Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-27 07:47:24 (4108799): Detected: vboxwrapper 26206
2025-04-27 07:47:24 (4108799): Detected: BOINC client v7.24.1
2025-04-27 07:47:24 (4108799): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2025-04-27 07:47:24 (4108799): Successfully copied 'init_data.xml' to the shared directory.
2025-04-27 07:47:24 (4108799): Create VM. (boinc_d45d4cf9e34d3683, slot#1)
2025-04-27 07:47:24 (4108799): Setting Memory Size for VM. (4400MB)
2025-04-27 07:47:24 (4108799): Setting CPU Count for VM. (4)
2025-04-27 07:47:24 (4108799): Setting Chipset Options for VM.
2025-04-27 07:47:24 (4108799): Setting Graphics Controller Options for VM.
2025-04-27 07:47:24 (4108799): Setting Boot Options for VM.
2025-04-27 07:47:24 (4108799): Setting Network Configuration for NAT.
2025-04-27 07:47:24 (4108799): Enabling VM Network Access.
2025-04-27 07:47:25 (4108799): Disabling USB Support for VM.
2025-04-27 07:47:25 (4108799): Disabling COM Port Support for VM.
2025-04-27 07:47:25 (4108799): Disabling LPT Port Support for VM.
2025-04-27 07:47:25 (4108799): Disabling Audio Support for VM.
2025-04-27 07:47:25 (4108799): Disabling Clipboard Support for VM.
2025-04-27 07:47:25 (4108799): Disabling Drag and Drop Support for VM.
2025-04-27 07:47:25 (4108799): Adding storage controller(s) to VM.
2025-04-27 07:47:25 (4108799): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-27 07:47:26 (4108799): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-27 07:47:26 (4108799): forwarding host port 45189 to guest port 80
2025-04-27 07:47:26 (4108799): Enabling remote desktop for VM.
2025-04-27 07:47:27 (4108799): Enabling shared directory for VM.
2025-04-27 07:47:27 (4108799): Starting VM using VBoxManage interface. (boinc_d45d4cf9e34d3683, slot#1)
2025-04-27 07:47:28 (4108799): Successfully started VM. (PID = '4109274')
2025-04-27 07:47:28 (4108799): Reporting VM Process ID to BOINC.
2025-04-27 07:47:28 (4108799): Guest Log: BIOS: VirtualBox 7.0.16
2025-04-27 07:47:28 (4108799): Guest Log: CPUID EDX: 0x178bfbff
2025-04-27 07:47:28 (4108799): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-27 07:47:28 (4108799): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-27 07:47:28 (4108799): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-27 07:47:28 (4108799): Detected: Web Application Enabled (http://localhost:45189)
2025-04-27 07:47:28 (4108799): Detected: Remote Desktop Enabled (localhost:45425)
2025-04-27 07:47:28 (4108799): Preference change detected
2025-04-27 07:47:28 (4108799): Setting CPU throttle for VM. (33%)
2025-04-27 07:47:28 (4108799): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-27 07:47:30 (4108799): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-27 07:47:30 (4108799): Guest Log: BIOS: Booting from Hard Disk...
2025-04-27 07:47:35 (4108799): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-27 07:47:35 (4108799): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-27 07:47:35 (4108799): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-27 07:47:45 (4108799): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-27 07:47:45 (4108799): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-27 07:47:58 (4108799): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-27 07:47:58 (4108799): Guest Log: 00:00:00.000132 main     Log opened 2025-04-27T00:47:56.012109000Z
2025-04-27 07:47:58 (4108799): Guest Log: 00:00:00.000228 main     OS Product: Linux
2025-04-27 07:47:58 (4108799): Guest Log: 00:00:00.000253 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-27 07:47:58 (4108799): Guest Log: 00:00:00.000266 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-27 07:47:58 (4108799): Guest Log: 00:00:00.000278 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-27 07:47:58 (4108799): Guest Log: 00:00:00.000279 main     Process ID: 1233
2025-04-27 07:47:58 (4108799): Guest Log: 00:00:00.000279 main     Package type: LINUX_64BITS_GENERIC
2025-04-27 07:47:58 (4108799): Guest Log: 00:00:00.001084 main     5.2.32 r132073 started. Verbose level = 0
2025-04-27 07:47:58 (4108799): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-27 07:47:58 (4108799): Guest Log: [INFO] Mounting shared directory
2025-04-27 07:47:58 (4108799): Guest Log: [INFO] Checking for init_data.xml
2025-04-27 07:48:35 (4108799): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-27 07:48:35 (4108799): Guest Log: [INFO] Detected branch: prod
2025-04-27 07:48:37 (4108799): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-27 07:48:37 (4108799): Guest Log: Copying input files
2025-04-27 07:48:40 (4108799): Guest Log: Copied input files into RunAtlas.
