Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:29:55 (26654): wrapper (7.7.26015): starting
20:29:55 (26654): wrapper: running run_atlas (--nthreads 8)
[2025-04-26 20:29:55] Arguments: --nthreads 8
[2025-04-26 20:29:55] Threads: 8
[2025-04-26 20:29:55] Checking for CVMFS
[2025-04-26 20:29:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-26 20:29:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-26 20:29:57] Running cvmfs_config stat atlas.cern.ch
[2025-04-26 20:29:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-26 20:29:59] 2.11.2.0 1634 52885 354776 145320 2 363 16268859 18432001 16809 130560 0 205225566 98.690 582341914 54830 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-26 20:29:59] CVMFS is ok
[2025-04-26 20:29:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-26 20:29:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-26 20:29:59] Further information can be found at the LHC@home message board.
[2025-04-26 20:29:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-26 20:29:59] Checking for apptainer binary...
[2025-04-26 20:29:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-26 20:29:59] Running /usr/bin/apptainer --version
[2025-04-26 20:29:59] apptainer version 1.3.2-1.el7
[2025-04-26 20:29:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-26 20:30:28] c-210-41.aglt2.org
[2025-04-26 20:30:28] apptainer works
[2025-04-26 20:30:28] Set ATHENA_PROC_NUMBER=8
[2025-04-26 20:30:28] Set ATHENA_CORE_NUMBER=8
[2025-04-26 20:30:28] Starting ATLAS job with PandaID=6617362202
[2025-04-26 20:30:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:20:03 (26654): BOINC client no longer exists - exiting
22:20:03 (26654): timer handler: client dead, exiting
22:27:37 (19655): wrapper (7.7.26015): starting
22:27:37 (19655): wrapper: running run_atlas (--nthreads 8)
[2025-04-26 22:27:37] Arguments: --nthreads 8
[2025-04-26 22:27:37] Threads: 8
[2025-04-26 22:27:37] This job has been restarted, cleaning up previous attempt
[2025-04-26 22:27:37] Checking for CVMFS
[2025-04-26 22:27:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-26 22:27:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-26 22:27:38] Running cvmfs_config stat atlas.cern.ch
[2025-04-26 22:27:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-26 22:27:38] 2.11.2.0 1634 53003 364180 145323 1 541 9680753 18432000 14893 130560 0 206388367 98.678 589131521 54588 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-26 22:27:38] CVMFS is ok
[2025-04-26 22:27:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-26 22:27:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-26 22:27:38] Further information can be found at the LHC@home message board.
[2025-04-26 22:27:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-26 22:27:38] Checking for apptainer binary...
[2025-04-26 22:27:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-26 22:27:38] Running /usr/bin/apptainer --version
[2025-04-26 22:27:38] apptainer version 1.3.2-1.el7
[2025-04-26 22:27:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-26 22:27:42] c-210-41.aglt2.org
[2025-04-26 22:27:42] apptainer works
[2025-04-26 22:27:42] Set ATHENA_PROC_NUMBER=8
