Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
22:12:35 (2598650): wrapper (7.7.26015): starting
22:12:35 (2598650): wrapper: running run_atlas (--nthreads 4)
[2025-04-27 22:12:35] Arguments: --nthreads 4
[2025-04-27 22:12:35] Threads: 4
[2025-04-27 22:12:35] Checking for CVMFS
[2025-04-27 22:12:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-27 22:12:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-27 22:12:35] Running cvmfs_config stat atlas.cern.ch
[2025-04-27 22:12:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-27 22:12:37] 2.12.7.0 2497 3261 74680 145348 1 56 9168151 10240001 1820 130560 0 6906828 99.996 837413 504 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2025-04-27 22:12:37] CVMFS is ok
[2025-04-27 22:12:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-27 22:12:37] Checking for apptainer binary...
[2025-04-27 22:12:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-27 22:12:37] Running /usr/bin/apptainer --version
[2025-04-27 22:12:37] apptainer version 1.3.4
[2025-04-27 22:12:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-27 22:12:37] ellievl
[2025-04-27 22:12:37] apptainer works
[2025-04-27 22:12:37] Set ATHENA_PROC_NUMBER=4
[2025-04-27 22:12:37] Set ATHENA_CORE_NUMBER=4
[2025-04-27 22:12:37] Starting ATLAS job with PandaID=6617686257
[2025-04-27 22:12:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-27 23:48:33]  *** The last 200 lines of the pilot log: ***
[2025-04-27 23:48:33]  is_tar=False
[2025-04-27 23:48:33]  lfn=log.44292257._020368.job.log.tgz.1
[2025-04-27 23:48:33]  mtime=0
[2025-04-27 23:48:33]  protocol_id=None
[2025-04-27 23:48:33]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-27 23:48:33]  replicas=None
[2025-04-27 23:48:33]  scope=mc23_13p6TeV
[2025-04-27 23:48:33]  status=None
[2025-04-27 23:48:33]  status_code=0
[2025-04-27 23:48:33]  storage_token=
[2025-04-27 23:48:33]  surl=/var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6617686257/log.44292257._020368.job.log.tgz.1
[2025-04-27 23:48:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/2f/log.44292257._020368.job.log.tgz.1
[2025-04-27 23:48:33]  workdir=None
[2025-04-27 23:48:33] ]
[2025-04-27 23:48:33] 2025-04-27 21:48:08,964 | INFO     | transferring file log.44292257._020368.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6617686257/log.44292257._020368.job.log.tgz.1 to /var/li
[2025-04-27 23:48:33] 2025-04-27 21:48:08,964 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6617686257/log.44292257._020368.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2025-04-27 23:48:33] 2025-04-27 21:48:08,979 | INFO     | adding to output.list: log.44292257._020368.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/2f/log.44292257._020368.job.log.tg
[2025-04-27 23:48:33] 2025-04-27 21:48:08,980 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-27 23:48:33] 2025-04-27 21:48:08,980 | INFO     | summary of transferred files:
[2025-04-27 23:48:33] 2025-04-27 21:48:08,980 | INFO     |  -- lfn=log.44292257._020368.job.log.tgz.1, status_code=0, status=transferred
[2025-04-27 23:48:33] 2025-04-27 21:48:08,980 | INFO     | stage-out finished correctly
[2025-04-27 23:48:33] 2025-04-27 21:48:09,443 | INFO     | monitor loop #428: job 0:6617686257 is in state 'finished'
[2025-04-27 23:48:33] 2025-04-27 21:48:09,443 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-27 23:48:33] 2025-04-27 21:48:11,113 | INFO     | PID=2603266 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-27 23:48:33] 2025-04-27 21:48:11,113 | INFO     | .. there are 3 such processes running
