Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-28 11:23:39 (962941): Detected: vboxwrapper 26206
2025-04-28 11:23:39 (962941): Detected: BOINC client v8.2.2
2025-04-28 11:23:39 (962941): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-04-28 11:23:39 (962941): Successfully copied 'init_data.xml' to the shared directory.
2025-04-28 11:23:39 (962941): Create VM. (boinc_e7a49795c8a2508b, slot#1)
2025-04-28 11:23:39 (962941): Setting Memory Size for VM. (4300MB)
2025-04-28 11:23:39 (962941): Setting CPU Count for VM. (3)
2025-04-28 11:23:39 (962941): Setting Chipset Options for VM.
2025-04-28 11:23:39 (962941): Setting Graphics Controller Options for VM.
2025-04-28 11:23:39 (962941): Setting Boot Options for VM.
2025-04-28 11:23:39 (962941): Setting Network Configuration for NAT.
2025-04-28 11:23:39 (962941): Enabling VM Network Access.
2025-04-28 11:23:39 (962941): Disabling USB Support for VM.
2025-04-28 11:23:39 (962941): Disabling COM Port Support for VM.
2025-04-28 11:23:39 (962941): Disabling LPT Port Support for VM.
2025-04-28 11:23:39 (962941): Disabling Audio Support for VM.
2025-04-28 11:23:39 (962941): Disabling Clipboard Support for VM.
2025-04-28 11:23:39 (962941): Disabling Drag and Drop Support for VM.
2025-04-28 11:23:40 (962941): Adding storage controller(s) to VM.
2025-04-28 11:23:40 (962941): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-28 11:23:41 (962941): Adding VirtualBox Guest Additions to VM.
2025-04-28 11:23:41 (962941): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-28 11:23:41 (962941): forwarding host port 49965 to guest port 80
2025-04-28 11:23:41 (962941): Enabling remote desktop for VM.
2025-04-28 11:23:41 (962941): Required extension pack not installed, remote desktop not enabled.
2025-04-28 11:23:41 (962941): Enabling shared directory for VM.
2025-04-28 11:23:41 (962941): Starting VM using VBoxManage interface. (boinc_e7a49795c8a2508b, slot#1)
2025-04-28 11:23:42 (962941): Successfully started VM. (PID = '963507')
2025-04-28 11:23:42 (962941): Reporting VM Process ID to BOINC.
2025-04-28 11:23:42 (962941): Guest Log: BIOS: VirtualBox 7.1.8
2025-04-28 11:23:42 (962941): Guest Log: CPUID EDX: 0x178bfbff
2025-04-28 11:23:42 (962941): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-28 11:23:42 (962941): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-28 11:23:42 (962941): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-28 11:23:42 (962941): Detected: Web Application Enabled (http://localhost:49965)
2025-04-28 11:23:42 (962941): Preference change detected
2025-04-28 11:23:42 (962941): Setting CPU throttle for VM. (100%)
2025-04-28 11:23:43 (962941): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 30 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-28 11:23:44 (962941): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-28 11:23:44 (962941): Guest Log: BIOS: Booting from Hard Disk...
2025-04-28 11:23:47 (962941): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-28 11:23:47 (962941): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-28 11:23:47 (962941): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-28 11:23:51 (962941): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-28 11:23:51 (962941): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-28 11:23:57 (962941): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-28 11:23:57 (962941): Guest Log: 00:00:00.000099 main     Log opened 2025-04-28T09:23:55.092649000Z
2025-04-28 11:23:57 (962941): Guest Log: 00:00:00.000174 main     OS Product: Linux
2025-04-28 11:23:57 (962941): Guest Log: 00:00:00.000186 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-28 11:23:57 (962941): Guest Log: 00:00:00.000194 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-28 11:23:57 (962941): Guest Log: 00:00:00.000204 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-28 11:23:57 (962941): Guest Log: 00:00:00.000204 main     Process ID: 1291
2025-04-28 11:23:57 (962941): Guest Log: 00:00:00.000204 main     Package type: LINUX_64BITS_GENERIC
2025-04-28 11:23:57 (962941): Guest Log: 00:00:00.000739 main     5.2.32 r132073 started. Verbose level = 0
2025-04-28 11:23:57 (962941): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-28 11:23:57 (962941): Guest Log: [INFO] Mounting shared directory
2025-04-28 11:23:57 (962941): Guest Log: [INFO] Checking for init_data.xml
2025-04-28 11:24:06 (962941): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-28 11:24:06 (962941): Guest Log: [INFO] Detected branch: prod
2025-04-28 11:24:06 (962941): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-28 11:24:06 (962941): Guest Log: Copying input files
2025-04-28 11:24:06 (962941): Guest Log: Copied input files into RunAtlas.