[2025-04-26 22:27:42] Set ATHENA_CORE_NUMBER=8
[2025-04-26 22:27:42] Starting ATLAS job with PandaID=6617362202
[2025-04-26 22:27:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-27 06:20:55]  *** The last 200 lines of the pilot log: ***
[2025-04-27 06:20:55] 2025-04-27 10:20:37,257 | INFO     | mean x: 1745735070.4190066
[2025-04-27 06:20:55] 2025-04-27 10:20:37,257 | INFO     | mean y: 2424882.5097192223
[2025-04-27 06:20:55] 2025-04-27 10:20:37,257 | INFO     | -- intersect: -17941303573.24796
[2025-04-27 06:20:55] 2025-04-27 10:20:37,257 | INFO     | intersect: -17941303573.24796
[2025-04-27 06:20:55] 2025-04-27 10:20:37,257 | INFO     | chi2: 7.760763931791239
[2025-04-27 06:20:55] 2025-04-27 10:20:37,265 | INFO     | sum of square deviations: 29790680104.32539
[2025-04-27 06:20:55] 2025-04-27 10:20:37,270 | INFO     | sum of deviations: 375981155180.47754
[2025-04-27 06:20:55] 2025-04-27 10:20:37,270 | INFO     | mean x: 1745734917.923581
[2025-04-27 06:20:55] 2025-04-27 10:20:37,270 | INFO     | mean y: 2434038.927947598
[2025-04-27 06:20:55] 2025-04-27 10:20:37,270 | INFO     | -- intersect: -22030075080.74485
[2025-04-27 06:20:55] 2025-04-27 10:20:37,270 | INFO     | intersect: -22030075080.74485
[2025-04-27 06:20:55] 2025-04-27 10:20:37,271 | INFO     | chi2: 6.11610902382158
[2025-04-27 06:20:55] 2025-04-27 10:20:37,271 | INFO     | current chi2=6.11610902382158 (change=21.191920311252925 %)
[2025-04-27 06:20:55] 2025-04-27 10:20:37,271 | INFO     | right removable region: 457
[2025-04-27 06:20:55] 2025-04-27 10:20:37,272 | INFO     | sum of square deviations: 29790561764.325424
[2025-04-27 06:20:55] 2025-04-27 10:20:37,276 | INFO     | sum of deviations: 184390565831.05426
[2025-04-27 06:20:55] 2025-04-27 10:20:37,276 | INFO     | mean x: 1745735222.923581
[2025-04-27 06:20:55] 2025-04-27 10:20:37,276 | INFO     | mean y: 2445263.430131004
[2025-04-27 06:20:55] 2025-04-27 10:20:37,276 | INFO     | -- intersect: -10802893289.519098
[2025-04-27 06:20:55] 2025-04-27 10:20:37,276 | INFO     | intersect: -10802893289.519098
[2025-04-27 06:20:55] 2025-04-27 10:20:37,277 | INFO     | chi2: 4.570833620635995
[2025-04-27 06:20:55] 2025-04-27 10:20:37,277 | INFO     | current chi2=4.570833620635995 (change=41.103302963358985 %)
[2025-04-27 06:20:55] 2025-04-27 10:20:37,277 | INFO     | sum of square deviations: 28825451940.918327
[2025-04-27 06:20:55] 2025-04-27 10:20:37,284 | INFO     | sum of deviations: 85221551447.29572
[2025-04-27 06:20:55] 2025-04-27 10:20:37,284 | INFO     | mean x: 1745735375.428256
[2025-04-27 06:20:55] 2025-04-27 10:20:37,284 | INFO     | mean y: 2460934.0706401765
[2025-04-27 06:20:55] 2025-04-27 10:20:37,284 | INFO     | -- intersect: -5158751365.925776
[2025-04-27 06:20:55] 2025-04-27 10:20:37,284 | INFO     | intersect: -5158751365.925776
[2025-04-27 06:20:55] 2025-04-27 10:20:37,285 | INFO     | chi2: 2.891281829029484
[2025-04-27 06:20:55] 2025-04-27 10:20:37,285 | INFO     | current chi2=2.891281829029484 (change=36.74497763436017 %)
[2025-04-27 06:20:55] 2025-04-27 10:20:37,286 | INFO     | sum of square deviations: 27881412279.99116
