28 04:49 shared
[2025-04-28 05:49:03] -rw-r--r-- 2 boincer umatlas    508880 Apr 28 04:49 input.tar.gz
[2025-04-28 05:49:03] -rw-r--r-- 1 boincer umatlas         0 Apr 28 04:49 boinc_lockfile
[2025-04-28 05:49:03] -rw-r--r-- 1 boincer umatlas      2551 Apr 28 04:50 pandaJob.out
[2025-04-28 05:49:03] -rw------- 1 boincer umatlas       467 Apr 28 04:50 setup.sh.local
[2025-04-28 05:49:03] -rw------- 1 boincer umatlas    992174 Apr 28 04:51 agis_schedconf.cvmfs.json
[2025-04-28 05:49:03] -rw------- 1 boincer umatlas   1596659 Apr 28 04:52 agis_ddmendpoints.agis.ALL.json
[2025-04-28 05:49:03] drwx------ 4 boincer umatlas      4096 Apr 28 04:52 pilot3
[2025-04-28 05:49:03] -rw------- 1 boincer umatlas       900 Apr 28 05:30 heartbeat.json
[2025-04-28 05:49:03] -rw------- 1 boincer umatlas        95 Apr 28 05:46 pilot_heartbeat.json
[2025-04-28 05:49:03] -rw-r--r-- 1 boincer umatlas       528 Apr 28 05:46 boinc_task_state.xml
[2025-04-28 05:49:03] -rw------- 1 boincer umatlas      1074 Apr 28 05:46 memory_monitor_summary.json
[2025-04-28 05:49:03] drwxrwx--- 2 boincer umatlas      4096 Apr 28 05:46 PanDA_Pilot-6618380877
[2025-04-28 05:49:03] -rw-r--r-- 1 boincer umatlas      6386 Apr 28 05:48 init_data.xml
[2025-04-28 05:49:03] -rw------- 1 boincer umatlas    243700 Apr 28 05:49 pilotlog.txt
[2025-04-28 05:49:03] -rw------- 1 boincer umatlas    265962 Apr 28 05:49 log.44292257._029326.job.log.1
[2025-04-28 05:49:03] -rw-r--r-- 1 boincer umatlas       428 Apr 28 05:49 runtime_log
[2025-04-28 05:49:03] -rw------- 1 boincer umatlas       636 Apr 28 05:49 8UNODmxpWT7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmQAuLDmOSe2Oo.diag
[2025-04-28 05:49:03] -rw-r--r-- 1 boincer umatlas        26 Apr 28 05:49 wrapper_checkpoint.txt
[2025-04-28 05:49:03] -rw-r--r-- 1 boincer umatlas      8192 Apr 28 05:49 boinc_mmap_file
[2025-04-28 05:49:03] -rw-r--r-- 1 boincer umatlas     11706 Apr 28 05:49 runtime_log.err
[2025-04-28 05:49:03] -rw-r--r-- 1 boincer umatlas     28174 Apr 28 05:49 stderr.txt
[2025-04-28 05:49:03] No HITS result produced
[2025-04-28 05:49:03]  *** Contents of shared directory: ***
[2025-04-28 05:49:03] total 222404
[2025-04-28 05:49:03] -rw-r--r-- 2 boincer umatlas 227207994 Apr 28 04:49 ATLAS.root_0
[2025-04-28 05:49:03] -rw-r--r-- 2 boincer umatlas     17569 Apr 28 04:49 start_atlas.sh
[2025-04-28 05:49:03] -rw-r--r-- 2 boincer umatlas    508880 Apr 28 04:49 input.tar.gz
05:49:04 (27782): run_atlas exited; CPU time 4412.630955
05:49:04 (27782): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>8UNODmxpWT7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmQAuLDmOSe2Oo_0_r1521589103_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>

</message>
]]>

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