Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
15:14:28 (1371017): wrapper (7.7.26015): starting
15:14:28 (1371017): wrapper: running run_atlas (--nthreads 12)
[2025-04-29 15:14:28] Arguments: --nthreads 12
[2025-04-29 15:14:28] Threads: 12
[2025-04-29 15:14:28] Checking for CVMFS
[2025-04-29 15:14:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-29 15:14:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-29 15:14:28] Running cvmfs_config stat atlas.cern.ch
[2025-04-29 15:14:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-29 15:14:28] 2.12.7.0 1341750 92 44956 145415 0 56 2691146 4096001 0 130560 0 66073 99.997 1253 33 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-04-29 15:14:28] CVMFS is ok
[2025-04-29 15:14:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-29 15:14:29] Small home clusters do not require a local http proxy but it is suggested if
[2025-04-29 15:14:29] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-04-29 15:14:29] Further information can be found at the LHC@home message board.
[2025-04-29 15:14:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-29 15:14:29] Checking for apptainer binary...
[2025-04-29 15:14:29] apptainer is not installed, using version from CVMFS
[2025-04-29 15:14:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-29 15:14:29] ws24
[2025-04-29 15:14:29] apptainer works
[2025-04-29 15:14:29] Set ATHENA_PROC_NUMBER=12
[2025-04-29 15:14:29] Set ATHENA_CORE_NUMBER=12
[2025-04-29 15:14:29] Starting ATLAS job with PandaID=6617685101
[2025-04-29 15:14:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-29 16:44:12]  *** The last 200 lines of the pilot log: ***
[2025-04-29 16:44:12]  is_altstaged=None
[2025-04-29 16:44:12]  is_tar=False
[2025-04-29 16:44:12]  lfn=log.44292257._019971.job.log.tgz.1
[2025-04-29 16:44:12]  mtime=0
[2025-04-29 16:44:12]  protocol_id=None
[2025-04-29 16:44:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-29 16:44:12]  replicas=None
[2025-04-29 16:44:12]  scope=mc23_13p6TeV
[2025-04-29 16:44:12]  status=None
[2025-04-29 16:44:12]  status_code=0
[2025-04-29 16:44:12]  storage_token=
[2025-04-29 16:44:12]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6617685101/log.44292257._019971.job.log.tgz.1
[2025-04-29 16:44:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b8/99/log.44292257._019971.job.log.tgz.1
[2025-04-29 16:44:12]  workdir=None
[2025-04-29 16:44:12] ]
[2025-04-29 16:44:12] 2025-04-29 14:43:42,724 | INFO     | transferring file log.44292257._019971.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6617685101/log.44292257._019971.job.log.tgz.1 to /var/lib/boinc
[2025-04-29 16:44:12] 2025-04-29 14:43:42,724 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6617685101/log.44292257._019971.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.442922
[2025-04-29 16:44:12] 2025-04-29 14:43:42,743 | INFO     | adding to output.list: log.44292257._019971.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b8/99/log.44292257._019971.job.log.tg
[2025-04-29 16:44:12] 2025-04-29 14:43:42,744 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-29 16:44:12] 2025-04-29 14:43:42,744 | INFO     | summary of transferred files:
[2025-04-29 16:44:12] 2025-04-29 14:43:42,744 | INFO     |  -- lfn=log.44292257._019971.job.log.tgz.1, status_code=0, status=transferred
[2025-04-29 16:44:12] 2025-04-29 14:43:42,744 | INFO     | stage-out finished correctly
[2025-04-29 16:44:12] 2025-04-29 14:43:42,806 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-29 16:44:12] 2025-04-29 14:43:42,898 | INFO     | job 6617685101 has state=finished
[2025-04-29 16:44:12] 2025-04-29 14:43:42,898 | INFO     | preparing for final server update for job 6617685101 in state='finished'
[2025-04-29 16:44:12] 2025-04-29 14:43:42,898 | INFO     | this job has now completed (state=finished)