[2025-04-27 06:20:55] 2025-04-27 10:20:37,290 | INFO     | sum of deviations: 9706842518.71872
[2025-04-27 06:20:55] 2025-04-27 10:20:37,291 | INFO     | mean x: 1745735527.9330356
[2025-04-27 06:20:55] 2025-04-27 10:20:37,291 | INFO     | mean y: 2473109.390625
[2025-04-27 06:20:55] 2025-04-27 10:20:37,291 | INFO     | -- intersect: -605300258.7159505
[2025-04-27 06:20:55] 2025-04-27 10:20:37,291 | INFO     | intersect: -605300258.7159505
[2025-04-27 06:20:55] 2025-04-27 10:20:37,292 | INFO     | chi2: 1.8142517219674166
[2025-04-27 06:20:55] 2025-04-27 10:20:37,292 | INFO     | current chi2=1.8142517219674166 (change=37.25095548446046 %)
[2025-04-27 06:20:55] 2025-04-27 10:20:37,292 | INFO     | sum of square deviations: 26958237302.9165
[2025-04-27 06:20:55] 2025-04-27 10:20:37,297 | INFO     | sum of deviations: -11632287209.550793
[2025-04-27 06:20:55] 2025-04-27 10:20:37,297 | INFO     | mean x: 1745735680.4356658
[2025-04-27 06:20:55] 2025-04-27 10:20:37,297 | INFO     | mean y: 2476633.62979684
[2025-04-27 06:20:55] 2025-04-27 10:20:37,297 | INFO     | -- intersect: 755749134.2985007
[2025-04-27 06:20:55] 2025-04-27 10:20:37,297 | INFO     | intersect: 755749134.2985007
[2025-04-27 06:20:55] 2025-04-27 10:20:37,298 | INFO     | chi2: 1.74198459658705
[2025-04-27 06:20:55] 2025-04-27 10:20:37,298 | INFO     | current chi2=1.74198459658705 (change=3.9833020140115103 %)
[2025-04-27 06:20:55] 2025-04-27 10:20:37,298 | INFO     | left removable region: 40
[2025-04-27 06:20:55] 2025-04-27 10:20:37,298 | INFO     | sum of square deviations: 22484789605.141495
[2025-04-27 06:20:55] 2025-04-27 10:20:37,301 | INFO     | sum of deviations: 37864979297.39088
[2025-04-27 06:20:55] 2025-04-27 10:20:37,302 | INFO     | mean x: 1745736107.4484413
[2025-04-27 06:20:55] 2025-04-27 10:20:37,302 | INFO     | mean y: 2488628.8321342925
[2025-04-27 06:20:55] 2025-04-27 10:20:37,302 | INFO     | -- intersect: -2937377063.846069
[2025-04-27 06:20:55] 2025-04-27 10:20:37,302 | INFO     | intersect: -2937377063.846069
[2025-04-27 06:20:55] 2025-04-27 10:20:37,302 | INFO     | chi2: 0.0033666018956321655
[2025-04-27 06:20:55] 2025-04-27 10:20:37,302 | INFO     | -- intersect: -2937377063.846069
[2025-04-27 06:20:55] 2025-04-27 10:20:37,302 | INFO     | current memory leak: 1.68 B/s (using 417 data points, chi2=0.00)
[2025-04-27 06:20:55] 2025-04-27 10:20:37,303 | INFO     | ..............................
[2025-04-27 06:20:55] 2025-04-27 10:20:37,303 | INFO     | . Timing measurements:
[2025-04-27 06:20:55] 2025-04-27 10:20:37,303 | INFO     | . get job = 0 s
[2025-04-27 06:20:55] 2025-04-27 10:20:37,303 | INFO     | . initial setup = 2 s
[2025-04-27 06:20:55] 2025-04-27 10:20:37,303 | INFO     | . payload setup = 21 s
[2025-04-27 06:20:55] 2025-04-27 10:20:37,303 | INFO     | . stage-in = 0 s
[2025-04-27 06:20:55] 2025-04-27 10:20:37,304 | INFO     | . payload execution = 28222 s
[2025-04-27 06:20:55] 2025-04-27 10:20:37,304 | INFO     | . stage-out = 4 s
[2025-04-27 06:20:55] 2025-04-27 10:20:37,304 | INFO     | . log creation = 0 s
[2025-04-27 06:20:55] 2025-04-27 10:20:37,304 | INFO     | ..............................