[2025-04-27 23:48:33] 2025-04-27 21:48:11,437 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-27 23:48:33] 2025-04-27 21:48:11,568 | INFO     | job 6617686257 has state=finished
[2025-04-27 23:48:33] 2025-04-27 21:48:11,568 | INFO     | preparing for final server update for job 6617686257 in state='finished'
[2025-04-27 23:48:33] 2025-04-27 21:48:11,568 | INFO     | this job has now completed (state=finished)
[2025-04-27 23:48:33] 2025-04-27 21:48:11,568 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-27 23:48:33] 2025-04-27 21:48:11,569 | INFO     | log transfer has been attempted: DONE
[2025-04-27 23:48:33] 2025-04-27 21:48:11,569 | INFO     | job 6617686257 has finished - writing final server update
[2025-04-27 23:48:33] 2025-04-27 21:48:11,569 | INFO     | total number of processed events: 400 (read)
[2025-04-27 23:48:33] 2025-04-27 21:48:11,570 | INFO     | executing command: lscpu
[2025-04-27 23:48:33] 2025-04-27 21:48:11,591 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-27 23:48:33] 2025-04-27 21:48:11,952 | INFO     | monitor loop #429: job 0:6617686257 is in state 'finished'
[2025-04-27 23:48:33] 2025-04-27 21:48:11,953 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-27 23:48:33] 2025-04-27 21:48:14,395 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-27 23:48:33] 2025-04-27 21:48:14,395 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6617686257/memory_monitor_summary.json (trf name=prmon)
[2025-04-27 23:48:33] 2025-04-27 21:48:14,396 | INFO     | extracted standard info from prmon json
[2025-04-27 23:48:33] 2025-04-27 21:48:14,396 | INFO     | extracted standard memory fields from prmon json
[2025-04-27 23:48:33] 2025-04-27 21:48:14,396 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-27 23:48:33] 2025-04-27 21:48:14,396 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-27 23:48:33] 2025-04-27 21:48:14,397 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-27 23:48:33] 2025-04-27 21:48:14,398 | INFO     | fitting pss+swap vs Time
[2025-04-27 23:48:33] 2025-04-27 21:48:14,398 | INFO     | sum of square deviations: 204163828.0
[2025-04-27 23:48:33] 2025-04-27 21:48:14,399 | INFO     | sum of deviations: -2165576677.0
[2025-04-27 23:48:33] 2025-04-27 21:48:14,399 | INFO     | mean x: 1745787714.0
[2025-04-27 23:48:33] 2025-04-27 21:48:14,399 | INFO     | mean y: 2348327.8735632184
[2025-04-27 23:48:33] 2025-04-27 21:48:14,399 | INFO     | -- intersect: 18520012271.907497
[2025-04-27 23:48:33] 2025-04-27 21:48:14,399 | INFO     | intersect: 18520012271.907497
[2025-04-27 23:48:33] 2025-04-27 21:48:14,399 | INFO     | chi2: 0.0040380609407396195
[2025-04-27 23:48:33] 2025-04-27 21:48:14,399 | INFO     | -- intersect: 18520012271.907497
[2025-04-27 23:48:33] 2025-04-27 21:48:14,399 | INFO     | current memory leak: -10.61 B/s (using 87 data points, chi2=0.00)
[2025-04-27 23:48:33] 2025-04-27 21:48:14,399 | INFO     | ..............................
[2025-04-27 23:48:33] 2025-04-27 21:48:14,399 | INFO     | . Timing measurements:
[2025-04-27 23:48:33] 2025-04-27 21:48:14,399 | INFO     | . get job = 0 s
[2025-04-27 23:48:33] 2025-04-27 21:48:14,399 | INFO     | . initial setup = 1 s
[2025-04-27 23:48:33] 2025-04-27 21:48:14,399 | INFO     | . payload setup = 4 s
[2025-04-27 23:48:33] 2025-04-27 21:48:14,399 | INFO     | . stage-in = 0 s
[2025-04-27 23:48:33] 2025-04-27 21:48:14,399 | INFO     | . payload execution = 5702 s
[2025-04-27 23:48:33] 2025-04-27 21:48:14,400 | INFO     | . stage-out = 0 s
[2025-04-27 23:48:33] 2025-04-27 21:48:14,400 | INFO     | . log creation = 0 s
[2025-04-27 23:48:33] 2025-04-27 21:48:14,400 | INFO     | ..............................