[2025-04-29 16:44:12] 2025-04-29 14:43:42,898 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-29 16:44:12] 2025-04-29 14:43:42,898 | INFO     | log transfer has been attempted: DONE
[2025-04-29 16:44:12] 2025-04-29 14:43:42,898 | INFO     | job 6617685101 has finished - writing final server update
[2025-04-29 16:44:12] 2025-04-29 14:43:42,899 | INFO     | total number of processed events: 400 (read)
[2025-04-29 16:44:12] 2025-04-29 14:43:42,900 | INFO     | executing command: lscpu
[2025-04-29 16:44:12] 2025-04-29 14:43:42,929 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-29 16:44:12] 2025-04-29 14:43:44,564 | INFO     | monitor loop #400: job 0:6617685101 is in state 'finished'
[2025-04-29 16:44:12] 2025-04-29 14:43:44,564 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-29 16:44:12] 2025-04-29 14:43:47,067 | INFO     | monitor loop #401: job 0:6617685101 is in state 'finished'
[2025-04-29 16:44:12] 2025-04-29 14:43:47,067 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-29 16:44:12] 2025-04-29 14:43:49,570 | INFO     | monitor loop #402: job 0:6617685101 is in state 'finished'
[2025-04-29 16:44:12] 2025-04-29 14:43:49,570 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-29 16:44:12] 2025-04-29 14:43:51,328 | INFO     | PID=1374707 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-29 16:44:12] 2025-04-29 14:43:51,714 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-29 16:44:12] 2025-04-29 14:43:51,714 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6617685101/memory_monitor_summary.json (trf name=prmon)
[2025-04-29 16:44:12] 2025-04-29 14:43:51,715 | INFO     | extracted standard info from prmon json
[2025-04-29 16:44:12] 2025-04-29 14:43:51,715 | INFO     | extracted standard memory fields from prmon json
[2025-04-29 16:44:12] 2025-04-29 14:43:51,715 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-29 16:44:12] 2025-04-29 14:43:51,715 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-29 16:44:12] 2025-04-29 14:43:51,715 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-29 16:44:12] 2025-04-29 14:43:51,716 | INFO     | fitting pss+swap vs Time
[2025-04-29 16:44:12] 2025-04-29 14:43:51,717 | INFO     | sum of square deviations: 158737860.0
[2025-04-29 16:44:12] 2025-04-29 14:43:51,717 | INFO     | sum of deviations: 23362955775.0
[2025-04-29 16:44:12] 2025-04-29 14:43:51,717 | INFO     | mean x: 1745935245.5
[2025-04-29 16:44:12] 2025-04-29 14:43:51,717 | INFO     | mean y: 2605784.35
[2025-04-29 16:44:12] 2025-04-29 14:43:51,717 | INFO     | -- intersect: -256963236684.67578
[2025-04-29 16:44:12] 2025-04-29 14:43:51,717 | INFO     | intersect: -256963236684.67578
[2025-04-29 16:44:12] 2025-04-29 14:43:51,717 | INFO     | chi2: 2.3831845898412047
[2025-04-29 16:44:12] 2025-04-29 14:43:51,717 | INFO     | -- intersect: -256963236684.67578
[2025-04-29 16:44:12] 2025-04-29 14:43:51,717 | INFO     | current memory leak: 147.18 B/s (using 80 data points, chi2=2.38)
[2025-04-29 16:44:12] 2025-04-29 14:43:51,717 | INFO     | ..............................
[2025-04-29 16:44:12] 2025-04-29 14:43:51,718 | INFO     | . Timing measurements:
[2025-04-29 16:44:12] 2025-04-29 14:43:51,718 | INFO     | . get job = 0 s
[2025-04-29 16:44:12] 2025-04-29 14:43:51,718 | INFO     | . initial setup = 3 s
[2025-04-29 16:44:12] 2025-04-29 14:43:51,718 | INFO     | . payload setup = 13 s
[2025-04-29 16:44:12] 2025-04-29 14:43:51,718 | INFO     | . stage-in = 0 s
[2025-04-29 16:44:12] 2025-04-29 14:43:51,718 | INFO     | . payload execution = 5292 s
[2025-04-29 16:44:12] 2025-04-29 14:43:51,718 | INFO     | . stage-out = 0 s
[2025-04-29 16:44:12] 2025-04-29 14:43:51,718 | INFO     | . log creation = 0 s
[2025-04-29 16:44:12] 2025-04-29 14:43:51,718 | INFO     | ..............................
