Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-27 19:37:02 (260351): Detected: vboxwrapper 26206
2025-04-27 19:37:02 (260351): Detected: BOINC client v7.18.1
2025-04-27 19:37:04 (260351): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-04-27 19:37:04 (260351): Successfully copied 'init_data.xml' to the shared directory.
2025-04-27 19:37:04 (260351): Create VM. (boinc_ce95bcf055c4835b, slot#3)
2025-04-27 19:37:05 (260351): Setting Memory Size for VM. (4600MB)
2025-04-27 19:37:05 (260351): Setting CPU Count for VM. (6)
2025-04-27 19:37:05 (260351): Setting Chipset Options for VM.
2025-04-27 19:37:05 (260351): Setting Graphics Controller Options for VM.
2025-04-27 19:37:05 (260351): Setting Boot Options for VM.
2025-04-27 19:37:05 (260351): Setting Network Configuration for NAT.
2025-04-27 19:37:05 (260351): Enabling VM Network Access.
2025-04-27 19:37:05 (260351): Disabling USB Support for VM.
2025-04-27 19:37:05 (260351): Disabling COM Port Support for VM.
2025-04-27 19:37:05 (260351): Disabling LPT Port Support for VM.
2025-04-27 19:37:05 (260351): Disabling Audio Support for VM.
2025-04-27 19:37:05 (260351): Disabling Clipboard Support for VM.
2025-04-27 19:37:05 (260351): Disabling Drag and Drop Support for VM.
2025-04-27 19:37:05 (260351): Adding storage controller(s) to VM.
2025-04-27 19:37:05 (260351): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-27 19:37:05 (260351): Adding VirtualBox Guest Additions to VM.
2025-04-27 19:37:05 (260351): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-27 19:37:05 (260351): forwarding host port 37273 to guest port 80
2025-04-27 19:37:05 (260351): Enabling remote desktop for VM.
2025-04-27 19:37:05 (260351): Required extension pack not installed, remote desktop not enabled.
2025-04-27 19:37:05 (260351): Enabling shared directory for VM.
2025-04-27 19:37:06 (260351): Starting VM using VBoxManage interface. (boinc_ce95bcf055c4835b, slot#3)
2025-04-27 19:37:07 (260351): Successfully started VM. (PID = '260905')
2025-04-27 19:37:07 (260351): Reporting VM Process ID to BOINC.
2025-04-27 19:37:07 (260351): Guest Log: BIOS: VirtualBox 6.1.50
2025-04-27 19:37:07 (260351): Guest Log: CPUID EDX: 0x178bfbff
2025-04-27 19:37:07 (260351): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-27 19:37:07 (260351): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-27 19:37:07 (260351): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-27 19:37:07 (260351): Detected: Web Application Enabled (http://localhost:37273)
2025-04-27 19:37:07 (260351): Preference change detected
2025-04-27 19:37:07 (260351): Setting CPU throttle for VM. (90%)
2025-04-27 19:37:07 (260351): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-27 19:37:09 (260351): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-27 19:37:09 (260351): Guest Log: BIOS: Booting from Hard Disk...
2025-04-27 19:37:11 (260351): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-27 19:37:11 (260351): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-27 19:37:11 (260351): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-27 19:37:19 (260351): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-27 19:37:19 (260351): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-27 19:37:23 (260351): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-27 19:37:23 (260351): Guest Log: 00:00:00.000139 main     Log opened 2025-04-27T16:37:20.941666000Z
2025-04-27 19:37:23 (260351): Guest Log: 00:00:00.000245 main     OS Product: Linux
2025-04-27 19:37:23 (260351): Guest Log: 00:00:00.000278 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-27 19:37:23 (260351): Guest Log: 00:00:00.000326 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-27 19:37:23 (260351): Guest Log: 00:00:00.000360 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-27 19:37:23 (260351): Guest Log: 00:00:00.000361 main     Process ID: 1333
2025-04-27 19:37:23 (260351): Guest Log: 00:00:00.000361 main     Package type: LINUX_64BITS_GENERIC
2025-04-27 19:37:23 (260351): Guest Log: 00:00:00.002065 main     5.2.32 r132073 started. Verbose level = 0
2025-04-27 19:37:23 (260351): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-27 19:37:23 (260351): Guest Log: [INFO] Mounting shared directory
2025-04-27 19:37:23 (260351): Guest Log: [INFO] Checking for init_data.xml
2025-04-27 19:38:24 (260351): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-27 19:38:24 (260351): Guest Log: [INFO] Detected branch: prod
2025-04-27 19:38:24 (260351): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-27 19:38:24 (260351): Guest Log: Copying input files
2025-04-27 19:38:25 (260351): Guest Log: Copied input files into RunAtlas.
