Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
11:50:57 (123316): wrapper (7.7.26015): starting
11:50:57 (123316): wrapper: running run_atlas (--nthreads 4)
[2025-04-27 11:50:57] Arguments: --nthreads 4
[2025-04-27 11:50:57] Threads: 4
[2025-04-27 11:50:57] Checking for CVMFS
[2025-04-27 11:50:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-27 11:50:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-27 11:50:57] Running cvmfs_config stat atlas.cern.ch
[2025-04-27 11:50:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-27 11:50:57] 2.9.2.0 2999 436 70312 145333 1 57 21220657 36864000 0 130560 0 311084 99.989 152583 1597 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-27 11:50:57] CVMFS is ok
[2025-04-27 11:50:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-27 11:50:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-27 11:50:57] Further information can be found at the LHC@home message board.
[2025-04-27 11:50:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-27 11:50:57] Checking for apptainer binary...
[2025-04-27 11:50:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-27 11:50:57] Running /usr/bin/apptainer --version
[2025-04-27 11:50:57] apptainer version 1.3.6-6.1
[2025-04-27 11:50:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-27 11:50:57] belleA253b
[2025-04-27 11:50:57] apptainer works
[2025-04-27 11:50:57] Set ATHENA_PROC_NUMBER=4
[2025-04-27 11:50:57] Set ATHENA_CORE_NUMBER=4
[2025-04-27 11:50:57] Starting ATLAS job with PandaID=6618288747
[2025-04-27 11:50:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:53:15 (2788): wrapper (7.7.26015): starting
13:53:15 (2788): wrapper: running run_atlas (--nthreads 4)
[2025-04-27 13:53:15] Arguments: --nthreads 4
[2025-04-27 13:53:15] Threads: 4
[2025-04-27 13:53:15] This job has been restarted, cleaning up previous attempt
[2025-04-27 13:53:15] Checking for CVMFS
[2025-04-27 13:53:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-27 13:53:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-27 13:53:17] Running cvmfs_config stat atlas.cern.ch
[2025-04-27 13:53:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-27 13:53:17] 2.9.2.0 2987 0 28784 145337 4 1 21254688 36864001 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-27 13:53:17] CVMFS is ok
[2025-04-27 13:53:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-27 13:53:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-27 13:53:17] Further information can be found at the LHC@home message board.
[2025-04-27 13:53:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-27 13:53:17] Checking for apptainer binary...
[2025-04-27 13:53:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-27 13:53:17] Running /usr/bin/apptainer --version
[2025-04-27 13:53:17] apptainer version 1.3.6-6.1
[2025-04-27 13:53:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-27 13:53:18] belleA253b
[2025-04-27 13:53:18] apptainer works
[2025-04-27 13:53:18] Set ATHENA_PROC_NUMBER=4
[2025-04-27 13:53:18] Set ATHENA_CORE_NUMBER=4
[2025-04-27 13:53:18] Starting ATLAS job with PandaID=6618288747
[2025-04-27 13:53:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-27 13:57:05]  *** The last 200 lines of the pilot log: ***
[2025-04-27 13:57:05] 2025-04-27 11:56:49,656 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-27 13:57:05] 2025-04-27 11:56:49,656 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-27 13:57:05] 2025-04-27 11:56:49,656 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-27 13:57:05] 2025-04-27 11:56:49,656 | WARNING  | wrong length of table data, x=[1745754831.0], y=[2622.0] (must be same and length>=4)
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | ..............................
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . Timing measurements:
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . get job = 0 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . initial setup = 0 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . payload setup = 4 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . stage-in = 0 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . payload execution = 57 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . stage-out = 0 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . log creation = 0 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | ..............................
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6618288747/pilotlog.txt
[2025-04-27 13:57:05] 2025-04-27 11:56:49,670 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-04-27 13:57:05] - Log from pilotlog.txt -
[2025-04-27 13:57:05] 2025-04-27 11:56:49,655 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-27 13:57:05] 2025-04-27 11:56:49,655 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6618288747/memory_monitor_summary.json (trf name=prmon)
[2025-04-27 13:57:05] 2025-04-27 11:56:49,656 | INFO     | extracted standard info from prmon json
[2025-04-27 13:57:05] 2025-04-27 11:56:49,656 | INFO     | extracted standard memory fields from prmon json
[2025-04-27 13:57:05] 2025-04-27 11:56:49,656 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-27 13:57:05] 2025-04-27 11:56:49,656 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-27 13:57:05] 2025-04-27 11:56:49,656 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-27 13:57:05] 2025-04-27 11:56:49,656 | WARNING  | wrong length of table data, x=[1745754831.0], y=[2622.0] (must be same and length>=4)
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | ..............................