[2025-04-29 16:44:12] 2025-04-29 14:43:52,057 | INFO     | 
[2025-04-29 16:44:12] 2025-04-29 14:43:52,057 | INFO     | job summary report
[2025-04-29 16:44:12] 2025-04-29 14:43:52,057 | INFO     | --------------------------------------------------
[2025-04-29 16:44:12] 2025-04-29 14:43:52,057 | INFO     | PanDA job id: 6617685101
[2025-04-29 16:44:12] 2025-04-29 14:43:52,057 | INFO     | task id: 44292257
[2025-04-29 16:44:12] 2025-04-29 14:43:52,057 | INFO     | errors: (none)
[2025-04-29 16:44:12] 2025-04-29 14:43:52,057 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-29 16:44:12] 2025-04-29 14:43:52,058 | INFO     | pilot state: finished 
[2025-04-29 16:44:12] 2025-04-29 14:43:52,058 | INFO     | transexitcode: 0
[2025-04-29 16:44:12] 2025-04-29 14:43:52,058 | INFO     | exeerrorcode: 0
[2025-04-29 16:44:12] 2025-04-29 14:43:52,058 | INFO     | exeerrordiag: 
[2025-04-29 16:44:12] 2025-04-29 14:43:52,058 | INFO     | exitcode: 0
[2025-04-29 16:44:12] 2025-04-29 14:43:52,058 | INFO     | exitmsg: OK
[2025-04-29 16:44:12] 2025-04-29 14:43:52,058 | INFO     | cpuconsumptiontime: 46130 s
[2025-04-29 16:44:12] 2025-04-29 14:43:52,058 | INFO     | nevents: 400
[2025-04-29 16:44:12] 2025-04-29 14:43:52,058 | INFO     | neventsw: 0
[2025-04-29 16:44:12] 2025-04-29 14:43:52,058 | INFO     | pid: 1381255
[2025-04-29 16:44:12] 2025-04-29 14:43:52,058 | INFO     | pgrp: 1381255
[2025-04-29 16:44:12] 2025-04-29 14:43:52,058 | INFO     | corecount: 12
[2025-04-29 16:44:12] 2025-04-29 14:43:52,058 | INFO     | event service: False
[2025-04-29 16:44:12] 2025-04-29 14:43:52,058 | INFO     | sizes: {0: 2392903, 1: 2393766, 2: 2393766, 10: 2394000, 12: 2394028, 5309: 2420592, 5310: 2429603, 5319: 2429717}
[2025-04-29 16:44:12] 2025-04-29 14:43:52,058 | INFO     | --------------------------------------------------
[2025-04-29 16:44:12] 2025-04-29 14:43:52,058 | INFO     | 
[2025-04-29 16:44:12] 2025-04-29 14:43:52,059 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-04-29 16:44:12] 2025-04-29 14:43:52,079 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,080 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,080 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,080 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,080 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,080 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,080 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,081 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,081 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,081 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,081 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,081 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,081 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,081 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,081 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,082 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,082 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,082 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-29 16:44:12] 2025-04-29 14:43:52,082 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,082 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-29 16:44:12] 2025-04-29 14:43:52,082 | INFO     | job 6617685101 has completed (purged errors)
[2025-04-29 16:44:12] 2025-04-29 14:43:52,082 | INFO     | overall cleanup function is called
[2025-04-29 16:44:12] 2025-04-29 14:43:53,093 | INFO     | --- collectZombieJob: --- 10, [1381255]
[2025-04-29 16:44:12] 2025-04-29 14:43:53,093 | INFO     | zombie collector waiting for pid 1381255
[2025-04-29 16:44:12] 2025-04-29 14:43:53,093 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-29 16:44:12] 2025-04-29 14:43:53,094 | INFO     | collected zombie processes