[2025-04-27 23:48:33] 2025-04-27 21:48:14,824 | INFO     | 
[2025-04-27 23:48:33] 2025-04-27 21:48:14,824 | INFO     | job summary report
[2025-04-27 23:48:33] 2025-04-27 21:48:14,824 | INFO     | --------------------------------------------------
[2025-04-27 23:48:33] 2025-04-27 21:48:14,824 | INFO     | PanDA job id: 6617686257
[2025-04-27 23:48:33] 2025-04-27 21:48:14,824 | INFO     | task id: 44292257
[2025-04-27 23:48:33] 2025-04-27 21:48:14,824 | INFO     | errors: (none)
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | pilot state: finished 
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | transexitcode: 0
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | exeerrorcode: 0
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | exeerrordiag: 
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | exitcode: 0
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | exitmsg: OK
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | cpuconsumptiontime: 21485 s
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | nevents: 400
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | neventsw: 0
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | pid: 2611053
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | pgrp: 2611053
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | corecount: 4
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | event service: False
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | sizes: {0: 2393692, 3: 2393898, 11: 2393926, 5709: 2420528, 5710: 2429497, 5713: 2429553, 5716: 2429851}
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | --------------------------------------------------
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | 
[2025-04-27 23:48:33] 2025-04-27 21:48:14,825 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/2
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-27 23:48:33] 2025-04-27 21:48:14,841 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,842 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-27 23:48:33] 2025-04-27 21:48:14,842 | INFO     | job 6617686257 has completed (purged errors)
[2025-04-27 23:48:33] 2025-04-27 21:48:14,842 | INFO     | overall cleanup function is called
[2025-04-27 23:48:33] 2025-04-27 21:48:15,849 | INFO     | --- collectZombieJob: --- 10, [2611053]
[2025-04-27 23:48:33] 2025-04-27 21:48:15,849 | INFO     | zombie collector waiting for pid 2611053
[2025-04-27 23:48:33] 2025-04-27 21:48:15,849 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-27 23:48:33] 2025-04-27 21:48:15,849 | INFO     | collected zombie processes
[2025-04-27 23:48:33] 2025-04-27 21:48:15,849 | INFO     | will attempt to kill all subprocesses of pid=2611053
[2025-04-27 23:48:33] 2025-04-27 21:48:15,950 | INFO     | process IDs to be killed: [2611053] (in reverse order)
[2025-04-27 23:48:33] 2025-04-27 21:48:15,988 | WARNING  | found no corresponding commands to process id(s)
[2025-04-27 23:48:33] 2025-04-27 21:48:15,988 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-27 23:48:33] 2025-04-27 21:48:15,991 | INFO     | did not find any defunct processes belonging to 2611053
[2025-04-27 23:48:33] 2025-04-27 21:48:15,993 | INFO     | did not find any defunct processes belonging to 2611053
[2025-04-27 23:48:33] 2025-04-27 21:48:15,993 | INFO     | ready for new job
[2025-04-27 23:48:33] 2025-04-27 21:48:15,993 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-27 23:48:33] 2025-04-27 21:48:15,994 | INFO     | **************************************
