Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-27 17:49:38 (5324): Detected: vboxwrapper 26206
2025-04-27 17:49:38 (5324): Detected: BOINC client v7.16.20
2025-04-27 17:49:38 (5324): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-04-27 17:49:38 (5324): Successfully copied 'init_data.xml' to the shared directory.
2025-04-27 17:49:39 (5324): Create VM. (boinc_8ad9b2d724f297bd, slot#5)
2025-04-27 17:49:39 (5324): Setting Memory Size for VM. (4700MB)
2025-04-27 17:49:40 (5324): Setting CPU Count for VM. (7)
2025-04-27 17:49:40 (5324): Setting Chipset Options for VM.
2025-04-27 17:49:40 (5324): Setting Graphics Controller Options for VM.
2025-04-27 17:49:40 (5324): Setting Boot Options for VM.
2025-04-27 17:49:41 (5324): Setting Network Configuration for NAT.
2025-04-27 17:49:41 (5324): Enabling VM Network Access.
2025-04-27 17:49:41 (5324): Disabling USB Support for VM.
2025-04-27 17:49:41 (5324): Disabling COM Port Support for VM.
2025-04-27 17:49:42 (5324): Disabling LPT Port Support for VM.
2025-04-27 17:49:42 (5324): Disabling Audio Support for VM.
2025-04-27 17:49:42 (5324): Disabling Clipboard Support for VM.
2025-04-27 17:49:42 (5324): Disabling Drag and Drop Support for VM.
2025-04-27 17:49:43 (5324): Adding storage controller(s) to VM.
2025-04-27 17:49:43 (5324): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-27 17:49:43 (5324): Adding VirtualBox Guest Additions to VM.
2025-04-27 17:49:44 (5324): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-27 17:49:44 (5324): forwarding host port 64126 to guest port 80
2025-04-27 17:49:44 (5324): Enabling remote desktop for VM.
2025-04-27 17:49:45 (5324): Required extension pack not installed, remote desktop not enabled.
2025-04-27 17:49:45 (5324): Enabling shared directory for VM.
2025-04-27 17:49:45 (5324): Starting VM using VBoxManage interface. (boinc_8ad9b2d724f297bd, slot#5)
2025-04-27 17:49:49 (5324): Successfully started VM. (PID = '1716')
2025-04-27 17:49:49 (5324): Reporting VM Process ID to BOINC.
2025-04-27 17:49:49 (5324): Guest Log: BIOS: VirtualBox 6.1.50
2025-04-27 17:49:49 (5324): Guest Log: CPUID EDX: 0x178bfbff
2025-04-27 17:49:49 (5324): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-27 17:49:49 (5324): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-27 17:49:49 (5324): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-27 17:49:49 (5324): Detected: Web Application Enabled (http://localhost:64126)
2025-04-27 17:49:49 (5324): Preference change detected
2025-04-27 17:49:49 (5324): Setting CPU throttle for VM. (100%)
2025-04-27 17:49:50 (5324): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 80 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-27 17:49:51 (5324): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-27 17:49:51 (5324): Guest Log: BIOS: Booting from Hard Disk...
2025-04-27 17:49:54 (5324): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-27 17:49:54 (5324): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-27 17:49:54 (5324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-27 17:49:59 (5324): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-27 17:49:59 (5324): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-27 17:50:05 (5324): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-27 17:50:05 (5324): Guest Log: 00:00:00.000098 main     Log opened 2025-04-27T17:50:03.802260000Z
2025-04-27 17:50:05 (5324): Guest Log: 00:00:00.000162 main     OS Product: Linux
2025-04-27 17:50:05 (5324): Guest Log: 00:00:00.000180 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-27 17:50:05 (5324): Guest Log: 00:00:00.000195 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-27 17:50:05 (5324): Guest Log: 00:00:00.000215 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-27 17:50:05 (5324): Guest Log: 00:00:00.000215 main     Process ID: 1368
2025-04-27 17:50:05 (5324): Guest Log: 00:00:00.000215 main     Package type: LINUX_64BITS_GENERIC
2025-04-27 17:50:05 (5324): Guest Log: 00:00:00.000675 main     5.2.32 r132073 started. Verbose level = 0
2025-04-27 17:50:05 (5324): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-27 17:50:05 (5324): Guest Log: [INFO] Mounting shared directory
2025-04-27 17:50:05 (5324): Guest Log: [INFO] Checking for init_data.xml
2025-04-27 17:50:08 (5324): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-27 17:50:08 (5324): Guest Log: [INFO] Detected branch: prod
2025-04-27 17:50:08 (5324): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-27 17:50:08 (5324): Guest Log: Copying input files
2025-04-27 17:50:09 (5324): Guest Log: Copied input files into RunAtlas.