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . Timing measurements:
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . get job = 0 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . initial setup = 0 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . payload setup = 4 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . stage-in = 0 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . payload execution = 57 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . stage-out = 0 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . log creation = 0 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | ..............................
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6618288747/pilotlog.txt
[2025-04-27 13:57:05] 2025-04-27 11:56:49,671 | WARNING  | 
[2025-04-27 13:57:05] [begin log extracts]
[2025-04-27 13:57:05] - Log from pilotlog.txt -
[2025-04-27 13:57:05] 2025-04-27 11:56:49,655 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-27 13:57:05] 2025-04-27 11:56:49,655 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6618288747/memory_monitor_summary.json (trf name=prmon)
[2025-04-27 13:57:05] 2025-04-27 11:56:49,656 | INFO     | extracted standard info from prmon json
[2025-04-27 13:57:05] 2025-04-27 11:56:49,656 | INFO     | extracted standard memory fields from prmon json
[2025-04-27 13:57:05] 2025-04-27 11:56:49,656 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-27 13:57:05] 2025-04-27 11:56:49,656 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-27 13:57:05] 2025-04-27 11:56:49,656 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-27 13:57:05] 2025-04-27 11:56:49,656 | WARNING  | wrong length of table data, x=[1745754831.0], y=[2622.0] (must be same and length>=4)
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | ..............................
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . Timing measurements:
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . get job = 0 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . initial setup = 0 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . payload setup = 4 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . stage-in = 0 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . payload execution = 57 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . stage-out = 0 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | . log creation = 0 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | ..............................
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-04-27 13:57:05] 2025-04-27 11:56:49,657 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6618288747/pilotlog.txt
[2025-04-27 13:57:05] [end log extracts]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,671 | WARNING  | pilotErrorCodes = [1305, 1328] (will report primary/first error code)
[2025-04-27 13:57:05] 2025-04-27 11:56:49,671 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-04-27 13:57:05] 2025-04-27 11:56:49,711 | INFO     | 
[2025-04-27 13:57:05] 2025-04-27 11:56:49,711 | INFO     | job summary report
[2025-04-27 13:57:05] 2025-04-27 11:56:49,711 | INFO     | --------------------------------------------------
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | PanDA job id: 6618288747
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | task id: 44270651
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-04-27 11:54:40,234 CRITICAL Transform executor raised TransformValidationExceptio
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | error 2/2: 1328: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139) (job report)
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | pilot error code: 1328
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | pilot error diag: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139) (job report)
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | pilot state: failed 
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | transexitcode: 65
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | exeerrorcode: 0
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | exeerrordiag: 
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | exitcode: 65
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | exitmsg: EVNTtoHITS got a SIGSEGV signal (exit code 139)
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | cpuconsumptiontime: 22 s
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | nevents: 0
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | neventsw: 0