[2025-04-27 06:20:55] 2025-04-27 10:20:37,438 | INFO     | 
[2025-04-27 06:20:55] 2025-04-27 10:20:37,438 | INFO     | job summary report
[2025-04-27 06:20:55] 2025-04-27 10:20:37,438 | INFO     | --------------------------------------------------
[2025-04-27 06:20:55] 2025-04-27 10:20:37,438 | INFO     | PanDA job id: 6617362202
[2025-04-27 06:20:55] 2025-04-27 10:20:37,438 | INFO     | task id: 44292257
[2025-04-27 06:20:55] 2025-04-27 10:20:37,438 | INFO     | errors: (none)
[2025-04-27 06:20:55] 2025-04-27 10:20:37,438 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-27 06:20:55] 2025-04-27 10:20:37,438 | INFO     | pilot state: finished 
[2025-04-27 06:20:55] 2025-04-27 10:20:37,439 | INFO     | transexitcode: 0
[2025-04-27 06:20:55] 2025-04-27 10:20:37,439 | INFO     | exeerrorcode: 0
[2025-04-27 06:20:55] 2025-04-27 10:20:37,439 | INFO     | exeerrordiag: 
[2025-04-27 06:20:55] 2025-04-27 10:20:37,439 | INFO     | exitcode: 0
[2025-04-27 06:20:55] 2025-04-27 10:20:37,439 | INFO     | exitmsg: OK
[2025-04-27 06:20:55] 2025-04-27 10:20:37,439 | INFO     | cpuconsumptiontime: 40011 s
[2025-04-27 06:20:55] 2025-04-27 10:20:37,439 | INFO     | nevents: 400
[2025-04-27 06:20:55] 2025-04-27 10:20:37,439 | INFO     | neventsw: 0
[2025-04-27 06:20:55] 2025-04-27 10:20:37,439 | INFO     | pid: 30950
[2025-04-27 06:20:55] 2025-04-27 10:20:37,439 | INFO     | pgrp: 30950
[2025-04-27 06:20:55] 2025-04-27 10:20:37,439 | INFO     | corecount: 8
[2025-04-27 06:20:55] 2025-04-27 10:20:37,439 | INFO     | event service: False
[2025-04-27 06:20:55] 2025-04-27 10:20:37,439 | INFO     | sizes: {0: 2393498, 1: 2393753, 12: 2393753, 14: 2393987, 22: 2394015, 28247: 2430319, 28248: 2430446, 28253: 2439443, 28257: 2439499, 28312: 2439669}
[2025-04-27 06:20:55] 2025-04-27 10:20:37,439 | INFO     | --------------------------------------------------
[2025-04-27 06:20:55] 2025-04-27 10:20:37,439 | INFO     | 
[2025-04-27 06:20:55] 2025-04-27 10:20:37,440 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-04-27 06:20:55] 2025-04-27 10:20:37,597 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,597 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,597 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,597 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,597 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,598 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,598 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,598 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,598 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,598 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,598 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,598 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,598 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,598 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,598 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,598 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,598 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,598 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-27 06:20:55] 2025-04-27 10:20:37,598 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,598 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-27 06:20:55] 2025-04-27 10:20:37,598 | INFO     | job 6617362202 has completed (purged errors)
[2025-04-27 06:20:55] 2025-04-27 10:20:37,599 | INFO     | overall cleanup function is called
[2025-04-27 06:20:55] 2025-04-27 10:20:38,618 | INFO     | --- collectZombieJob: --- 10, [30950]
[2025-04-27 06:20:55] 2025-04-27 10:20:38,618 | INFO     | zombie collector waiting for pid 30950
[2025-04-27 06:20:55] 2025-04-27 10:20:38,618 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-27 06:20:55] 2025-04-27 10:20:38,618 | INFO     | collected zombie processes