[2025-04-29 16:44:12] 2025-04-29 14:43:53,094 | INFO     | will attempt to kill all subprocesses of pid=1381255
[2025-04-29 16:44:12] 2025-04-29 14:43:53,232 | INFO     | process IDs to be killed: [1381255] (in reverse order)
[2025-04-29 16:44:12] 2025-04-29 14:43:53,294 | WARNING  | found no corresponding commands to process id(s)
[2025-04-29 16:44:12] 2025-04-29 14:43:53,294 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-29 16:44:12] 2025-04-29 14:43:53,299 | INFO     | did not find any defunct processes belonging to 1381255
[2025-04-29 16:44:12] 2025-04-29 14:43:53,303 | INFO     | did not find any defunct processes belonging to 1381255
[2025-04-29 16:44:12] 2025-04-29 14:43:53,303 | INFO     | ready for new job
[2025-04-29 16:44:12] 2025-04-29 14:43:53,303 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-29 16:44:12] 2025-04-29 14:43:53,304 | INFO     | **************************************
[2025-04-29 16:44:12] 2025-04-29 14:43:53,305 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-29 16:44:12] 2025-04-29 14:43:53,305 | INFO     | **************************************
[2025-04-29 16:44:12] 2025-04-29 14:43:53,305 | INFO     | 
[2025-04-29 16:44:12] 2025-04-29 14:43:53,305 | INFO     | architecture information:
[2025-04-29 16:44:12] 2025-04-29 14:43:53,306 | INFO     | executing command: cat /etc/os-release
[2025-04-29 16:44:12] 2025-04-29 14:43:53,321 | INFO     | cat /etc/os-release:
[2025-04-29 16:44:12] NAME="CentOS Linux"
[2025-04-29 16:44:12] VERSION="7 (Core)"
[2025-04-29 16:44:12] ID="centos"
[2025-04-29 16:44:12] ID_LIKE="rhel fedora"
[2025-04-29 16:44:12] VERSION_ID="7"
[2025-04-29 16:44:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-29 16:44:12] ANSI_COLOR="0;31"
[2025-04-29 16:44:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-29 16:44:12] HOME_URL="https://www.centos.org/"
[2025-04-29 16:44:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-29 16:44:12] 
[2025-04-29 16:44:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-29 16:44:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-29 16:44:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-29 16:44:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-29 16:44:12] 
[2025-04-29 16:44:12] 2025-04-29 14:43:53,321 | INFO     | **************************************
[2025-04-29 16:44:12] 2025-04-29 14:43:53,824 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-04-29 16:44:12] 2025-04-29 14:43:53,842 | INFO     | sufficient remaining disk space (50697601024 B)
[2025-04-29 16:44:12] 2025-04-29 14:43:53,842 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-29 16:44:12] 2025-04-29 14:43:53,842 | INFO     | current server update state: UPDATING_FINAL
[2025-04-29 16:44:12] 2025-04-29 14:43:53,842 | INFO     | update_server=False
[2025-04-29 16:44:12] 2025-04-29 14:43:53,842 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-29 16:44:12] 2025-04-29 14:43:53,843 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-29 16:44:12] 2025-04-29 14:43:53,843 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-29 16:44:12] 2025-04-29 14:43:53,843 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-29 16:44:12] 2025-04-29 14:43:53,843 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-29 16:44:12] 2025-04-29 14:43:53,844 | INFO     | found 0 job(s) in 20 queues
[2025-04-29 16:44:12] 2025-04-29 14:43:53,844 | INFO     | aborting loop
[2025-04-29 16:44:12] 2025-04-29 14:43:53,844 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-29 16:44:12] 2025-04-29 14:43:53,844 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-29 16:44:12] 2025-04-29 14:43:54,192 | INFO     | all payload control threads have been joined
[2025-04-29 16:44:12] 2025-04-29 14:43:54,355 | INFO     | all job control threads have been joined