2025-04-27 17:50:09 (5324): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-27 17:50:09 (5324): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-27 17:50:09 (5324): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-27 17:50:09 (5324): Guest Log: Further information can be found at the LHC@home message board.
2025-04-27 17:50:15 (5324): Guest Log: 00:00:10.005107 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 582 373 000ns (GuestNow=1 745 769 015 221 427 000 ns GuestLast=1 745 776 203 803 800 000 ns fSetTimeLastLoop=true )
2025-04-27 17:50:20 (5324): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-27 17:50:21 (5324): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-27 17:50:21 (5324): Guest Log: 2.6.3.0 1643 0 32196 145343 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-27 17:50:21 (5324): Guest Log: copied the webapp to /var/www
2025-04-27 17:50:21 (5324): Guest Log: ATHENA_PROC_NUMBER=7
2025-04-27 17:50:21 (5324): Guest Log: ATHENA_CORE_NUMBER=7
2025-04-27 17:50:22 (5324): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-27 17:50:22 (5324): Guest Log:  *** Starting ATLAS job. (PandaID=6617612717 taskID=44292257) ***
2025-04-27 19:17:55 (5324): Guest Log:  *** Job finished ***
2025-04-27 19:17:55 (5324): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:39,684 | INFO     | [data] queue_monitor thread has finished
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:44,695 | INFO     | job.realtimelogging is not enabled
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:45,698 | INFO     | [payload] run_realtimelog thread has finished
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:46,980 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139851794593600)>', '<ExcThread(monitor, started 139851340949248)>']
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:47,953 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:47,954 | INFO     | [monitor] control thread has ended
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:52,002 | INFO     | all workflow threads have been joined
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:52,002 | INFO     | end of generic workflow (traces error code: 0)
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:52,003 | INFO     | traces error code: 0
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:52,003 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:52,057 [wrapper] ==== pilot stdout END ====
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:52,060 [wrapper] ==== wrapper stdout RESUME ====
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:52,064 [wrapper] pilotpid: 5977
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:52,067 [wrapper] Pilot exit status: 0
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:52,141 [wrapper] pandaids: 6617612717
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:52,161 [wrapper] cleanup supervisor_pilot   814 5978
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:52,164 [wrapper] Test setup, not cleaning
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:52,168 [wrapper] apfmon messages muted
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:52,171 [wrapper] ==== wrapper stdout END ====
2025-04-27 19:17:55 (5324): Guest Log: 2025-04-27 17:17:52,174 [wrapper] ==== wrapper stderr END ====
2025-04-27 19:17:55 (5324): Guest Log:  *** Error codes and diagnostics ***
2025-04-27 19:17:55 (5324): Guest Log:     "exeErrorCode": 0,
2025-04-27 19:17:55 (5324): Guest Log:     "exeErrorDiag": "",
2025-04-27 19:17:55 (5324): Guest Log:     "pilotErrorCode": 0,
2025-04-27 19:17:55 (5324): Guest Log:     "pilotErrorDiag": "",
2025-04-27 19:17:55 (5324): Guest Log:  *** Listing of results directory ***
2025-04-27 19:17:55 (5324): Guest Log: total 198300
2025-04-27 19:17:55 (5324): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 26 21:34 pilot3.tar.gz
2025-04-27 19:17:55 (5324): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 26 21:46 queuedata.json
2025-04-27 19:17:55 (5324): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 26 21:48 runpilot2-wrapper.sh