[2025-04-27 06:20:55] 2025-04-27 10:20:38,618 | INFO     | will attempt to kill all subprocesses of pid=30950
[2025-04-27 06:20:55] 2025-04-27 10:20:40,824 | INFO     | process IDs to be killed: [30950] (in reverse order)
[2025-04-27 06:20:55] 2025-04-27 10:20:41,511 | WARNING  | found no corresponding commands to process id(s)
[2025-04-27 06:20:55] 2025-04-27 10:20:41,511 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-27 06:20:55] 2025-04-27 10:20:41,575 | INFO     | did not find any defunct processes belonging to 30950
[2025-04-27 06:20:55] 2025-04-27 10:20:41,616 | INFO     | did not find any defunct processes belonging to 30950
[2025-04-27 06:20:55] 2025-04-27 10:20:41,616 | INFO     | ready for new job
[2025-04-27 06:20:55] 2025-04-27 10:20:41,616 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-27 06:20:55] 2025-04-27 10:20:41,632 | INFO     | **************************************
[2025-04-27 06:20:55] 2025-04-27 10:20:41,632 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-27 06:20:55] 2025-04-27 10:20:41,632 | INFO     | **************************************
[2025-04-27 06:20:55] 2025-04-27 10:20:41,632 | INFO     | 
[2025-04-27 06:20:55] 2025-04-27 10:20:41,649 | INFO     | architecture information:
[2025-04-27 06:20:55] 2025-04-27 10:20:41,665 | INFO     | executing command: cat /etc/os-release
[2025-04-27 06:20:55] 2025-04-27 10:20:41,835 | INFO     | cat /etc/os-release:
[2025-04-27 06:20:55] NAME="CentOS Linux"
[2025-04-27 06:20:55] VERSION="7 (Core)"
[2025-04-27 06:20:55] ID="centos"
[2025-04-27 06:20:55] ID_LIKE="rhel fedora"
[2025-04-27 06:20:55] VERSION_ID="7"
[2025-04-27 06:20:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-27 06:20:55] ANSI_COLOR="0;31"
[2025-04-27 06:20:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-27 06:20:55] HOME_URL="https://www.centos.org/"
[2025-04-27 06:20:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-27 06:20:55] 
[2025-04-27 06:20:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-27 06:20:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-27 06:20:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-27 06:20:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-27 06:20:55] 
[2025-04-27 06:20:55] 2025-04-27 10:20:41,836 | INFO     | **************************************
[2025-04-27 06:20:55] 2025-04-27 10:20:42,348 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-04-27 06:20:55] 2025-04-27 10:20:42,498 | INFO     | sufficient remaining disk space (75076993024 B)
[2025-04-27 06:20:55] 2025-04-27 10:20:42,499 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-27 06:20:55] 2025-04-27 10:20:42,499 | INFO     | current server update state: UPDATING_FINAL
[2025-04-27 06:20:55] 2025-04-27 10:20:42,499 | INFO     | update_server=False
[2025-04-27 06:20:55] 2025-04-27 10:20:42,499 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-27 06:20:55] 2025-04-27 10:20:42,499 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-27 06:20:55] 2025-04-27 10:20:42,500 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-27 06:20:55] 2025-04-27 10:20:42,500 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-27 06:20:55] 2025-04-27 10:20:42,521 | INFO     | all job control threads have been joined
[2025-04-27 06:20:55] 2025-04-27 10:20:42,665 | INFO     | all data control threads have been joined
[2025-04-27 06:20:55] 2025-04-27 10:20:42,681 | INFO     | PID=49248 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-27 06:20:55] 2025-04-27 10:20:42,681 | INFO     | .. there are 21 such processes running
[2025-04-27 06:20:55] 2025-04-27 10:20:42,681 | INFO     | found 0 job(s) in 20 queues
[2025-04-27 06:20:55] 2025-04-27 10:20:42,681 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-27 06:20:55] 2025-04-27 10:20:42,681 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-27 06:20:55] 2025-04-27 10:20:42,730 | INFO     | all payload control threads have been joined