[2025-04-27 23:48:33] 2025-04-27 21:48:15,994 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-27 23:48:33] 2025-04-27 21:48:15,994 | INFO     | **************************************
[2025-04-27 23:48:33] 2025-04-27 21:48:15,994 | INFO     | 
[2025-04-27 23:48:33] 2025-04-27 21:48:15,995 | INFO     | pilot is running in a VM
[2025-04-27 23:48:33] 2025-04-27 21:48:15,995 | INFO     | architecture information:
[2025-04-27 23:48:33] 2025-04-27 21:48:15,995 | INFO     | executing command: cat /etc/os-release
[2025-04-27 23:48:33] 2025-04-27 21:48:16,004 | INFO     | cat /etc/os-release:
[2025-04-27 23:48:33] NAME="CentOS Linux"
[2025-04-27 23:48:33] VERSION="7 (Core)"
[2025-04-27 23:48:33] ID="centos"
[2025-04-27 23:48:33] ID_LIKE="rhel fedora"
[2025-04-27 23:48:33] VERSION_ID="7"
[2025-04-27 23:48:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-27 23:48:33] ANSI_COLOR="0;31"
[2025-04-27 23:48:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-27 23:48:33] HOME_URL="https://www.centos.org/"
[2025-04-27 23:48:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-27 23:48:33] 
[2025-04-27 23:48:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-27 23:48:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-27 23:48:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-27 23:48:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-27 23:48:33] 
[2025-04-27 23:48:33] 2025-04-27 21:48:16,004 | INFO     | **************************************
[2025-04-27 23:48:33] 2025-04-27 21:48:16,507 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/2
[2025-04-27 23:48:33] 2025-04-27 21:48:16,519 | INFO     | sufficient remaining disk space (22517121024 B)
[2025-04-27 23:48:33] 2025-04-27 21:48:16,519 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-27 23:48:33] 2025-04-27 21:48:16,519 | INFO     | current server update state: UPDATING_FINAL
[2025-04-27 23:48:33] 2025-04-27 21:48:16,519 | INFO     | update_server=False
[2025-04-27 23:48:33] 2025-04-27 21:48:16,519 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-27 23:48:33] 2025-04-27 21:48:16,926 | INFO     | all payload control threads have been joined
[2025-04-27 23:48:33] 2025-04-27 21:48:16,959 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-27 23:48:33] 2025-04-27 21:48:16,960 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-27 23:48:33] 2025-04-27 21:48:16,960 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-27 23:48:33] 2025-04-27 21:48:16,960 | INFO     | will abort loop
[2025-04-27 23:48:33] 2025-04-27 21:48:17,034 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-27 23:48:33] 2025-04-27 21:48:17,130 | INFO     | found 0 job(s) in 20 queues
[2025-04-27 23:48:33] 2025-04-27 21:48:17,130 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-27 23:48:33] 2025-04-27 21:48:17,130 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-27 23:48:33] 2025-04-27 21:48:17,163 | INFO     | all data control threads have been joined
[2025-04-27 23:48:33] 2025-04-27 21:48:17,289 | INFO     | all job control threads have been joined
[2025-04-27 23:48:33] 2025-04-27 21:48:17,483 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-27 23:48:33] 2025-04-27 21:48:17,525 | INFO     | [job] retrieve thread has finished
[2025-04-27 23:48:33] 2025-04-27 21:48:17,815 | INFO     | [payload] execute_payloads thread has finished
[2025-04-27 23:48:33] 2025-04-27 21:48:17,932 | INFO     | [payload] control thread has finished
[2025-04-27 23:48:33] 2025-04-27 21:48:17,965 | INFO     | [job] job monitor thread has finished