2025-04-27 19:17:55 (5324): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 27 15:50 start_atlas.sh
2025-04-27 19:17:55 (5324): Guest Log: -rwxr-xr-x. 1 atlas atlas    508878 Apr 27 15:50 input.tar.gz
2025-04-27 19:17:55 (5324): Guest Log: -rwxr-xr-x. 1 atlas atlas      8774 Apr 27 15:50 init_data.xml
2025-04-27 19:17:55 (5324): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 27 15:50 EVNT.44292255._001292.pool.root.1 -> /data/./ATLAS.root_0
2025-04-27 19:17:55 (5324): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Apr 27 15:50 pandaJob.out
2025-04-27 19:17:55 (5324): Guest Log: -rw-------. 1 atlas atlas       424 Apr 27 15:50 setup.sh.local
2025-04-27 19:17:55 (5324): Guest Log: -rw-------. 1 atlas atlas    992879 Apr 27 15:50 agis_schedconf.cvmfs.json
2025-04-27 19:17:55 (5324): Guest Log: -rw-------. 1 atlas atlas   1596659 Apr 27 15:50 agis_ddmendpoints.agis.ALL.json
2025-04-27 19:17:55 (5324): Guest Log: drwx------. 4 atlas atlas      4096 Apr 27 15:50 pilot3
2025-04-27 19:17:55 (5324): Guest Log: -rw-------. 1 atlas atlas 197791689 Apr 27 17:17 HITS.44292257._013447.pool.root.1
2025-04-27 19:17:55 (5324): Guest Log: -rw-------. 1 atlas atlas        95 Apr 27 17:17 pilot_heartbeat.json
2025-04-27 19:17:55 (5324): Guest Log: -rw-------. 1 atlas atlas      1026 Apr 27 17:17 memory_monitor_summary.json
2025-04-27 19:17:55 (5324): Guest Log: -rw-------. 1 atlas atlas    276650 Apr 27 17:17 log.44292257._013447.job.log.tgz.1
2025-04-27 19:17:55 (5324): Guest Log: -rw-------. 1 atlas atlas      7704 Apr 27 17:17 heartbeat.json
2025-04-27 19:17:55 (5324): Guest Log: -rw-------. 1 atlas atlas      4485 Apr 27 17:17 pilotlog.txt
2025-04-27 19:17:55 (5324): Guest Log: -rw-------. 1 atlas atlas    469166 Apr 27 17:17 log.44292257._013447.job.log.1
2025-04-27 19:17:55 (5324): Guest Log: -rw-------. 1 atlas atlas       357 Apr 27 17:17 output.list
2025-04-27 19:17:55 (5324): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 27 17:17 runtime_log
2025-04-27 19:17:55 (5324): Guest Log: -rw-------. 1 atlas atlas    768000 Apr 27 17:17 result.tar.gz
2025-04-27 19:17:55 (5324): Guest Log: -rw-r--r--. 1 atlas atlas     10935 Apr 27 17:17 runtime_log.err
2025-04-27 19:17:55 (5324): Guest Log: -rw-------. 1 atlas atlas       651 Apr 27 17:17 onaLDmfY2S7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmZ8ALDmywdBCn.diag
2025-04-27 19:17:55 (5324): Guest Log: Looking for outputfile HITS.44292257._013447.pool.root.1
2025-04-27 19:17:55 (5324): Guest Log: HITS file was successfully produced
2025-04-27 19:17:55 (5324): Guest Log: -rw-------. 1 atlas atlas 197791689 Apr 27 17:17 /home/atlas/RunAtlas/HITS.44292257._013447.pool.root.1
2025-04-27 19:17:56 (5324): Guest Log: Successfully finished the ATLAS job!
2025-04-27 19:17:56 (5324): Guest Log: Copying the results back to the shared directory!
2025-04-27 19:17:56 (5324): Guest Log:  *** Contents of shared directory: ***
2025-04-27 19:17:56 (5324): Guest Log: total 412092
2025-04-27 19:17:56 (5324): Guest Log: -rwxrwxrwx. 1 root root 222874662 Apr 27 15:49 ATLAS.root_0
2025-04-27 19:17:56 (5324): Guest Log: -rwxrwxrwx. 1 root root 197791689 Apr 27  2025 HITS.pool.root.1
2025-04-27 19:17:56 (5324): Guest Log: -rwxrwxrwx. 1 root root      8774 Apr 27 15:49 init_data.xml
2025-04-27 19:17:56 (5324): Guest Log: -rwxrwxrwx. 1 root root    508878 Apr 27 07:41 input.tar.gz
2025-04-27 19:17:56 (5324): Guest Log: -rwxrwxrwx. 1 root root    768000 Apr 27  2025 result.tar.gz
2025-04-27 19:17:56 (5324): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 27 07:41 start_atlas.sh
2025-04-27 19:17:56 (5324): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-27 19:17:56 (5324): VM Completion File Detected.
2025-04-27 19:17:56 (5324): Powering off VM.
2025-04-27 19:17:56 (5324): Successfully stopped VM.
2025-04-27 19:17:56 (5324): Deregistering VM. (boinc_8ad9b2d724f297bd, slot#5)
2025-04-27 19:17:56 (5324): Removing network bandwidth throttle group from VM.
2025-04-27 19:17:56 (5324): Removing VM from VirtualBox.
19:18:02 (5324): called boinc_finish(0)

</stderr_txt>
]]>

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