[2025-04-29 16:44:12] 2025-04-29 14:43:54,782 | INFO     | all data control threads have been joined
[2025-04-29 16:44:12] 2025-04-29 14:43:54,847 | INFO     | [job] retrieve thread has finished
[2025-04-29 16:44:12] 2025-04-29 14:43:54,849 | INFO     | [job] job monitor thread has finished
[2025-04-29 16:44:12] 2025-04-29 14:43:54,913 | INFO     | [payload] execute_payloads thread has finished
[2025-04-29 16:44:12] 2025-04-29 14:43:54,989 | INFO     | [job] create_data_payload thread has finished
[2025-04-29 16:44:12] 2025-04-29 14:43:55,082 | INFO     | [payload] validate_pre thread has finished
[2025-04-29 16:44:12] 2025-04-29 14:43:55,198 | INFO     | [payload] control thread has finished
[2025-04-29 16:44:12] 2025-04-29 14:43:55,273 | INFO     | [payload] failed_post thread has finished
[2025-04-29 16:44:12] 2025-04-29 14:43:55,360 | INFO     | [job] control thread has finished
[2025-04-29 16:44:12] 2025-04-29 14:43:55,581 | INFO     | [data] copytool_in thread has finished
[2025-04-29 16:44:12] 2025-04-29 14:43:55,787 | INFO     | [data] control thread has finished
[2025-04-29 16:44:12] 2025-04-29 14:43:55,847 | INFO     | [data] copytool_out thread has finished
[2025-04-29 16:44:12] 2025-04-29 14:43:55,979 | INFO     | [payload] validate_post thread has finished
[2025-04-29 16:44:12] 2025-04-29 14:43:56,176 | INFO     | [job] validate thread has finished
[2025-04-29 16:44:12] 2025-04-29 14:43:56,792 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-29 16:44:12] 2025-04-29 14:43:57,797 | INFO     | [job] queue monitor thread has finished
[2025-04-29 16:44:12] 2025-04-29 14:43:57,850 | INFO     | [data] queue_monitor thread has finished
[2025-04-29 16:44:12] 2025-04-29 14:44:04,405 | INFO     | job.realtimelogging is not enabled
[2025-04-29 16:44:12] 2025-04-29 14:44:05,410 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-29 16:44:12] 2025-04-29 14:44:07,442 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123445393610560)>', '<ExcThread(monitor, started 123444867884800)>']
[2025-04-29 16:44:12] 2025-04-29 14:44:07,907 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-29 16:44:12] 2025-04-29 14:44:07,907 | INFO     | [monitor] control thread has ended
[2025-04-29 16:44:12] 2025-04-29 14:44:12,463 | INFO     | all workflow threads have been joined
[2025-04-29 16:44:12] 2025-04-29 14:44:12,463 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-29 16:44:12] 2025-04-29 14:44:12,464 | INFO     | traces error code: 0
[2025-04-29 16:44:12] 2025-04-29 14:44:12,464 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-29 16:44:12] 2025-04-29 14:44:12,563 [wrapper] ==== pilot stdout END ====
[2025-04-29 16:44:12] 2025-04-29 14:44:12,565 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-29 16:44:12] 2025-04-29 14:44:12,568 [wrapper] pilotpid: 1374707
[2025-04-29 16:44:12] 2025-04-29 14:44:12,571 [wrapper] Pilot exit status: 0
[2025-04-29 16:44:12] 2025-04-29 14:44:12,579 [wrapper] pandaids: 6617685101
[2025-04-29 16:44:12] 2025-04-29 14:44:12,611 [wrapper] cleanup supervisor_pilot 1395484 1374708
[2025-04-29 16:44:12] 2025-04-29 14:44:12,614 [wrapper] Test setup, not cleaning
[2025-04-29 16:44:12] 2025-04-29 14:44:12,618 [wrapper] apfmon messages muted
[2025-04-29 16:44:12] 2025-04-29 14:44:12,622 [wrapper] ==== wrapper stdout END ====
[2025-04-29 16:44:12] 2025-04-29 14:44:12,626 [wrapper] ==== wrapper stderr END ====
[2025-04-29 16:44:12]  *** Error codes and diagnostics ***
[2025-04-29 16:44:12]     "exeErrorCode": 0,
[2025-04-29 16:44:12]     "exeErrorDiag": "",
[2025-04-29 16:44:12]     "pilotErrorCode": 0,
[2025-04-29 16:44:12]     "pilotErrorDiag": "",
[2025-04-29 16:44:12]  *** Listing of results directory ***
[2025-04-29 16:44:12] total 418308
[2025-04-29 16:44:12] -rw-r--r-- 1 boinc boinc    495897 Apr 27 13:53 pilot3.tar.gz
