Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-27 16:32:27 (6640): Detected: vboxwrapper 26206
2025-04-27 16:32:27 (6640): Detected: BOINC client v8.0.2
2025-04-27 16:32:27 (6640): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-27 16:32:27 (6640): Successfully copied 'init_data.xml' to the shared directory.
2025-04-27 16:32:28 (6640): Create VM. (boinc_77504301824b0007, slot#0)
2025-04-27 16:32:28 (6640): Setting Memory Size for VM. (4600MB)
2025-04-27 16:32:29 (6640): Setting CPU Count for VM. (6)
2025-04-27 16:32:29 (6640): Setting Chipset Options for VM.
2025-04-27 16:32:29 (6640): Setting Graphics Controller Options for VM.
2025-04-27 16:32:29 (6640): Setting Boot Options for VM.
2025-04-27 16:32:30 (6640): Setting Network Configuration for NAT.
2025-04-27 16:32:30 (6640): Enabling VM Network Access.
2025-04-27 16:32:30 (6640): Disabling USB Support for VM.
2025-04-27 16:32:30 (6640): Disabling COM Port Support for VM.
2025-04-27 16:32:31 (6640): Disabling LPT Port Support for VM.
2025-04-27 16:32:31 (6640): Disabling Audio Support for VM.
2025-04-27 16:32:31 (6640): Disabling Clipboard Support for VM.
2025-04-27 16:32:31 (6640): Disabling Drag and Drop Support for VM.
2025-04-27 16:32:32 (6640): Adding storage controller(s) to VM.
2025-04-27 16:32:32 (6640): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-27 16:32:32 (6640): Adding VirtualBox Guest Additions to VM.
2025-04-27 16:32:33 (6640): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-27 16:32:33 (6640): forwarding host port 51765 to guest port 80
2025-04-27 16:32:33 (6640): Enabling remote desktop for VM.
2025-04-27 16:32:34 (6640): Enabling shared directory for VM.
2025-04-27 16:32:34 (6640): Starting VM using VBoxManage interface. (boinc_77504301824b0007, slot#0)
2025-04-27 16:32:39 (6640): Successfully started VM. (PID = '20964')
2025-04-27 16:32:39 (6640): Reporting VM Process ID to BOINC.
2025-04-27 16:32:39 (6640): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-27 16:32:39 (6640): Guest Log: CPUID EDX: 0x178bfbff
2025-04-27 16:32:39 (6640): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-27 16:32:39 (6640): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-27 16:32:39 (6640): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-27 16:32:39 (6640): Detected: Web Application Enabled (http://localhost:51765)
2025-04-27 16:32:39 (6640): Detected: Remote Desktop Enabled (localhost:51766)
2025-04-27 16:32:39 (6640): Preference change detected
2025-04-27 16:32:39 (6640): Setting CPU throttle for VM. (74%)
2025-04-27 16:32:39 (6640): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 23 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-27 16:32:41 (6640): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-27 16:32:41 (6640): Guest Log: BIOS: Booting from Hard Disk...
2025-04-27 16:32:44 (6640): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-27 16:32:44 (6640): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-27 16:32:44 (6640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-27 16:32:49 (6640): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-27 16:32:49 (6640): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-27 16:32:53 (6640): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-27 16:32:53 (6640): Guest Log: 00:00:00.000091 main     Log opened 2025-04-27T16:32:52.248085000Z
2025-04-27 16:32:53 (6640): Guest Log: 00:00:00.000155 main     OS Product: Linux
2025-04-27 16:32:53 (6640): Guest Log: 00:00:00.000173 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-27 16:32:53 (6640): Guest Log: 00:00:00.000187 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-27 16:32:53 (6640): Guest Log: 00:00:00.000202 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-27 16:32:53 (6640): Guest Log: 00:00:00.000202 main     Process ID: 1343
2025-04-27 16:32:53 (6640): Guest Log: 00:00:00.000203 main     Package type: LINUX_64BITS_GENERIC
2025-04-27 16:32:53 (6640): Guest Log: 00:00:00.000635 main     5.2.32 r132073 started. Verbose level = 0
2025-04-27 16:32:54 (6640): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-27 16:32:54 (6640): Guest Log: [INFO] Mounting shared directory
2025-04-27 16:32:54 (6640): Guest Log: [INFO] Checking for init_data.xml
2025-04-27 16:32:57 (6640): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-27 16:32:57 (6640): Guest Log: [INFO] Detected branch: prod
2025-04-27 16:32:58 (6640): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-27 16:32:58 (6640): Guest Log: Copying input files
2025-04-27 16:32:58 (6640): Guest Log: Copied input files into RunAtlas.
