Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-27 03:06:29 (52367): Detected: vboxwrapper 26206
2025-04-27 03:06:29 (52367): Detected: BOINC client v8.0.2
2025-04-27 03:06:29 (52367): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-04-27 03:06:29 (52367): Successfully copied 'init_data.xml' to the shared directory.
2025-04-27 03:06:29 (52367): Create VM. (boinc_70dacf371617fe24, slot#0)
2025-04-27 03:06:29 (52367): Setting Memory Size for VM. (4800MB)
2025-04-27 03:06:29 (52367): Setting CPU Count for VM. (8)
2025-04-27 03:06:29 (52367): Setting Chipset Options for VM.
2025-04-27 03:06:29 (52367): Setting Graphics Controller Options for VM.
2025-04-27 03:06:29 (52367): Setting Boot Options for VM.
2025-04-27 03:06:29 (52367): Setting Network Configuration for NAT.
2025-04-27 03:06:29 (52367): Enabling VM Network Access.
2025-04-27 03:06:29 (52367): Disabling USB Support for VM.
2025-04-27 03:06:30 (52367): Disabling COM Port Support for VM.
2025-04-27 03:06:30 (52367): Disabling LPT Port Support for VM.
2025-04-27 03:06:30 (52367): Disabling Audio Support for VM.
2025-04-27 03:06:30 (52367): Disabling Clipboard Support for VM.
2025-04-27 03:06:30 (52367): Disabling Drag and Drop Support for VM.
2025-04-27 03:06:30 (52367): Adding storage controller(s) to VM.
2025-04-27 03:06:30 (52367): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-27 03:06:30 (52367): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-27 03:06:30 (52367): forwarding host port 38141 to guest port 80
2025-04-27 03:06:30 (52367): Enabling remote desktop for VM.
2025-04-27 03:06:30 (52367): Required extension pack not installed, remote desktop not enabled.
2025-04-27 03:06:30 (52367): Enabling shared directory for VM.
2025-04-27 03:06:30 (52367): Starting VM using VBoxManage interface. (boinc_70dacf371617fe24, slot#0)
2025-04-27 03:06:32 (52367): Successfully started VM. (PID = '52742')
2025-04-27 03:06:32 (52367): Reporting VM Process ID to BOINC.
2025-04-27 03:06:32 (52367): Guest Log: BIOS: VirtualBox 6.1.50
2025-04-27 03:06:32 (52367): Guest Log: CPUID EDX: 0x178bfbff
2025-04-27 03:06:32 (52367): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-27 03:06:32 (52367): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-27 03:06:32 (52367): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-27 03:06:32 (52367): Detected: Web Application Enabled (http://localhost:38141)
2025-04-27 03:06:32 (52367): Preference change detected
2025-04-27 03:06:32 (52367): Setting CPU throttle for VM. (100%)
2025-04-27 03:06:32 (52367): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-27 03:06:34 (52367): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-27 03:06:34 (52367): Guest Log: BIOS: Booting from Hard Disk...
2025-04-27 03:06:37 (52367): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-27 03:06:37 (52367): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-27 03:06:37 (52367): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-27 03:06:43 (52367): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-27 03:06:43 (52367): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-27 03:06:49 (52367): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-27 03:06:49 (52367): Guest Log: 00:00:00.000325 main     Log opened 2025-04-27T03:06:48.136013000Z
2025-04-27 03:06:49 (52367): Guest Log: 00:00:00.000532 main     OS Product: Linux
2025-04-27 03:06:49 (52367): Guest Log: 00:00:00.000644 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-27 03:06:49 (52367): Guest Log: 00:00:00.000705 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-27 03:06:49 (52367): Guest Log: 00:00:00.000756 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-27 03:06:49 (52367): Guest Log: 00:00:00.000757 main     Process ID: 1359
2025-04-27 03:06:49 (52367): Guest Log: 00:00:00.000759 main     Package type: LINUX_64BITS_GENERIC
2025-04-27 03:06:49 (52367): Guest Log: 00:00:00.002282 main     5.2.32 r132073 started. Verbose level = 0
2025-04-27 03:06:49 (52367): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-27 03:06:49 (52367): Guest Log: [INFO] Mounting shared directory
2025-04-27 03:06:49 (52367): Guest Log: [INFO] Checking for init_data.xml
2025-04-27 03:06:54 (52367): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-27 03:06:54 (52367): Guest Log: [INFO] Detected branch: prod
2025-04-27 03:06:55 (52367): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-27 03:06:55 (52367): Guest Log: Copying input files
2025-04-27 03:06:56 (52367): Guest Log: Copied input files into RunAtlas.