[2025-04-27 23:48:33] 2025-04-27 21:48:18,168 | INFO     | [data] control thread has finished
[2025-04-27 23:48:33] 2025-04-27 21:48:18,295 | INFO     | [job] control thread has finished
[2025-04-27 23:48:33] 2025-04-27 21:48:18,450 | INFO     | [payload] validate_post thread has finished
[2025-04-27 23:48:33] 2025-04-27 21:48:18,679 | INFO     | [payload] failed_post thread has finished
[2025-04-27 23:48:33] 2025-04-27 21:48:18,896 | INFO     | [job] validate thread has finished
[2025-04-27 23:48:33] 2025-04-27 21:48:18,934 | INFO     | [job] create_data_payload thread has finished
[2025-04-27 23:48:33] 2025-04-27 21:48:18,955 | INFO     | [data] copytool_in thread has finished
[2025-04-27 23:48:33] 2025-04-27 21:48:19,019 | INFO     | [payload] validate_pre thread has finished
[2025-04-27 23:48:33] 2025-04-27 21:48:19,039 | INFO     | [data] copytool_out thread has finished
[2025-04-27 23:48:33] 2025-04-27 21:48:19,447 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-27 23:48:33] 2025-04-27 21:48:20,453 | INFO     | [job] queue monitor thread has finished
[2025-04-27 23:48:33] 2025-04-27 21:48:21,487 | INFO     | [data] queue_monitor thread has finished
[2025-04-27 23:48:33] 2025-04-27 21:48:26,748 | INFO     | job.realtimelogging is not enabled
[2025-04-27 23:48:33] 2025-04-27 21:48:27,754 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-27 23:48:33] 2025-04-27 21:48:28,211 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125712233224000)>', '<ExcThread(monitor, started 125711645935360)>']
[2025-04-27 23:48:33] 2025-04-27 21:48:29,190 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-27 23:48:33] 2025-04-27 21:48:29,190 | INFO     | [monitor] control thread has ended
[2025-04-27 23:48:33] 2025-04-27 21:48:33,237 | INFO     | all workflow threads have been joined
[2025-04-27 23:48:33] 2025-04-27 21:48:33,237 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-27 23:48:33] 2025-04-27 21:48:33,237 | INFO     | traces error code: 0
[2025-04-27 23:48:33] 2025-04-27 21:48:33,237 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-27 23:48:33] 2025-04-27 21:48:33,300 [wrapper] ==== pilot stdout END ====
[2025-04-27 23:48:33] 2025-04-27 21:48:33,303 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-27 23:48:33] 2025-04-27 21:48:33,305 [wrapper] pilotpid: 2603266
[2025-04-27 23:48:33] 2025-04-27 21:48:33,307 [wrapper] Pilot exit status: 0
[2025-04-27 23:48:33] 2025-04-27 21:48:33,316 [wrapper] pandaids: 6617686257
[2025-04-27 23:48:33] 2025-04-27 21:48:33,341 [wrapper] cleanup supervisor_pilot 2673371 2603267
[2025-04-27 23:48:33] 2025-04-27 21:48:33,344 [wrapper] Test setup, not cleaning
[2025-04-27 23:48:33] 2025-04-27 21:48:33,346 [wrapper] apfmon messages muted
[2025-04-27 23:48:33] 2025-04-27 21:48:33,349 [wrapper] ==== wrapper stdout END ====
[2025-04-27 23:48:33] 2025-04-27 21:48:33,351 [wrapper] ==== wrapper stderr END ====
[2025-04-27 23:48:33]  *** Error codes and diagnostics ***
[2025-04-27 23:48:33]     "exeErrorCode": 0,
[2025-04-27 23:48:33]     "exeErrorDiag": "",
[2025-04-27 23:48:33]     "pilotErrorCode": 0,
[2025-04-27 23:48:33]     "pilotErrorDiag": "",
[2025-04-27 23:48:33]  *** Listing of results directory ***
[2025-04-27 23:48:33] insgesamt 412856
[2025-04-27 23:48:33] -rw-r--r-- 1 yeti boinc    495897 Apr 27 15:01 pilot3.tar.gz
[2025-04-27 23:48:33] -rw-r--r-- 1 yeti boinc      5111 Apr 27 15:09 queuedata.json
[2025-04-27 23:48:33] -rwx------ 1 yeti boinc     37140 Apr 27 15:10 runpilot2-wrapper.sh