2025-04-27 16:32:58 (6640): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-27 16:32:58 (6640): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-27 16:32:58 (6640): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-27 16:32:58 (6640): Guest Log: Further information can be found at the LHC@home message board.
2025-04-27 16:33:03 (6640): Guest Log: 00:00:10.002896 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 684 042 000ns (GuestNow=1 745 760 783 565 405 000 ns GuestLast=1 745 771 572 249 447 000 ns fSetTimeLastLoop=true )
2025-04-27 16:33:07 (6640): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-27 16:33:07 (6640): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-27 16:33:07 (6640): Guest Log: 2.6.3.0 1619 0 30148 145339 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-27 16:33:07 (6640): Guest Log: copied the webapp to /var/www
2025-04-27 16:33:07 (6640): Guest Log: ATHENA_PROC_NUMBER=6
2025-04-27 16:33:07 (6640): Guest Log: ATHENA_CORE_NUMBER=6
2025-04-27 16:33:08 (6640): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-27 16:33:08 (6640): Guest Log:  *** Starting ATLAS job. (PandaID=6617468960 taskID=44292257) ***
2025-04-27 18:03:59 (6640): Preference change detected
2025-04-27 18:03:59 (6640): Setting CPU throttle for VM. (100%)
2025-04-27 18:04:00 (6640): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 23 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-27 18:08:12 (6640): Guest Log:  *** Job finished ***
2025-04-27 18:08:12 (6640): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:03,526 | INFO     | [job] validate thread has finished
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:03,569 | INFO     | [data] copytool_out thread has finished
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:06,021 | INFO     | [data] queue_monitor thread has finished
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:06,967 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139700414752576)>', '<ExcThread(monitor, started 139699171616512)>']
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:07,558 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:07,559 | INFO     | [monitor] control thread has ended
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:11,989 | INFO     | all workflow threads have been joined
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:11,989 | INFO     | end of generic workflow (traces error code: 0)
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:11,989 | INFO     | traces error code: 0
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:11,989 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:12,043 [wrapper] ==== pilot stdout END ====
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:12,046 [wrapper] ==== wrapper stdout RESUME ====
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:12,049 [wrapper] pilotpid: 5957
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:12,053 [wrapper] Pilot exit status: 0
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:12,166 [wrapper] pandaids: 6617468960
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:12,188 [wrapper] cleanup supervisor_pilot   985 5958
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:12,192 [wrapper] Test setup, not cleaning
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:12,196 [wrapper] apfmon messages muted
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:12,200 [wrapper] ==== wrapper stdout END ====
2025-04-27 18:08:12 (6640): Guest Log: 2025-04-27 15:08:12,203 [wrapper] ==== wrapper stderr END ====
2025-04-27 18:08:12 (6640): Guest Log:  *** Error codes and diagnostics ***
2025-04-27 18:08:12 (6640): Guest Log:     "exeErrorCode": 0,
2025-04-27 18:08:12 (6640): Guest Log:     "exeErrorDiag": "",
2025-04-27 18:08:12 (6640): Guest Log:     "pilotErrorCode": 0,
2025-04-27 18:08:12 (6640): Guest Log:     "pilotErrorDiag": "",
2025-04-27 18:08:12 (6640): Guest Log:  *** Listing of results directory ***
2025-04-27 18:08:12 (6640): Guest Log: total 197548
2025-04-27 18:08:12 (6640): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 26 18:15 queuedata.json
2025-04-27 18:08:12 (6640): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 26 18:22 pilot3.tar.gz