2025-04-27 19:38:25 (260351): Guest Log: Detected user-configured HTTP proxy at http://proxy.kippola.kiulu10clients.net:3128 - will set in /etc/cvmfs/default.local
2025-04-27 19:38:40 (260351): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-27 19:38:40 (260351): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-27 19:38:40 (260351): Guest Log: 2.6.3.0 1634 0 29636 145344 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.123.108:3128 1
2025-04-27 19:38:41 (260351): Guest Log: copied the webapp to /var/www
2025-04-27 19:38:41 (260351): Guest Log: ATHENA_PROC_NUMBER=6
2025-04-27 19:38:41 (260351): Guest Log: ATHENA_CORE_NUMBER=6
2025-04-27 19:38:41 (260351): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-27 19:38:41 (260351): Guest Log:  *** Starting ATLAS job. (PandaID=6617464148 taskID=44292257) ***
2025-04-27 21:16:07 (260351): Status Report: Elapsed Time: '6000.000000'
2025-04-27 21:16:07 (260351): Status Report: CPU Time: '27227.260000'
2025-04-27 21:48:26 (260351): Guest Log:  *** Job finished ***
2025-04-27 21:48:26 (260351): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:46:29,089 | INFO     | [payload] control thread has finished
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:46:29,610 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:46:33,750 | INFO     | [data] queue_monitor thread has finished
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:46:34,115 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139738347460416)>', '<ExcThread(monitor, started 139737658533632)>']
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:46:34,753 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:46:34,753 | INFO     | [monitor] control thread has ended
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:46:39,120 | INFO     | all workflow threads have been joined
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:46:39,120 | INFO     | end of generic workflow (traces error code: 0)
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:46:39,120 | INFO     | traces error code: 0
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:46:39,120 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:46:39,193 [wrapper] ==== pilot stdout END ====
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:46:39,198 [wrapper] ==== wrapper stdout RESUME ====
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:46:39,203 [wrapper] pilotpid: 5971
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:46:39,207 [wrapper] Pilot exit status: 0
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:47:33,516 [wrapper] pandaids: 6617464148
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:47:33,556 [wrapper] cleanup supervisor_pilot  5063 5972
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:47:33,568 [wrapper] Test setup, not cleaning
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:47:33,576 [wrapper] apfmon messages muted
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:47:33,581 [wrapper] ==== wrapper stdout END ====
2025-04-27 21:48:26 (260351): Guest Log: 2025-04-27 18:47:33,585 [wrapper] ==== wrapper stderr END ====
2025-04-27 21:48:26 (260351): Guest Log:  *** Error codes and diagnostics ***
2025-04-27 21:48:26 (260351): Guest Log:     "exeErrorCode": 68,
2025-04-27 21:48:26 (260351): Guest Log:     "exeErrorDiag": "Fatal error in athena logfile: \"Long ERROR message at line 444 (see jobReport for further details)\"",
2025-04-27 21:48:26 (260351): Guest Log:     "pilotErrorCode": 1305,
2025-04-27 21:48:26 (260351): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformLogfileErrorException: Fatal error in athena logfile: \"Long ERROR message at line 444 (see jobReport for further details)\"",
2025-04-27 21:48:26 (260351): Guest Log:  *** Listing of results directory ***
2025-04-27 21:48:26 (260351): Guest Log: total 5488
2025-04-27 21:48:26 (260351): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 26 16:05 pilot3.tar.gz