2025-04-28 11:24:07 (962941): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-28 11:24:07 (962941): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-28 11:24:07 (962941): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-28 11:24:07 (962941): Guest Log: Further information can be found at the LHC@home message board.
2025-04-28 11:24:14 (962941): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-28 11:24:14 (962941): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-28 11:24:14 (962941): Guest Log: 2.6.3.0 1585 0 32216 145368 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-28 11:24:15 (962941): Guest Log: copied the webapp to /var/www
2025-04-28 11:24:15 (962941): Guest Log: ATHENA_PROC_NUMBER=3
2025-04-28 11:24:15 (962941): Guest Log: ATHENA_CORE_NUMBER=3
2025-04-28 11:24:16 (962941): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-28 11:24:16 (962941): Guest Log:  *** Starting ATLAS job. (PandaID=6617824405 taskID=44292257) ***
2025-04-28 13:02:43 (962941): Status Report: Elapsed Time: '6000.000000'
2025-04-28 13:02:43 (962941): Status Report: CPU Time: '15411.960000'
2025-04-28 14:17:36 (962941): Guest Log:  *** Job finished ***
2025-04-28 14:17:36 (962941): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:20,202 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:21,204 | INFO     | [job] queue monitor thread has finished
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:22,792 | INFO     | [data] queue_monitor thread has finished
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:23,715 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139740439697216)>', '<ExcThread(monitor, started 139740133168896)>']
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:24,608 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:24,609 | INFO     | [monitor] control thread has ended
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:28,725 | INFO     | all workflow threads have been joined
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:28,725 | INFO     | end of generic workflow (traces error code: 0)
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:28,726 | INFO     | traces error code: 0
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:28,726 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:28,843 [wrapper] ==== pilot stdout END ====
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:28,849 [wrapper] ==== wrapper stdout RESUME ====
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:28,856 [wrapper] pilotpid: 5881
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:28,862 [wrapper] Pilot exit status: 0
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:28,992 [wrapper] pandaids: 6617824405
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:29,044 [wrapper] cleanup supervisor_pilot 10372 5882
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:29,050 [wrapper] Test setup, not cleaning
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:29,054 [wrapper] apfmon messages muted
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:29,059 [wrapper] ==== wrapper stdout END ====
2025-04-28 14:17:36 (962941): Guest Log: 2025-04-28 12:17:29,065 [wrapper] ==== wrapper stderr END ====
2025-04-28 14:17:36 (962941): Guest Log:  *** Error codes and diagnostics ***
2025-04-28 14:17:36 (962941): Guest Log:     "exeErrorCode": 0,
2025-04-28 14:17:36 (962941): Guest Log:     "exeErrorDiag": "",
2025-04-28 14:17:36 (962941): Guest Log:     "pilotErrorCode": 0,
2025-04-28 14:17:36 (962941): Guest Log:     "pilotErrorDiag": "",
2025-04-28 14:17:36 (962941): Guest Log:  *** Listing of results directory ***
2025-04-28 14:17:36 (962941): Guest Log: total 203028
2025-04-28 14:17:36 (962941): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 27 21:42 pilot3.tar.gz
2025-04-28 14:17:36 (962941): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 27 21:47 queuedata.json
2025-04-28 14:17:36 (962941): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 27 21:48 runpilot2-wrapper.sh