[2025-04-27 06:20:55] 2025-04-27 10:20:43,224 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-27 06:20:55] 2025-04-27 10:20:43,224 | INFO     | aborting loop
[2025-04-27 06:20:55] 2025-04-27 10:20:43,509 | INFO     | [job] retrieve thread has finished
[2025-04-27 06:20:55] 2025-04-27 10:20:43,509 | INFO     | [job] queue monitor thread has finished
[2025-04-27 06:20:55] 2025-04-27 10:20:43,527 | INFO     | [job] control thread has finished
[2025-04-27 06:20:55] 2025-04-27 10:20:43,670 | INFO     | [data] control thread has finished
[2025-04-27 06:20:55] 2025-04-27 10:20:43,750 | INFO     | [payload] control thread has finished
[2025-04-27 06:20:55] 2025-04-27 10:20:43,905 | INFO     | [data] copytool_in thread has finished
[2025-04-27 06:20:55] 2025-04-27 10:20:43,912 | INFO     | [job] validate thread has finished
[2025-04-27 06:20:55] 2025-04-27 10:20:43,933 | INFO     | [payload] execute_payloads thread has finished
[2025-04-27 06:20:55] 2025-04-27 10:20:43,938 | INFO     | [payload] validate_pre thread has finished
[2025-04-27 06:20:55] 2025-04-27 10:20:43,939 | INFO     | [job] create_data_payload thread has finished
[2025-04-27 06:20:55] 2025-04-27 10:20:44,221 | INFO     | [payload] failed_post thread has finished
[2025-04-27 06:20:55] 2025-04-27 10:20:44,230 | INFO     | [job] job monitor thread has finished
[2025-04-27 06:20:55] 2025-04-27 10:20:44,236 | INFO     | [payload] validate_post thread has finished
[2025-04-27 06:20:55] 2025-04-27 10:20:44,403 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-27 06:20:55] 2025-04-27 10:20:44,507 | INFO     | [data] copytool_out thread has finished
[2025-04-27 06:20:55] 2025-04-27 10:20:46,521 | INFO     | [data] queue_monitor thread has finished
[2025-04-27 06:20:55] 2025-04-27 10:20:46,972 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140225079240512)>', '<ExcThread(monitor, started 140224508196608)>']
[2025-04-27 06:20:55] 2025-04-27 10:20:47,712 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-27 06:20:55] 2025-04-27 10:20:47,712 | INFO     | [monitor] control thread has ended
[2025-04-27 06:20:55] 2025-04-27 10:20:52,002 | INFO     | all workflow threads have been joined
[2025-04-27 06:20:55] 2025-04-27 10:20:52,002 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-27 06:20:55] 2025-04-27 10:20:52,002 | INFO     | traces error code: 0
[2025-04-27 06:20:55] 2025-04-27 10:20:52,003 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-27 06:20:55] 2025-04-27 10:20:52,398 [wrapper] ==== pilot stdout END ====
[2025-04-27 06:20:55] 2025-04-27 10:20:52,476 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-27 06:20:55] 2025-04-27 10:20:52,515 [wrapper] pilotpid: 49248
[2025-04-27 06:20:55] 2025-04-27 10:20:52,568 [wrapper] Pilot exit status: 0
[2025-04-27 06:20:55] 2025-04-27 10:20:52,861 [wrapper] pandaids: 6617362202 6617362202
[2025-04-27 06:20:55] 2025-04-27 10:20:53,450 [wrapper] cleanup supervisor_pilot 42797 49250
[2025-04-27 06:20:55] 2025-04-27 10:20:53,496 [wrapper] Test setup, not cleaning
[2025-04-27 06:20:55] 2025-04-27 10:20:53,530 [wrapper] apfmon messages muted
[2025-04-27 06:20:55] 2025-04-27 10:20:53,655 [wrapper] ==== wrapper stdout END ====
[2025-04-27 06:20:55] 2025-04-27 10:20:53,685 [wrapper] ==== wrapper stderr END ====
[2025-04-27 06:20:55]  *** Error codes and diagnostics ***
[2025-04-27 06:20:55]     "exeErrorCode": 0,
[2025-04-27 06:20:55]     "exeErrorDiag": "",
[2025-04-27 06:20:55]     "pilotErrorCode": 0,
[2025-04-27 06:20:55]     "pilotErrorDiag": "",
[2025-04-27 06:20:55]  *** Listing of results directory ***
[2025-04-27 06:20:55] total 635212
[2025-04-27 06:20:55] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-27 06:20:55] -rw-r--r-- 1 boincer umatlas    495897 Apr 26 04:23 pilot3.tar.gz
[2025-04-27 06:20:55] -rw-r--r-- 1 boincer umatlas      5111 Apr 26 04:38 queuedata.json