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | pid: 13662
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | pgrp: 13662
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | corecount: 4
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | event service: False
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | sizes: {0: 2393631, 4: 2393837, 11: 2393865, 65: 2417475, 66: 2417451, 67: 2421720, 69: 2421936, 188: 2422078}
[2025-04-27 13:57:05] 2025-04-27 11:56:49,712 | INFO     | --------------------------------------------------
[2025-04-27 13:57:05] 2025-04-27 11:56:49,713 | INFO     | 
[2025-04-27 13:57:05] 2025-04-27 11:56:49,713 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-27 13:57:05] 2025-04-27 11:56:49,731 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,731 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,731 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,731 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,731 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,731 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,731 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,731 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,731 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,732 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,732 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,732 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,732 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,732 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,732 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,732 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,732 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,732 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-27 13:57:05] 2025-04-27 11:56:49,732 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,732 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-27 13:57:05] 2025-04-27 11:56:49,732 | INFO     | job 6618288747 has completed (purged errors)
[2025-04-27 13:57:05] 2025-04-27 11:56:49,732 | INFO     | overall cleanup function is called
[2025-04-27 13:57:05] 2025-04-27 11:56:50,738 | INFO     | --- collectZombieJob: --- 10, [13662]
[2025-04-27 13:57:05] 2025-04-27 11:56:50,739 | INFO     | zombie collector waiting for pid 13662
[2025-04-27 13:57:05] 2025-04-27 11:56:50,739 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-27 13:57:05] 2025-04-27 11:56:50,739 | INFO     | collected zombie processes
[2025-04-27 13:57:05] 2025-04-27 11:56:50,739 | INFO     | will attempt to kill all subprocesses of pid=13662
[2025-04-27 13:57:05] 2025-04-27 11:56:50,785 | INFO     | process IDs to be killed: [13662] (in reverse order)
[2025-04-27 13:57:05] 2025-04-27 11:56:50,818 | WARNING  | found no corresponding commands to process id(s)
[2025-04-27 13:57:05] 2025-04-27 11:56:50,819 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-27 13:57:05] 2025-04-27 11:56:50,820 | INFO     | did not find any defunct processes belonging to 13662
[2025-04-27 13:57:05] 2025-04-27 11:56:50,822 | INFO     | did not find any defunct processes belonging to 13662
[2025-04-27 13:57:05] 2025-04-27 11:56:50,822 | INFO     | ready for new job
[2025-04-27 13:57:05] 2025-04-27 11:56:50,822 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-27 13:57:05] 2025-04-27 11:56:50,822 | INFO     | **************************************
[2025-04-27 13:57:05] 2025-04-27 11:56:50,822 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-27 13:57:05] 2025-04-27 11:56:50,822 | INFO     | **************************************
[2025-04-27 13:57:05] 2025-04-27 11:56:50,822 | INFO     | 
[2025-04-27 13:57:05] 2025-04-27 11:56:50,823 | INFO     | architecture information:
[2025-04-27 13:57:05] 2025-04-27 11:56:50,823 | INFO     | executing command: cat /etc/os-release
[2025-04-27 13:57:05] 2025-04-27 11:56:50,837 | INFO     | cat /etc/os-release:
[2025-04-27 13:57:05] NAME="CentOS Linux"
[2025-04-27 13:57:05] VERSION="7 (Core)"
[2025-04-27 13:57:05] ID="centos"
[2025-04-27 13:57:05] ID_LIKE="rhel fedora"
[2025-04-27 13:57:05] VERSION_ID="7"
[2025-04-27 13:57:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-27 13:57:05] ANSI_COLOR="0;31"
[2025-04-27 13:57:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-27 13:57:05] HOME_URL="https://www.centos.org/"
[2025-04-27 13:57:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-27 13:57:05] 