2025-04-27 07:48:40 (4108799): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-27 07:48:40 (4108799): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-27 07:48:40 (4108799): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-27 07:48:40 (4108799): Guest Log: Further information can be found at the LHC@home message board.
2025-04-27 07:49:06 (4108799): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-27 07:49:07 (4108799): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-27 07:49:07 (4108799): Guest Log: 2.6.3.0 1526 0 32040 145320 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-27 07:49:07 (4108799): Guest Log: copied the webapp to /var/www
2025-04-27 07:49:07 (4108799): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-27 07:49:07 (4108799): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-27 07:49:09 (4108799): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-27 07:49:09 (4108799): Guest Log:  *** Starting ATLAS job. (PandaID=6617457941 taskID=44292257) ***
2025-04-27 08:47:45 (4108799): Preference change detected
2025-04-27 08:47:45 (4108799): Setting CPU throttle for VM. (33%)
2025-04-27 08:47:45 (4108799): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-27 09:26:28 (4108799): Status Report: Elapsed Time: '6000.000000'
2025-04-27 09:26:28 (4108799): Status Report: CPU Time: '4820.010000'
2025-04-27 09:51:11 (4108799): Preference change detected
2025-04-27 09:51:11 (4108799): Setting CPU throttle for VM. (33%)
2025-04-27 09:51:11 (4108799): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-27 11:05:29 (4108799): Status Report: Elapsed Time: '12000.000000'
2025-04-27 11:05:29 (4108799): Status Report: CPU Time: '12373.390000'
2025-04-27 12:44:29 (4108799): Status Report: Elapsed Time: '18000.000000'
2025-04-27 12:44:29 (4108799): Status Report: CPU Time: '19941.030000'
2025-04-27 14:23:30 (4108799): Status Report: Elapsed Time: '24000.000000'
2025-04-27 14:23:30 (4108799): Status Report: CPU Time: '27496.740000'
2025-04-27 14:39:38 (4108799): Guest Log:  *** Job finished ***
2025-04-27 14:39:38 (4108799): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:27,905 | INFO     | job.realtimelogging is not enabled
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:28,908 | INFO     | [payload] run_realtimelog thread has finished
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:29,837 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140227783587648)>', '<ExcThread(monitor, started 140227486131968)>']
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:30,678 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:30,678 | INFO     | [monitor] control thread has ended
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:34,842 | INFO     | all workflow threads have been joined
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:34,843 | INFO     | end of generic workflow (traces error code: 0)
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:34,843 | INFO     | traces error code: 0
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:34,843 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:35,180 [wrapper] ==== pilot stdout END ====
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:35,189 [wrapper] ==== wrapper stdout RESUME ====
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:35,197 [wrapper] pilotpid: 5878
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:35,206 [wrapper] Pilot exit status: 0
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:35,367 [wrapper] supervise_pilot (15 min periods counter: 28)
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:36,414 [wrapper] pandaids: 6617457941
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:36,514 [wrapper] cleanup supervisor_pilot 26283 5879
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:36,524 [wrapper] Test setup, not cleaning
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:36,533 [wrapper] apfmon messages muted
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:36,543 [wrapper] ==== wrapper stdout END ====
2025-04-27 14:39:38 (4108799): Guest Log: 2025-04-27 07:39:36,552 [wrapper] ==== wrapper stderr END ====
2025-04-27 14:39:38 (4108799): Guest Log:  *** Error codes and diagnostics ***
2025-04-27 14:39:38 (4108799): Guest Log:     "exeErrorCode": 0,
2025-04-27 14:39:38 (4108799): Guest Log:     "exeErrorDiag": "",
2025-04-27 14:39:38 (4108799): Guest Log:     "pilotErrorCode": 0,
2025-04-27 14:39:38 (4108799): Guest Log:     "pilotErrorDiag": "",
2025-04-27 14:39:38 (4108799): Guest Log:  *** Listing of results directory ***