[2025-04-27 06:20:55] -rwx------ 1 boincer umatlas     37140 Apr 26 04:39 runpilot2-wrapper.sh
[2025-04-27 06:20:55] -rw-r--r-- 1 boincer umatlas       100 Apr 26 20:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-27 06:20:55] -rwxr-xr-x 1 boincer umatlas      7986 Apr 26 20:29 run_atlas
[2025-04-27 06:20:55] -rw-r--r-- 1 boincer umatlas       105 Apr 26 20:29 job.xml
[2025-04-27 06:20:55] -rw-r--r-- 3 boincer umatlas 221629655 Apr 26 20:29 EVNT.44292255._000295.pool.root.1
[2025-04-27 06:20:55] -rw-r--r-- 3 boincer umatlas 221629655 Apr 26 20:29 ATLAS.root_0
[2025-04-27 06:20:55] -rw-r--r-- 2 boincer umatlas     17569 Apr 26 20:29 start_atlas.sh
[2025-04-27 06:20:55] drwxrwx--x 2 boincer umatlas      4096 Apr 26 20:29 shared
[2025-04-27 06:20:55] -rw-r--r-- 2 boincer umatlas    508878 Apr 26 20:29 input.tar.gz
[2025-04-27 06:20:55] -rw-r--r-- 1 boincer umatlas         0 Apr 26 20:29 boinc_lockfile
[2025-04-27 06:20:55] -rw-r--r-- 1 boincer umatlas      2548 Apr 26 22:27 pandaJob.out
[2025-04-27 06:20:55] -rw------- 1 boincer umatlas       424 Apr 26 22:27 setup.sh.local
[2025-04-27 06:20:55] -rw------- 1 boincer umatlas    993176 Apr 26 22:28 agis_schedconf.cvmfs.json
[2025-04-27 06:20:55] -rw------- 1 boincer umatlas 197844264 Apr 27 06:18 HITS.44292257._007237.pool.root.1
[2025-04-27 06:20:55] -rw-r--r-- 1 boincer umatlas       531 Apr 27 06:18 boinc_task_state.xml
[2025-04-27 06:20:55] -rw-r--r-- 1 boincer umatlas      6254 Apr 27 06:18 init_data.xml
[2025-04-27 06:20:55] -rw------- 1 boincer umatlas      1077 Apr 27 06:19 memory_monitor_summary.json
[2025-04-27 06:20:55] -rw------- 1 boincer umatlas   1596659 Apr 27 06:19 agis_ddmendpoints.agis.ALL.json
[2025-04-27 06:20:55] -rw------- 1 boincer umatlas    503309 Apr 27 06:19 log.44292257._007237.job.log.tgz.1
[2025-04-27 06:20:55] -rw------- 1 boincer umatlas        96 Apr 27 06:20 pilot_heartbeat.json
[2025-04-27 06:20:55] -rw------- 1 boincer umatlas      7745 Apr 27 06:20 heartbeat.json
[2025-04-27 06:20:55] -rw------- 1 boincer umatlas      4746 Apr 27 06:20 pilotlog.txt
[2025-04-27 06:20:55] -rw------- 1 boincer umatlas   2256606 Apr 27 06:20 log.44292257._007237.job.log.1
[2025-04-27 06:20:55] -rw-r--r-- 1 boincer umatlas      8192 Apr 27 06:20 boinc_mmap_file
[2025-04-27 06:20:55] -rw------- 1 boincer umatlas       357 Apr 27 06:20 output.list
[2025-04-27 06:20:55] -rw-r--r-- 1 boincer umatlas       620 Apr 27 06:20 runtime_log
[2025-04-27 06:20:55] -rw------- 1 boincer umatlas   2775040 Apr 27 06:20 result.tar.gz
[2025-04-27 06:20:55] -rw-r--r-- 1 boincer umatlas     11099 Apr 27 06:20 runtime_log.err
[2025-04-27 06:20:55] -rw------- 1 boincer umatlas       789 Apr 27 06:20 CnZNDmJFqS7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmxWALDmlvH2Im.diag
[2025-04-27 06:20:55] -rw-r--r-- 1 boincer umatlas        28 Apr 27 06:20 wrapper_checkpoint.txt
[2025-04-27 06:20:55] -rw-r--r-- 1 boincer umatlas     23187 Apr 27 06:20 stderr.txt
[2025-04-27 06:20:55] HITS file was successfully produced:
[2025-04-27 06:20:55] -rw------- 1 boincer umatlas 197844264 Apr 27 06:18 shared/HITS.pool.root.1
[2025-04-27 06:20:55]  *** Contents of shared directory: ***
[2025-04-27 06:20:55] total 412880
[2025-04-27 06:20:55] -rw-r--r-- 3 boincer umatlas 221629655 Apr 26 20:29 ATLAS.root_0
[2025-04-27 06:20:55] -rw-r--r-- 2 boincer umatlas     17569 Apr 26 20:29 start_atlas.sh
[2025-04-27 06:20:55] -rw-r--r-- 2 boincer umatlas    508878 Apr 26 20:29 input.tar.gz
[2025-04-27 06:20:55] -rw------- 1 boincer umatlas 197844264 Apr 27 06:18 HITS.pool.root.1
[2025-04-27 06:20:55] -rw------- 1 boincer umatlas   2775040 Apr 27 06:20 result.tar.gz
06:20:57 (19655): run_atlas exited; CPU time 39529.537848
06:20:57 (19655): called boinc_finish(0)

</stderr_txt>
]]>

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