[2025-04-27 13:57:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-27 13:57:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-27 13:57:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-27 13:57:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-27 13:57:05] 
[2025-04-27 13:57:05] 2025-04-27 11:56:50,837 | INFO     | **************************************
[2025-04-27 13:57:05] 2025-04-27 11:56:51,340 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-27 13:57:05] 2025-04-27 11:56:51,359 | INFO     | sufficient remaining disk space (335808561152 B)
[2025-04-27 13:57:05] 2025-04-27 11:56:51,359 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-27 13:57:05] 2025-04-27 11:56:51,359 | INFO     | current server update state: UPDATING_FINAL
[2025-04-27 13:57:05] 2025-04-27 11:56:51,359 | INFO     | update_server=False
[2025-04-27 13:57:05] 2025-04-27 11:56:51,359 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-27 13:57:05] 2025-04-27 11:56:51,359 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-27 13:57:05] 2025-04-27 11:56:51,360 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-27 13:57:05] 2025-04-27 11:56:51,360 | INFO     | found 0 job(s) in 20 queues
[2025-04-27 13:57:05] 2025-04-27 11:56:51,360 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-27 13:57:05] 2025-04-27 11:56:51,360 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-27 13:57:05] 2025-04-27 11:56:51,524 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-27 13:57:05] 2025-04-27 11:56:51,525 | INFO     | aborting loop
[2025-04-27 13:57:05] 2025-04-27 11:56:51,708 | INFO     | all data control threads have been joined
[2025-04-27 13:57:05] 2025-04-27 11:56:52,016 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-27 13:57:05] 2025-04-27 11:56:52,236 | INFO     | all payload control threads have been joined
[2025-04-27 13:57:05] 2025-04-27 11:56:52,301 | INFO     | all job control threads have been joined
[2025-04-27 13:57:05] 2025-04-27 11:56:52,364 | INFO     | [job] retrieve thread has finished
[2025-04-27 13:57:05] 2025-04-27 11:56:52,365 | INFO     | [job] queue monitor thread has finished
[2025-04-27 13:57:05] 2025-04-27 11:56:52,439 | INFO     | [data] copytool_in thread has finished
[2025-04-27 13:57:05] 2025-04-27 11:56:52,530 | INFO     | [job] job monitor thread has finished
[2025-04-27 13:57:05] 2025-04-27 11:56:52,714 | INFO     | [data] control thread has finished
[2025-04-27 13:57:05] 2025-04-27 11:56:52,986 | INFO     | [payload] execute_payloads thread has finished
[2025-04-27 13:57:05] 2025-04-27 11:56:52,989 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-27 13:57:05] 2025-04-27 11:56:53,110 | INFO     | [job] validate thread has finished
[2025-04-27 13:57:05] 2025-04-27 11:56:53,205 | INFO     | [job] create_data_payload thread has finished
[2025-04-27 13:57:05] 2025-04-27 11:56:53,241 | INFO     | [payload] control thread has finished
[2025-04-27 13:57:05] 2025-04-27 11:56:53,299 | INFO     | [payload] validate_pre thread has finished
[2025-04-27 13:57:05] 2025-04-27 11:56:53,307 | INFO     | [job] control thread has finished
[2025-04-27 13:57:05] 2025-04-27 11:56:53,339 | INFO     | [payload] validate_post thread has finished
[2025-04-27 13:57:05] 2025-04-27 11:56:53,758 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-27 13:57:05] 2025-04-27 11:56:53,867 | INFO     | [payload] failed_post thread has finished
[2025-04-27 13:57:05] 2025-04-27 11:56:54,020 | INFO     | [data] copytool_out thread has finished
[2025-04-27 13:57:05] 2025-04-27 11:56:57,765 | INFO     | [data] queue_monitor thread has finished
[2025-04-27 13:57:05] 2025-04-27 11:56:59,782 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139753587447616)>', '<ExcThread(monitor, started 139752581879552)>']
[2025-04-27 13:57:05] 2025-04-27 11:57:00,408 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-27 13:57:05] 2025-04-27 11:57:00,408 | INFO     | [monitor] control thread has ended
[2025-04-27 13:57:05] 2025-04-27 11:57:04,807 | INFO     | all workflow threads have been joined
[2025-04-27 13:57:05] 2025-04-27 11:57:04,808 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-27 13:57:05] 2025-04-27 11:57:04,808 | INFO     | traces error code: 0
[2025-04-27 13:57:05] 2025-04-27 11:57:04,808 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-27 13:57:05] 2025-04-27 11:57:04,884 [wrapper] ==== pilot stdout END ====
[2025-04-27 13:57:05] 2025-04-27 11:57:04,888 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-27 13:57:05] 2025-04-27 11:57:04,892 [wrapper] pilotpid: 7067
[2025-04-27 13:57:05] 2025-04-27 11:57:04,896 [wrapper] Pilot exit status: 0