2025-04-28 14:17:36 (962941): Guest Log: -rw-r--r--. 1 atlas atlas    508887 Apr 28 09:24 input.tar.gz
2025-04-28 14:17:36 (962941): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Apr 28 09:24 start_atlas.sh
2025-04-28 14:17:36 (962941): Guest Log: -rw-r--r--. 1 atlas atlas      8942 Apr 28 09:24 init_data.xml
2025-04-28 14:17:36 (962941): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 28 09:24 EVNT.44292255._002972.pool.root.1 -> /data/./ATLAS.root_0
2025-04-28 14:17:36 (962941): Guest Log: -rw-r--r--. 1 atlas atlas      2551 Apr 28 09:24 pandaJob.out
2025-04-28 14:17:36 (962941): Guest Log: -rw-------. 1 atlas atlas       424 Apr 28 09:24 setup.sh.local
2025-04-28 14:17:36 (962941): Guest Log: -rw-------. 1 atlas atlas    992198 Apr 28 09:24 agis_schedconf.cvmfs.json
2025-04-28 14:17:36 (962941): Guest Log: -rw-------. 1 atlas atlas   1596659 Apr 28 09:24 agis_ddmendpoints.agis.ALL.json
2025-04-28 14:17:36 (962941): Guest Log: drwx------. 4 atlas atlas      4096 Apr 28 09:24 pilot3
2025-04-28 14:17:36 (962941): Guest Log: -rw-------. 1 atlas atlas 201689583 Apr 28 12:16 HITS.44292257._024592.pool.root.1
2025-04-28 14:17:36 (962941): Guest Log: -rw-------. 1 atlas atlas      1026 Apr 28 12:16 memory_monitor_summary.json
2025-04-28 14:17:36 (962941): Guest Log: -rw-------. 1 atlas atlas    298289 Apr 28 12:17 log.44292257._024592.job.log.tgz.1
2025-04-28 14:17:36 (962941): Guest Log: -rw-------. 1 atlas atlas        95 Apr 28 12:17 pilot_heartbeat.json
2025-04-28 14:17:36 (962941): Guest Log: -rw-------. 1 atlas atlas      7674 Apr 28 12:17 heartbeat.json
2025-04-28 14:17:36 (962941): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 28 12:17 pilotlog.txt
2025-04-28 14:17:36 (962941): Guest Log: -rw-------. 1 atlas atlas    918380 Apr 28 12:17 log.44292257._024592.job.log.1
2025-04-28 14:17:36 (962941): Guest Log: -rw-------. 1 atlas atlas       357 Apr 28 12:17 output.list
2025-04-28 14:17:36 (962941): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 28 12:17 runtime_log
2025-04-28 14:17:36 (962941): Guest Log: -rw-------. 1 atlas atlas   1239040 Apr 28 12:17 result.tar.gz
2025-04-28 14:17:36 (962941): Guest Log: -rw-r--r--. 1 atlas atlas     10950 Apr 28 12:17 runtime_log.err
2025-04-28 14:17:36 (962941): Guest Log: -rw-------. 1 atlas atlas       662 Apr 28 12:17 GXaMDmf2OT7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmUGtLDmkIalMm.diag
2025-04-28 14:17:36 (962941): Guest Log: Looking for outputfile HITS.44292257._024592.pool.root.1
2025-04-28 14:17:36 (962941): Guest Log: HITS file was successfully produced
2025-04-28 14:17:36 (962941): Guest Log: -rw-------. 1 atlas atlas 201689583 Apr 28 12:16 /home/atlas/RunAtlas/HITS.44292257._024592.pool.root.1
2025-04-28 14:17:36 (962941): Guest Log: Successfully finished the ATLAS job!
2025-04-28 14:17:36 (962941): Guest Log: Copying the results back to the shared directory!
2025-04-28 14:17:36 (962941): Guest Log:  *** Contents of shared directory: ***
2025-04-28 14:17:36 (962941): Guest Log: total 219596
2025-04-28 14:17:36 (962941): Guest Log: -rw-r--r--. 1 root root 223077220 Apr 28 09:23 ATLAS.root_0
2025-04-28 14:17:36 (962941): Guest Log: -rw-r--r--. 1 root root      8942 Apr 28 09:23 init_data.xml
2025-04-28 14:17:36 (962941): Guest Log: -rw-r--r--. 1 root root    508887 Apr 28 09:23 input.tar.gz
2025-04-28 14:17:36 (962941): Guest Log: -rw-r--r--. 1 root root   1239040 Apr 28  2025 result.tar.gz
2025-04-28 14:17:36 (962941): Guest Log: -rw-r--r--. 1 root root     17569 Apr 28 09:23 start_atlas.sh
2025-04-28 14:17:36 (962941): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-28 14:17:36 (962941): VM Completion File Detected.
2025-04-28 14:17:36 (962941): Powering off VM.
2025-04-28 14:17:36 (962941): Successfully stopped VM.
2025-04-28 14:17:36 (962941): Deregistering VM. (boinc_e7a49795c8a2508b, slot#1)
2025-04-28 14:17:36 (962941): Removing network bandwidth throttle group from VM.
2025-04-28 14:17:36 (962941): Removing VM from VirtualBox.
14:17:41 (962941): called boinc_finish(0)

</stderr_txt>
]]>

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