2025-04-27 21:48:26 (260351): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 26 16:19 queuedata.json
2025-04-27 21:48:26 (260351): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 26 16:21 runpilot2-wrapper.sh
2025-04-27 21:48:26 (260351): Guest Log: -rw-r--r--. 1 atlas atlas  508871 Apr 27 16:38 input.tar.gz
2025-04-27 21:48:26 (260351): Guest Log: -rw-r--r--. 1 atlas atlas   17569 Apr 27 16:38 start_atlas.sh
2025-04-27 21:48:26 (260351): Guest Log: -rw-r--r--. 1 atlas atlas    7483 Apr 27 16:38 init_data.xml
2025-04-27 21:48:26 (260351): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 27 16:38 EVNT.44292255._000745.pool.root.1 -> /data/./ATLAS.root_0
2025-04-27 21:48:26 (260351): Guest Log: -rw-r--r--. 1 atlas atlas    2549 Apr 27 16:38 pandaJob.out
2025-04-27 21:48:26 (260351): Guest Log: -rw-------. 1 atlas atlas     479 Apr 27 16:38 setup.sh.local
2025-04-27 21:48:26 (260351): Guest Log: -rw-------. 1 atlas atlas  992879 Apr 27 16:39 agis_schedconf.cvmfs.json
2025-04-27 21:48:26 (260351): Guest Log: -rw-------. 1 atlas atlas 1596659 Apr 27 16:39 agis_ddmendpoints.agis.ALL.json
2025-04-27 21:48:26 (260351): Guest Log: drwx------. 4 atlas atlas    4096 Apr 27 16:39 pilot3
2025-04-27 21:48:26 (260351): Guest Log: -rw-------. 1 atlas atlas    1031 Apr 27 18:44 memory_monitor_summary.json
2025-04-27 21:48:26 (260351): Guest Log: -rw-------. 1 atlas atlas  279328 Apr 27 18:44 log.44292257._010704.job.log.tgz.1
2025-04-27 21:48:26 (260351): Guest Log: -rw-------. 1 atlas atlas      95 Apr 27 18:45 pilot_heartbeat.json
2025-04-27 21:48:26 (260351): Guest Log: -rw-------. 1 atlas atlas    9543 Apr 27 18:46 heartbeat.json
2025-04-27 21:48:26 (260351): Guest Log: -rw-------. 1 atlas atlas    4536 Apr 27 18:46 pilotlog.txt
2025-04-27 21:48:26 (260351): Guest Log: -rw-------. 1 atlas atlas  646019 Apr 27 18:47 log.44292257._010704.job.log.1
2025-04-27 21:48:26 (260351): Guest Log: -rw-------. 1 atlas atlas     188 Apr 27 18:47 output.list
2025-04-27 21:48:26 (260351): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 27 18:47 runtime_log
2025-04-27 21:48:26 (260351): Guest Log: -rw-------. 1 atlas atlas  942080 Apr 27 18:47 result.tar.gz
2025-04-27 21:48:26 (260351): Guest Log: -rw-------. 1 atlas atlas     673 Apr 27 18:47 w4bKDmbSxS7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmYrqLDmzvyRtn.diag
2025-04-27 21:48:26 (260351): Guest Log: -rw-r--r--. 1 atlas atlas   11323 Apr 27 18:47 runtime_log.err
2025-04-27 21:48:26 (260351): Guest Log: Looking for outputfile HITS.44292257._010704.pool.root.1
2025-04-27 21:48:26 (260351): Guest Log: No HITS file was produced
2025-04-27 21:48:26 (260351): Guest Log: Successfully finished the ATLAS job!
2025-04-27 21:48:26 (260351): Guest Log: Copying the results back to the shared directory!
2025-04-27 21:48:26 (260351): Guest Log:  *** Contents of shared directory: ***
2025-04-27 21:48:26 (260351): Guest Log: total 28622
2025-04-27 21:48:26 (260351): Guest Log: -rw-r--r--. 1 root root 28749999 Apr 27 16:37 ATLAS.root_0
2025-04-27 21:48:26 (260351): Guest Log: -rw-r--r--. 1 root root     7483 Apr 27 16:37 init_data.xml
2025-04-27 21:48:26 (260351): Guest Log: -rw-r--r--. 1 root root   508871 Apr 27 16:37 input.tar.gz
2025-04-27 21:48:26 (260351): Guest Log: -rw-r--r--. 1 root root   942080 Apr 27  2025 result.tar.gz
2025-04-27 21:48:26 (260351): Guest Log: -rw-r--r--. 1 root root    17569 Apr 27 16:37 start_atlas.sh
2025-04-27 21:48:26 (260351): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-27 21:48:26 (260351): VM Completion File Detected.
2025-04-27 21:48:26 (260351): Powering off VM.
2025-04-27 21:48:26 (260351): Successfully stopped VM.
2025-04-27 21:48:26 (260351): Deregistering VM. (boinc_ce95bcf055c4835b, slot#3)
2025-04-27 21:48:26 (260351): Removing network bandwidth throttle group from VM.
2025-04-27 21:48:26 (260351): Removing VM from VirtualBox.
21:48:31 (260351): called boinc_finish(0)

</stderr_txt>
]]>

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