[2025-04-27 13:57:05] 2025-04-27 11:57:04,909 [wrapper] pandaids: 6618288747 6618288747
[2025-04-27 13:57:05] 2025-04-27 11:57:04,933 [wrapper] cleanup supervisor_pilot    7073 7068
[2025-04-27 13:57:05] 2025-04-27 11:57:04,939 [wrapper] Test setup, not cleaning
[2025-04-27 13:57:05] 2025-04-27 11:57:04,944 [wrapper] apfmon messages muted
[2025-04-27 13:57:05] 2025-04-27 11:57:04,948 [wrapper] ==== wrapper stdout END ====
[2025-04-27 13:57:05] 2025-04-27 11:57:04,952 [wrapper] ==== wrapper stderr END ====
[2025-04-27 13:57:05]  *** Error codes and diagnostics ***
[2025-04-27 13:57:05]     "exeErrorCode": 0,
[2025-04-27 13:57:05]     "exeErrorDiag": "",
[2025-04-27 13:57:05]     "pilotErrorCode": 1305,
[2025-04-27 13:57:05]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139)",
[2025-04-27 13:57:05]  *** Listing of results directory ***
[2025-04-27 13:57:05] total 425052
[2025-04-27 13:57:05] drwx------ 4 boinc boinc      4096 Apr  3 10:00 pilot3
[2025-04-27 13:57:05] -rw-r--r-- 1 boinc boinc    495897 Apr 26 15:28 pilot3.tar.gz
[2025-04-27 13:57:05] -rwx------ 1 boinc boinc     37140 Apr 26 15:35 runpilot2-wrapper.sh
[2025-04-27 13:57:05] -rw-r--r-- 1 boinc boinc      5111 Apr 26 15:35 queuedata.json
[2025-04-27 13:57:05] -rw-r--r-- 1 boinc boinc       100 Apr 27 11:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-27 13:57:05] -rwxr-xr-x 1 boinc boinc      7986 Apr 27 11:50 run_atlas
[2025-04-27 13:57:05] -rw-r--r-- 1 boinc boinc       105 Apr 27 11:50 job.xml
[2025-04-27 13:57:05] -rw-r--r-- 3 boinc boinc 215609019 Apr 27 11:50 EVNT.44270648._000225.pool.root.1
[2025-04-27 13:57:05] -rw-r--r-- 3 boinc boinc 215609019 Apr 27 11:50 ATLAS.root_0
[2025-04-27 13:57:05] drwxrwx--x 2 boinc boinc      4096 Apr 27 11:50 shared
[2025-04-27 13:57:05] -rw-r--r-- 2 boinc boinc    508865 Apr 27 11:50 input.tar.gz
[2025-04-27 13:57:05] -rw-r--r-- 2 boinc boinc     17569 Apr 27 11:50 start_atlas.sh
[2025-04-27 13:57:05] -rw-r--r-- 1 boinc boinc         0 Apr 27 11:50 boinc_lockfile
[2025-04-27 13:57:05] -rw------- 1 boinc boinc   1596659 Apr 27 11:51 agis_ddmendpoints.agis.ALL.json
[2025-04-27 13:57:05] -rw-r--r-- 1 boinc boinc      6706 Apr 27 13:53 init_data.xml
[2025-04-27 13:57:05] -rw-r--r-- 1 boinc boinc      2480 Apr 27 13:53 pandaJob.out
[2025-04-27 13:57:05] -rw------- 1 boinc boinc       424 Apr 27 13:53 setup.sh.local
[2025-04-27 13:57:05] -rw------- 1 boinc boinc    992855 Apr 27 13:53 agis_schedconf.cvmfs.json
[2025-04-27 13:57:05] -rw------- 1 boinc boinc       954 Apr 27 13:54 memory_monitor_summary.json
[2025-04-27 13:57:05] -rw------- 1 boinc boinc     20467 Apr 27 13:54 log.44270651._005835.job.log.tgz.1
[2025-04-27 13:57:05] -rw-r--r-- 1 boinc boinc       531 Apr 27 13:54 boinc_task_state.xml
[2025-04-27 13:57:05] -rw------- 1 boinc boinc        97 Apr 27 13:56 pilot_heartbeat.json
[2025-04-27 13:57:05] -rw------- 1 boinc boinc      8306 Apr 27 13:56 heartbeat.json
[2025-04-27 13:57:05] -rw-r--r-- 1 boinc boinc      8192 Apr 27 13:56 boinc_mmap_file
[2025-04-27 13:57:05] -rw-r--r-- 1 boinc boinc        27 Apr 27 13:56 wrapper_checkpoint.txt
[2025-04-27 13:57:05] -rw------- 1 boinc boinc      4480 Apr 27 13:57 pilotlog.txt
[2025-04-27 13:57:05] -rw------- 1 boinc boinc     77656 Apr 27 13:57 log.44270651._005835.job.log.1
[2025-04-27 13:57:05] -rw------- 1 boinc boinc       188 Apr 27 13:57 output.list
[2025-04-27 13:57:05] -rw-r--r-- 1 boinc boinc       620 Apr 27 13:57 runtime_log
[2025-04-27 13:57:05] -rw------- 1 boinc boinc    112640 Apr 27 13:57 result.tar.gz
[2025-04-27 13:57:05] -rw-r--r-- 1 boinc boinc     11051 Apr 27 13:57 runtime_log.err
[2025-04-27 13:57:05] -rw------- 1 boinc boinc       780 Apr 27 13:57 JzFODmFsuS7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmGcqLDmRlGh4n.diag
[2025-04-27 13:57:05] -rw-r--r-- 1 boinc boinc     23834 Apr 27 13:57 stderr.txt
[2025-04-27 13:57:05] No HITS result produced
[2025-04-27 13:57:05]  *** Contents of shared directory: ***
[2025-04-27 13:57:05] total 211192
[2025-04-27 13:57:05] -rw-r--r-- 3 boinc boinc 215609019 Apr 27 11:50 ATLAS.root_0
[2025-04-27 13:57:05] -rw-r--r-- 2 boinc boinc    508865 Apr 27 11:50 input.tar.gz
[2025-04-27 13:57:05] -rw-r--r-- 2 boinc boinc     17569 Apr 27 11:50 start_atlas.sh
[2025-04-27 13:57:05] -rw------- 1 boinc boinc    112640 Apr 27 13:57 result.tar.gz
13:57:06 (2788): run_atlas exited; CPU time 18.776574
13:57:06 (2788): called boinc_finish(0)

</stderr_txt>
]]>

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