2025-04-27 14:39:38 (4108799): Guest Log: total 203548
2025-04-27 14:39:38 (4108799): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 26 10:36 pilot3.tar.gz
2025-04-27 14:39:38 (4108799): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 26 10:52 queuedata.json
2025-04-27 14:39:38 (4108799): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 26 10:54 runpilot2-wrapper.sh
2025-04-27 14:39:38 (4108799): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Apr 27 00:48 start_atlas.sh
2025-04-27 14:39:38 (4108799): Guest Log: -rw-r--r--. 1 atlas atlas      9071 Apr 27 00:48 init_data.xml
2025-04-27 14:39:38 (4108799): Guest Log: -rw-r--r--. 1 atlas atlas    508882 Apr 27 00:48 input.tar.gz
2025-04-27 14:39:38 (4108799): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 27 00:48 EVNT.44292255._000332.pool.root.1 -> /data/./ATLAS.root_0
2025-04-27 14:39:38 (4108799): Guest Log: -rw-r--r--. 1 atlas atlas      2548 Apr 27 00:49 pandaJob.out
2025-04-27 14:39:38 (4108799): Guest Log: -rw-------. 1 atlas atlas       424 Apr 27 00:49 setup.sh.local
2025-04-27 14:39:38 (4108799): Guest Log: -rw-------. 1 atlas atlas    993184 Apr 27 00:53 agis_schedconf.cvmfs.json
2025-04-27 14:39:38 (4108799): Guest Log: drwx------. 4 atlas atlas      4096 Apr 27 00:54 pilot3
2025-04-27 14:39:38 (4108799): Guest Log: -rw-------. 1 atlas atlas 200720339 Apr 27 07:36 HITS.44292257._008319.pool.root.1
2025-04-27 14:39:38 (4108799): Guest Log: -rw-------. 1 atlas atlas      1033 Apr 27 07:38 memory_monitor_summary.json
2025-04-27 14:39:38 (4108799): Guest Log: -rw-------. 1 atlas atlas   1596659 Apr 27 07:38 agis_ddmendpoints.agis.ALL.json
2025-04-27 14:39:38 (4108799): Guest Log: -rw-------. 1 atlas atlas    384804 Apr 27 07:38 log.44292257._008319.job.log.tgz.1
2025-04-27 14:39:38 (4108799): Guest Log: -rw-------. 1 atlas atlas        95 Apr 27 07:39 pilot_heartbeat.json
2025-04-27 14:39:38 (4108799): Guest Log: -rw-------. 1 atlas atlas      7708 Apr 27 07:39 heartbeat.json
2025-04-27 14:39:38 (4108799): Guest Log: -rw-------. 1 atlas atlas      4608 Apr 27 07:39 pilotlog.txt
2025-04-27 14:39:38 (4108799): Guest Log: -rw-------. 1 atlas atlas   1586986 Apr 27 07:39 log.44292257._008319.job.log.1
2025-04-27 14:39:38 (4108799): Guest Log: -rw-------. 1 atlas atlas       357 Apr 27 07:39 output.list
2025-04-27 14:39:38 (4108799): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 27 07:39 runtime_log
2025-04-27 14:39:38 (4108799): Guest Log: -rw-------. 1 atlas atlas   1986560 Apr 27 07:39 result.tar.gz
2025-04-27 14:39:38 (4108799): Guest Log: -rw-------. 1 atlas atlas       659 Apr 27 07:39 uMDMDmoLsS7n9Rq4apOajLDm4fhM0noT9bVoFjIUDm7cALDmnWiEMo.diag
2025-04-27 14:39:38 (4108799): Guest Log: -rw-r--r--. 1 atlas atlas     10942 Apr 27 07:39 runtime_log.err
2025-04-27 14:39:38 (4108799): Guest Log: Looking for outputfile HITS.44292257._008319.pool.root.1
2025-04-27 14:39:38 (4108799): Guest Log: HITS file was successfully produced
2025-04-27 14:39:38 (4108799): Guest Log: -rw-------. 1 atlas atlas 200720339 Apr 27 07:36 /home/atlas/RunAtlas/HITS.44292257._008319.pool.root.1
2025-04-27 14:39:38 (4108799): Guest Log: Successfully finished the ATLAS job!
2025-04-27 14:39:38 (4108799): Guest Log: Copying the results back to the shared directory!
2025-04-27 14:39:38 (4108799): Guest Log:  *** Contents of shared directory: ***
2025-04-27 14:39:38 (4108799): Guest Log: total 220064
2025-04-27 14:39:38 (4108799): Guest Log: -rw-r--r--. 1 root root 222806561 Apr 27 00:47 ATLAS.root_0
2025-04-27 14:39:38 (4108799): Guest Log: -rw-rw-r--. 1 root root      9071 Apr 27 00:47 init_data.xml
2025-04-27 14:39:38 (4108799): Guest Log: -rw-r--r--. 1 root root    508882 Apr 27 00:47 input.tar.gz
2025-04-27 14:39:38 (4108799): Guest Log: -rw-r--r--. 1 root root   1986560 Apr 27  2025 result.tar.gz
2025-04-27 14:39:38 (4108799): Guest Log: -rw-r--r--. 1 root root     17569 Apr 27 00:47 start_atlas.sh
2025-04-27 14:39:38 (4108799): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-27 14:39:38 (4108799): VM Completion File Detected.
2025-04-27 14:39:38 (4108799): Powering off VM.
2025-04-27 14:39:38 (4108799): Successfully stopped VM.
2025-04-27 14:39:38 (4108799): Deregistering VM. (boinc_d45d4cf9e34d3683, slot#1)
2025-04-27 14:39:38 (4108799): Removing network bandwidth throttle group from VM.
2025-04-27 14:39:38 (4108799): Removing VM from VirtualBox.
14:39:43 (4108799): called boinc_finish(0)

</stderr_txt>
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