[2025-04-29 16:44:12] -rwx------ 1 boinc boinc     37140 Apr 27 14:21 runpilot2-wrapper.sh
[2025-04-29 16:44:12] -rw-r--r-- 1 boinc boinc      5111 Apr 27 14:21 queuedata.json
[2025-04-29 16:44:12] -rw-r--r-- 1 boinc boinc       100 Apr 29 15:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-29 16:44:12] -rwxr-xr-x 1 boinc boinc      7986 Apr 29 15:14 run_atlas
[2025-04-29 16:44:12] -rw-r--r-- 1 boinc boinc       105 Apr 29 15:14 job.xml
[2025-04-29 16:44:12] -rw-r--r-- 1 boinc boinc      9495 Apr 29 15:14 init_data.xml
[2025-04-29 16:44:12] -rw-r--r-- 2 boinc boinc 224300308 Apr 29 15:14 EVNT.44292255._002789.pool.root.1
[2025-04-29 16:44:12] drwxrwx--x 2 boinc boinc      4096 Apr 29 15:14 shared
[2025-04-29 16:44:12] -rw-r--r-- 2 boinc boinc    508885 Apr 29 15:14 input.tar.gz
[2025-04-29 16:44:12] -rw-r--r-- 2 boinc boinc     17569 Apr 29 15:14 start_atlas.sh
[2025-04-29 16:44:12] -rw-r--r-- 1 boinc boinc         0 Apr 29 15:14 boinc_lockfile
[2025-04-29 16:44:12] -rw-r--r-- 1 boinc boinc      2551 Apr 29 15:14 pandaJob.out
[2025-04-29 16:44:12] -rw------- 1 boinc boinc       424 Apr 29 15:14 setup.sh.local
[2025-04-29 16:44:12] -rw------- 1 boinc boinc    995519 Apr 29 15:14 agis_schedconf.cvmfs.json
[2025-04-29 16:44:12] -rw------- 1 boinc boinc   1596659 Apr 29 15:14 agis_ddmendpoints.agis.ALL.json
[2025-04-29 16:44:12] drwx------ 4 boinc boinc      4096 Apr 29 15:14 pilot3
[2025-04-29 16:44:12] -rw------- 1 boinc boinc 198455206 Apr 29 16:43 HITS.44292257._019971.pool.root.1
[2025-04-29 16:44:12] -rw------- 1 boinc boinc        95 Apr 29 16:43 pilot_heartbeat.json
[2025-04-29 16:44:12] -rw-r--r-- 1 boinc boinc       530 Apr 29 16:43 boinc_task_state.xml
[2025-04-29 16:44:12] -rw------- 1 boinc boinc      1015 Apr 29 16:43 memory_monitor_summary.json
[2025-04-29 16:44:12] -rw------- 1 boinc boinc    358844 Apr 29 16:43 log.44292257._019971.job.log.tgz.1
[2025-04-29 16:44:12] -rw------- 1 boinc boinc      7647 Apr 29 16:43 heartbeat.json
[2025-04-29 16:44:12] -rw-r--r-- 1 boinc boinc      8192 Apr 29 16:43 boinc_mmap_file
[2025-04-29 16:44:12] -rw-r--r-- 1 boinc boinc        27 Apr 29 16:43 wrapper_checkpoint.txt
[2025-04-29 16:44:12] -rw------- 1 boinc boinc      4555 Apr 29 16:44 pilotlog.txt
[2025-04-29 16:44:12] -rw------- 1 boinc boinc    509373 Apr 29 16:44 log.44292257._019971.job.log.1
[2025-04-29 16:44:12] -rw------- 1 boinc boinc       357 Apr 29 16:44 output.list
[2025-04-29 16:44:12] -rw-r--r-- 1 boinc boinc       620 Apr 29 16:44 runtime_log
[2025-04-29 16:44:12] -rw------- 1 boinc boinc    890880 Apr 29 16:44 result.tar.gz
[2025-04-29 16:44:12] -rw------- 1 boinc boinc       637 Apr 29 16:44 gTHNDm5BGT7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmOiBLDms1TVRm.diag
[2025-04-29 16:44:12] -rw-r--r-- 1 boinc boinc     11068 Apr 29 16:44 runtime_log.err
[2025-04-29 16:44:12] -rw-r--r-- 1 boinc boinc     21606 Apr 29 16:44 stderr.txt
[2025-04-29 16:44:12] HITS file was successfully produced:
[2025-04-29 16:44:12] -rw------- 1 boinc boinc 198455206 Apr 29 16:43 shared/HITS.pool.root.1
[2025-04-29 16:44:12]  *** Contents of shared directory: ***
[2025-04-29 16:44:12] total 414248
[2025-04-29 16:44:12] -rw-r--r-- 2 boinc boinc 224300308 Apr 29 15:14 ATLAS.root_0
[2025-04-29 16:44:12] -rw-r--r-- 2 boinc boinc    508885 Apr 29 15:14 input.tar.gz
[2025-04-29 16:44:12] -rw-r--r-- 2 boinc boinc     17569 Apr 29 15:14 start_atlas.sh
[2025-04-29 16:44:12] -rw------- 1 boinc boinc 198455206 Apr 29 16:43 HITS.pool.root.1
[2025-04-29 16:44:12] -rw------- 1 boinc boinc    890880 Apr 29 16:44 result.tar.gz
16:44:13 (1371017): run_atlas exited; CPU time 46082.855622
16:44:13 (1371017): called boinc_finish(0)

</stderr_txt>
]]>

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