2025-04-27 18:08:12 (6640): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 26 18:24 runpilot2-wrapper.sh
2025-04-27 18:08:12 (6640): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 27 13:32 start_atlas.sh
2025-04-27 18:08:12 (6640): Guest Log: -rwxr-xr-x. 1 atlas atlas    508880 Apr 27 13:32 input.tar.gz
2025-04-27 18:08:12 (6640): Guest Log: -rwxr-xr-x. 1 atlas atlas      9147 Apr 27 13:32 init_data.xml
2025-04-27 18:08:12 (6640): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 27 13:32 EVNT.44292255._001127.pool.root.1 -> /data/./ATLAS.root_0
2025-04-27 18:08:12 (6640): Guest Log: -rw-r--r--. 1 atlas atlas      2547 Apr 27 13:33 pandaJob.out
2025-04-27 18:08:12 (6640): Guest Log: -rw-------. 1 atlas atlas       424 Apr 27 13:33 setup.sh.local
2025-04-27 18:08:12 (6640): Guest Log: -rw-------. 1 atlas atlas    992879 Apr 27 13:33 agis_schedconf.cvmfs.json
2025-04-27 18:08:12 (6640): Guest Log: -rw-------. 1 atlas atlas   1596659 Apr 27 13:33 agis_ddmendpoints.agis.ALL.json
2025-04-27 18:08:12 (6640): Guest Log: drwx------. 4 atlas atlas      4096 Apr 27 13:33 pilot3
2025-04-27 18:08:12 (6640): Guest Log: -rw-------. 1 atlas atlas        95 Apr 27 15:07 pilot_heartbeat.json
2025-04-27 18:08:12 (6640): Guest Log: -rw-------. 1 atlas atlas 196993620 Apr 27 15:07 HITS.44292257._011846.pool.root.1
2025-04-27 18:08:12 (6640): Guest Log: -rw-------. 1 atlas atlas      1027 Apr 27 15:07 memory_monitor_summary.json
2025-04-27 18:08:12 (6640): Guest Log: -rw-------. 1 atlas atlas    263144 Apr 27 15:07 log.44292257._011846.job.log.tgz.1
2025-04-27 18:08:12 (6640): Guest Log: -rw-------. 1 atlas atlas      7673 Apr 27 15:07 heartbeat.json
2025-04-27 18:08:12 (6640): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 27 15:08 pilotlog.txt
2025-04-27 18:08:12 (6640): Guest Log: -rw-------. 1 atlas atlas    497564 Apr 27 15:08 log.44292257._011846.job.log.1
2025-04-27 18:08:12 (6640): Guest Log: -rw-------. 1 atlas atlas       357 Apr 27 15:08 output.list
2025-04-27 18:08:12 (6640): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 27 15:08 runtime_log
2025-04-27 18:08:12 (6640): Guest Log: -rw-------. 1 atlas atlas    778240 Apr 27 15:08 result.tar.gz
2025-04-27 18:08:12 (6640): Guest Log: -rw-r--r--. 1 atlas atlas     10943 Apr 27 15:08 runtime_log.err
2025-04-27 18:08:12 (6640): Guest Log: -rw-------. 1 atlas atlas       658 Apr 27 15:08 fS7KDmZNzS7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm22qLDmvBf2nm.diag
2025-04-27 18:08:12 (6640): Guest Log: Looking for outputfile HITS.44292257._011846.pool.root.1
2025-04-27 18:08:12 (6640): Guest Log: HITS file was successfully produced
2025-04-27 18:08:12 (6640): Guest Log: -rw-------. 1 atlas atlas 196993620 Apr 27 15:07 /home/atlas/RunAtlas/HITS.44292257._011846.pool.root.1
2025-04-27 18:08:13 (6640): Guest Log: Successfully finished the ATLAS job!
2025-04-27 18:08:13 (6640): Guest Log: Copying the results back to the shared directory!
2025-04-27 18:08:13 (6640): Guest Log:  *** Contents of shared directory: ***
2025-04-27 18:08:13 (6640): Guest Log: total 221576
2025-04-27 18:08:13 (6640): Guest Log: -rwxrwxrwx. 1 root root  28571936 Apr 27 13:32 ATLAS.root_0
2025-04-27 18:08:13 (6640): Guest Log: -rwxrwxrwx. 1 root root 196993620 Apr 27 15:08 HITS.pool.root.1
2025-04-27 18:08:13 (6640): Guest Log: -rwxrwxrwx. 1 root root      9147 Apr 27 13:32 init_data.xml
2025-04-27 18:08:13 (6640): Guest Log: -rwxrwxrwx. 1 root root    508880 Apr 27 11:54 input.tar.gz
2025-04-27 18:08:13 (6640): Guest Log: -rwxrwxrwx. 1 root root    778240 Apr 27 15:08 result.tar.gz
2025-04-27 18:08:13 (6640): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 27 11:54 start_atlas.sh
2025-04-27 18:08:13 (6640): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-27 18:08:13 (6640): VM Completion File Detected.
2025-04-27 18:08:13 (6640): Powering off VM.
2025-04-27 18:08:14 (6640): Successfully stopped VM.
2025-04-27 18:08:14 (6640): Deregistering VM. (boinc_77504301824b0007, slot#0)
2025-04-27 18:08:14 (6640): Removing network bandwidth throttle group from VM.
2025-04-27 18:08:14 (6640): Removing VM from VirtualBox.
18:08:19 (6640): called boinc_finish(0)

</stderr_txt>
]]>

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