2025-04-27 03:06:56 (52367): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-27 03:06:56 (52367): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-27 03:06:56 (52367): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-27 03:06:56 (52367): Guest Log: Further information can be found at the LHC@home message board.
2025-04-27 03:07:07 (52367): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-27 03:07:07 (52367): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-27 03:07:07 (52367): Guest Log: 2.6.3.0 1635 0 30196 145323 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-27 03:07:08 (52367): Guest Log: copied the webapp to /var/www
2025-04-27 03:07:08 (52367): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-27 03:07:08 (52367): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-27 03:07:09 (52367): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-27 03:07:09 (52367): Guest Log:  *** Starting ATLAS job. (PandaID=6617611443 taskID=44292257) ***
2025-04-27 04:45:40 (52367): Status Report: Elapsed Time: '6000.000000'
2025-04-27 04:45:40 (52367): Status Report: CPU Time: '37200.800000'
2025-04-27 05:55:49 (52367): Guest Log:  *** Job finished ***
2025-04-27 05:55:49 (52367): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:32,485 | INFO     | [data] queue_monitor thread has finished
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:39,092 | INFO     | job.realtimelogging is not enabled
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:40,104 | INFO     | [payload] run_realtimelog thread has finished
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:42,063 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139888538584896)>', '<ExcThread(monitor, started 139887864956672)>']
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:42,668 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:42,668 | INFO     | [monitor] control thread has ended
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:47,068 | INFO     | all workflow threads have been joined
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:47,069 | INFO     | end of generic workflow (traces error code: 0)
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:47,069 | INFO     | traces error code: 0
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:47,070 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:47,182 [wrapper] ==== pilot stdout END ====
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:47,193 [wrapper] ==== wrapper stdout RESUME ====
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:47,203 [wrapper] pilotpid: 5999
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:47,212 [wrapper] Pilot exit status: 0
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:47,322 [wrapper] pandaids: 6617611443
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:47,389 [wrapper] cleanup supervisor_pilot  8409 6000
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:47,400 [wrapper] Test setup, not cleaning
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:47,411 [wrapper] apfmon messages muted
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:47,422 [wrapper] ==== wrapper stdout END ====
2025-04-27 05:55:49 (52367): Guest Log: 2025-04-27 05:55:47,433 [wrapper] ==== wrapper stderr END ====
2025-04-27 05:55:49 (52367): Guest Log:  *** Error codes and diagnostics ***
2025-04-27 05:55:49 (52367): Guest Log:     "exeErrorCode": 0,
2025-04-27 05:55:49 (52367): Guest Log:     "exeErrorDiag": "",
2025-04-27 05:55:49 (52367): Guest Log:     "pilotErrorCode": 0,
2025-04-27 05:55:49 (52367): Guest Log:     "pilotErrorDiag": "",
2025-04-27 05:55:49 (52367): Guest Log:  *** Listing of results directory ***
2025-04-27 05:55:49 (52367): Guest Log: total 201940
2025-04-27 05:55:49 (52367): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 26 20:11 runpilot2-wrapper.sh
2025-04-27 05:55:49 (52367): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 26 20:11 queuedata.json
2025-04-27 05:55:49 (52367): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 26 20:11 pilot3.tar.gz