[2025-04-27 23:48:33] -rw-r--r-- 1 yeti boinc       100 Apr 27 22:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-27 23:48:33] -rwxr-xr-x 1 yeti boinc      7986 Apr 27 22:12 run_atlas
[2025-04-27 23:48:33] -rw-r--r-- 1 yeti boinc       105 Apr 27 22:12 job.xml
[2025-04-27 23:48:33] -rw-r--r-- 1 yeti boinc      6705 Apr 27 22:12 init_data.xml
[2025-04-27 23:48:33] -rw-r--r-- 2 yeti boinc 222964629 Apr 27 22:12 EVNT.44292255._002805.pool.root.1
[2025-04-27 23:48:33] -rw-r--r-- 2 yeti boinc     17569 Apr 27 22:12 start_atlas.sh
[2025-04-27 23:48:33] drwxrwx--x 2 yeti boinc      4096 Apr 27 22:12 shared
[2025-04-27 23:48:33] -rw-r--r-- 2 yeti boinc    508879 Apr 27 22:12 input.tar.gz
[2025-04-27 23:48:33] -rw-r--r-- 1 yeti boinc         0 Apr 27 22:12 boinc_lockfile
[2025-04-27 23:48:33] -rw-r--r-- 1 yeti boinc      2549 Apr 27 22:12 pandaJob.out
[2025-04-27 23:48:33] -rw------- 1 yeti boinc       462 Apr 27 22:12 setup.sh.local
[2025-04-27 23:48:33] -rw------- 1 yeti boinc    992879 Apr 27 22:12 agis_schedconf.cvmfs.json
[2025-04-27 23:48:33] -rw------- 1 yeti boinc   1596659 Apr 27 22:12 agis_ddmendpoints.agis.ALL.json
[2025-04-27 23:48:33] drwx------ 4 yeti boinc      4096 Apr 27 22:12 pilot3
[2025-04-27 23:48:33] -rw------- 1 yeti boinc        95 Apr 27 23:47 pilot_heartbeat.json
[2025-04-27 23:48:33] -rw------- 1 yeti boinc 194334926 Apr 27 23:47 HITS.44292257._020368.pool.root.1
[2025-04-27 23:48:33] -rw-r--r-- 1 yeti boinc       529 Apr 27 23:47 boinc_task_state.xml
[2025-04-27 23:48:33] -rw------- 1 yeti boinc      1018 Apr 27 23:48 memory_monitor_summary.json
[2025-04-27 23:48:33] -rw------- 1 yeti boinc    239465 Apr 27 23:48 log.44292257._020368.job.log.tgz.1
[2025-04-27 23:48:33] -rw------- 1 yeti boinc      7644 Apr 27 23:48 heartbeat.json
[2025-04-27 23:48:33] -rw-r--r-- 1 yeti boinc      8192 Apr 27 23:48 boinc_mmap_file
[2025-04-27 23:48:33] -rw-r--r-- 1 yeti boinc        27 Apr 27 23:48 wrapper_checkpoint.txt
[2025-04-27 23:48:33] -rw------- 1 yeti boinc      4687 Apr 27 23:48 pilotlog.txt
[2025-04-27 23:48:33] -rw------- 1 yeti boinc    567241 Apr 27 23:48 log.44292257._020368.job.log.1
[2025-04-27 23:48:33] -rw------- 1 yeti boinc       357 Apr 27 23:48 output.list
[2025-04-27 23:48:33] -rw-r--r-- 1 yeti boinc       620 Apr 27 23:48 runtime_log
[2025-04-27 23:48:33] -rw------- 1 yeti boinc    829440 Apr 27 23:48 result.tar.gz
[2025-04-27 23:48:33] -rw-r--r-- 1 yeti boinc     11608 Apr 27 23:48 runtime_log.err
[2025-04-27 23:48:33] -rw------- 1 yeti boinc       637 Apr 27 23:48 BhgMDmcxGT7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmiXsLDmPKXDFn.diag
[2025-04-27 23:48:33] -rw-r--r-- 1 yeti boinc     21218 Apr 27 23:48 stderr.txt
[2025-04-27 23:48:33] HITS file was successfully produced:
[2025-04-27 23:48:33] -rw------- 1 yeti boinc 194334926 Apr 27 23:47 shared/HITS.pool.root.1
[2025-04-27 23:48:33]  *** Contents of shared directory: ***
[2025-04-27 23:48:33] insgesamt 408864
[2025-04-27 23:48:33] -rw-r--r-- 2 yeti boinc 222964629 Apr 27 22:12 ATLAS.root_0
[2025-04-27 23:48:33] -rw-r--r-- 2 yeti boinc     17569 Apr 27 22:12 start_atlas.sh
[2025-04-27 23:48:33] -rw-r--r-- 2 yeti boinc    508879 Apr 27 22:12 input.tar.gz
[2025-04-27 23:48:33] -rw------- 1 yeti boinc 194334926 Apr 27 23:47 HITS.pool.root.1
[2025-04-27 23:48:33] -rw------- 1 yeti boinc    829440 Apr 27 23:48 result.tar.gz
23:48:34 (2598650): run_atlas exited; CPU time 21521.415067
23:48:34 (2598650): called boinc_finish(0)

</stderr_txt>
]]>

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