2025-04-27 05:55:49 (52367): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Apr 27 03:06 start_atlas.sh
2025-04-27 05:55:49 (52367): Guest Log: -rw-r--r--. 1 atlas atlas    508871 Apr 27 03:06 input.tar.gz
2025-04-27 05:55:49 (52367): Guest Log: -rw-r--r--. 1 atlas atlas      7470 Apr 27 03:06 init_data.xml
2025-04-27 05:55:49 (52367): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 27 03:06 EVNT.44292255._001263.pool.root.1 -> /data/./ATLAS.root_0
2025-04-27 05:55:49 (52367): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Apr 27 03:07 pandaJob.out
2025-04-27 05:55:49 (52367): Guest Log: -rw-------. 1 atlas atlas       424 Apr 27 03:07 setup.sh.local
2025-04-27 05:55:49 (52367): Guest Log: -rw-------. 1 atlas atlas    993176 Apr 27 03:07 agis_schedconf.cvmfs.json
2025-04-27 05:55:49 (52367): Guest Log: -rw-------. 1 atlas atlas   1596659 Apr 27 03:07 agis_ddmendpoints.agis.ALL.json
2025-04-27 05:55:49 (52367): Guest Log: drwx------. 4 atlas atlas      4096 Apr 27 03:08 pilot3
2025-04-27 05:55:49 (52367): Guest Log: -rw-------. 1 atlas atlas 200680541 Apr 27 05:54 HITS.44292257._012727.pool.root.1
2025-04-27 05:55:49 (52367): Guest Log: -rw-------. 1 atlas atlas      1033 Apr 27 05:55 memory_monitor_summary.json
2025-04-27 05:55:49 (52367): Guest Log: -rw-------. 1 atlas atlas    340377 Apr 27 05:55 log.44292257._012727.job.log.tgz.1
2025-04-27 05:55:49 (52367): Guest Log: -rw-------. 1 atlas atlas        95 Apr 27 05:55 pilot_heartbeat.json
2025-04-27 05:55:49 (52367): Guest Log: -rw-------. 1 atlas atlas      7726 Apr 27 05:55 heartbeat.json
2025-04-27 05:55:49 (52367): Guest Log: -rw-------. 1 atlas atlas      4485 Apr 27 05:55 pilotlog.txt
2025-04-27 05:55:49 (52367): Guest Log: -rw-------. 1 atlas atlas    826512 Apr 27 05:55 log.44292257._012727.job.log.1
2025-04-27 05:55:49 (52367): Guest Log: -rw-------. 1 atlas atlas       357 Apr 27 05:55 output.list
2025-04-27 05:55:49 (52367): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 27 05:55 runtime_log
2025-04-27 05:55:49 (52367): Guest Log: -rw-------. 1 atlas atlas   1187840 Apr 27 05:55 result.tar.gz
2025-04-27 05:55:49 (52367): Guest Log: -rw-r--r--. 1 atlas atlas     10951 Apr 27 05:55 runtime_log.err
2025-04-27 05:55:49 (52367): Guest Log: -rw-------. 1 atlas atlas       660 Apr 27 05:55 B2xLDmJ30S7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmPDrLDmPx9kWm.diag
2025-04-27 05:55:49 (52367): Guest Log: Looking for outputfile HITS.44292257._012727.pool.root.1
2025-04-27 05:55:49 (52367): Guest Log: HITS file was successfully produced
2025-04-27 05:55:49 (52367): Guest Log: -rw-------. 1 atlas atlas 200680541 Apr 27 05:54 /home/atlas/RunAtlas/HITS.44292257._012727.pool.root.1
2025-04-27 05:55:49 (52367): Guest Log: Successfully finished the ATLAS job!
2025-04-27 05:55:49 (52367): Guest Log: Copying the results back to the shared directory!
2025-04-27 05:55:49 (52367): Guest Log:  *** Contents of shared directory: ***
2025-04-27 05:55:49 (52367): Guest Log: total 221740
2025-04-27 05:55:49 (52367): Guest Log: -rw-r--r--. 1 root root 225328517 Apr 27 03:06 ATLAS.root_0
2025-04-27 05:55:49 (52367): Guest Log: -rw-r--r--. 1 root root      7470 Apr 27 03:06 init_data.xml
2025-04-27 05:55:49 (52367): Guest Log: -rw-r--r--. 1 root root    508871 Apr 27 03:06 input.tar.gz
2025-04-27 05:55:49 (52367): Guest Log: -rw-r--r--. 1 root root   1187840 Apr 27 05:55 result.tar.gz
2025-04-27 05:55:49 (52367): Guest Log: -rw-r--r--. 1 root root     17569 Apr 27 03:06 start_atlas.sh
2025-04-27 05:55:49 (52367): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-27 05:55:50 (52367): VM Completion File Detected.
2025-04-27 05:55:50 (52367): Powering off VM.
2025-04-27 05:55:50 (52367): Successfully stopped VM.
2025-04-27 05:55:50 (52367): Deregistering VM. (boinc_70dacf371617fe24, slot#0)
2025-04-27 05:55:50 (52367): Removing network bandwidth throttle group from VM.
2025-04-27 05:55:50 (52367): Removing VM from VirtualBox.
05:55:55 (52367): called boinc_finish(0)

</stderr_txt>
]]>

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